Wall clock time and date at job start Mon Mar 30 2020 03:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.40215 * 120.50764 * 2 1 4 4 C 1.38506 * 120.74433 * 15.46171 * 3 2 1 5 5 C 1.38288 * 119.81121 * 180.02562 * 4 3 2 6 6 C 1.38272 * 120.20089 * 359.97438 * 5 4 3 7 7 C 1.38314 * 120.26281 * 359.97438 * 6 5 4 8 8 C 1.38399 * 119.86951 * 0.03385 * 7 6 5 9 9 O 1.35984 * 120.65993 * 180.02562 * 8 7 6 10 10 C 1.43001 * 116.70848 * 147.11577 * 9 8 7 11 11 H 1.09004 * 109.44255 * 166.45177 * 10 9 8 12 12 C 1.50702 * 109.44548 * 286.35093 * 10 9 8 13 13 H 1.07992 * 119.99893 * 119.99820 * 12 10 9 14 14 C 1.37875 * 120.00076 * 300.00361 * 12 10 9 15 15 N 1.31521 * 119.99881 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00253 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47045 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47004 * 119.99792 * 16 14 12 19 19 H 1.48497 * 109.47375 * 239.99968 * 16 14 12 20 20 C 1.35084 * 120.51016 * 179.71421 * 2 1 3 21 21 O 1.21303 * 120.13232 * 1.67498 * 20 2 1 22 22 H 1.08999 * 109.46892 * 90.00692 * 1 2 3 23 23 H 1.09000 * 109.46803 * 209.99865 * 1 2 3 24 24 H 1.09000 * 109.47214 * 330.00659 * 1 2 3 25 25 H 1.07998 * 120.09395 * 0.07718 * 4 3 2 26 26 H 1.07999 * 119.89527 * 180.02562 * 5 4 3 27 27 H 1.08011 * 119.87123 * 179.97438 * 6 5 4 28 28 H 1.07999 * 120.06511 * 179.97438 * 7 6 5 29 29 H 0.97006 * 119.99998 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1769 1.2080 0.0000 4 6 1.5478 2.4005 0.3174 5 6 2.2683 3.5808 0.3108 6 6 3.6131 3.5731 -0.0107 7 6 4.2472 2.3854 -0.3275 8 6 3.5327 1.2001 -0.3233 9 8 4.1401 0.0232 -0.6317 10 6 3.6581 -1.1440 0.0393 11 1 4.0455 -2.0338 -0.4570 12 6 4.1235 -1.1270 1.4725 13 1 3.4007 -1.1277 2.2749 14 6 5.4719 -1.1105 1.7593 15 7 6.3521 -1.1101 0.7821 16 14 6.0489 -1.0887 3.5359 17 1 4.8702 -1.0935 4.4392 18 1 6.8801 -2.2904 3.8012 19 1 6.8549 0.1344 3.7796 20 6 2.1509 -1.1638 0.0058 21 8 1.5566 -2.2210 -0.0196 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5137 25 1 0.4978 2.4084 0.5700 26 1 1.7793 4.5114 0.5585 27 1 4.1707 4.4982 -0.0146 28 1 5.2976 2.3831 -0.5786 29 1 7.3009 -1.0988 0.9838 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084770280.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:46 Heat of formation + Delta-G solvation = -57.346639 kcal Electronic energy + Delta-G solvation = -16520.107292 eV Core-core repulsion = 13793.926549 eV Total energy + Delta-G solvation = -2726.180743 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.19416 -39.67209 -38.22052 -36.49112 -34.86603 -31.43247 -30.76581 -30.25136 -27.97249 -25.38098 -24.20534 -22.99649 -20.38248 -19.80368 -18.96938 -18.09080 -17.05555 -16.66882 -16.39415 -16.01026 -15.71226 -15.38814 -15.10019 -14.86180 -14.32933 -13.87125 -13.65408 -13.16045 -13.04567 -12.97372 -12.82556 -12.56393 -12.25964 -11.93684 -11.39170 -11.23352 -10.87664 -10.58924 -9.40666 -8.61733 -8.31189 -6.65142 0.32176 0.55282 1.33197 1.35749 1.44940 1.53200 1.80335 2.30391 2.67200 2.99439 3.25346 3.41012 3.89524 4.18695 4.25778 4.37162 4.52530 4.54677 4.60421 4.73388 4.88336 4.96617 5.21576 5.39631 5.44054 5.58568 5.66060 5.68133 5.99438 6.07026 6.39873 6.83847 6.89452 7.14716 8.70248 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.021915 B = 0.012354 C = 0.009520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.330699 B = 2265.894464 C = 2940.325221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.557 5.557 3 C 0.062 3.938 4 C -0.124 4.124 5 C -0.122 4.122 6 C -0.105 4.105 7 C -0.142 4.142 8 C 0.085 3.915 9 O -0.324 6.324 10 C 0.204 3.796 11 H 0.080 0.920 12 C -0.577 4.577 13 H 0.052 0.948 14 C 0.044 3.956 15 N -0.878 5.878 16 Si 0.969 3.031 17 H -0.270 1.270 18 H -0.268 1.268 19 H -0.266 1.266 20 C 0.496 3.504 21 O -0.566 6.566 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.111 0.889 25 H 0.157 0.843 26 H 0.169 0.831 27 H 0.160 0.840 28 H 0.121 0.879 29 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.332 11.576 0.254 13.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.282 5.282 3 C -0.031 4.031 4 C -0.144 4.144 5 C -0.140 4.140 6 C -0.123 4.123 7 C -0.161 4.161 8 C 0.037 3.963 9 O -0.239 6.239 10 C 0.147 3.853 11 H 0.097 0.903 12 C -0.614 4.614 13 H 0.070 0.930 14 C -0.163 4.163 15 N -0.513 5.513 16 Si 0.792 3.208 17 H -0.195 1.195 18 H -0.193 1.193 19 H -0.191 1.191 20 C 0.287 3.713 21 O -0.446 6.446 22 H 0.092 0.908 23 H 0.088 0.912 24 H 0.130 0.870 25 H 0.175 0.825 26 H 0.186 0.814 27 H 0.177 0.823 28 H 0.139 0.861 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.372 10.886 0.022 13.148 hybrid contribution 0.445 -0.824 0.694 1.165 sum -6.927 10.063 0.716 12.237 Atomic orbital electron populations 1.22024 0.76323 1.04699 1.03562 1.45640 1.08346 1.04296 1.69882 1.18475 0.91138 0.87180 1.06351 1.20985 1.01617 0.89872 1.01961 1.21272 0.93849 0.98149 1.00740 1.21295 0.95487 0.96920 0.98616 1.20743 0.99874 0.91085 1.04424 1.19234 0.89877 0.88220 0.98920 1.86345 1.60570 1.13967 1.63010 1.20217 0.84229 0.85437 0.95368 0.90279 1.21240 0.93147 1.56993 0.90040 0.93001 1.25823 0.96016 0.91938 1.02493 1.70129 1.02348 1.45134 1.33682 0.85355 0.78438 0.78739 0.78261 1.19489 1.19274 1.19064 1.22269 0.92381 0.83232 0.73418 1.90548 1.71787 1.31181 1.51086 0.90778 0.91192 0.87047 0.82534 0.81384 0.82268 0.86124 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.23 10.24 127.77 1.31 3.53 15 2 N -0.56 -23.26 3.12 -653.57 -2.04 -25.30 15 3 C 0.06 2.47 6.39 38.14 0.24 2.71 15 4 C -0.12 -3.56 9.36 22.35 0.21 -3.35 15 5 C -0.12 -2.93 10.04 22.29 0.22 -2.70 15 6 C -0.10 -2.88 10.04 22.30 0.22 -2.65 15 7 C -0.14 -5.42 10.00 22.33 0.22 -5.19 15 8 C 0.08 3.86 6.06 22.59 0.14 4.00 15 9 O -0.32 -17.58 9.58 -93.38 -0.89 -18.47 15 10 C 0.20 11.46 3.06 29.12 0.09 11.55 15 11 H 0.08 4.77 8.14 -2.39 -0.02 4.75 15 12 C -0.58 -33.30 8.37 25.60 0.21 -33.08 15 13 H 0.05 3.04 7.73 -2.91 -0.02 3.02 15 14 C 0.04 2.41 5.40 84.65 0.46 2.87 15 15 N -0.88 -50.39 12.84 21.45 0.28 -50.11 15 16 Si 0.97 43.07 29.54 68.60 2.03 45.10 15 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 18 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 19 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 20 C 0.50 25.39 6.85 87.63 0.60 25.99 15 21 O -0.57 -30.64 16.77 -3.10 -0.05 -30.69 15 22 H 0.07 1.97 8.14 -2.39 -0.02 1.95 15 23 H 0.07 2.23 7.48 -2.39 -0.02 2.21 15 24 H 0.11 2.41 5.96 -2.39 -0.01 2.40 15 25 H 0.16 3.30 6.12 -2.91 -0.02 3.28 15 26 H 0.17 2.49 8.06 -2.91 -0.02 2.47 15 27 H 0.16 3.12 8.06 -2.90 -0.02 3.09 15 28 H 0.12 4.66 8.06 -2.91 -0.02 4.64 15 29 H 0.27 14.51 8.31 -92.70 -0.77 13.74 15 Total: -1.00 -71.11 255.02 4.41 -66.70 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 1.17 Total: 9.11 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 3.93 Total: 3.66 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -1.76 Total: -75.41 kcal Atomic # 8 Polarization: -48.22 SS G_CDS: -0.95 Total: -49.16 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -71.11 4.41 -66.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084770280.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.351 kcal (2) G-P(sol) polarization free energy of solvation -71.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds