Wall clock time and date at job start Mon Mar 30 2020 03:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38278 * 119.90386 * 2 1 4 4 C 1.38307 * 120.26106 * 179.97438 * 3 2 1 5 5 C 1.38388 * 119.87876 * 359.97438 * 4 3 2 6 6 C 1.39402 * 119.86557 * 0.02843 * 5 4 3 7 7 C 1.38288 * 119.89923 * 179.97438 * 2 1 3 8 8 N 1.40191 * 119.21423 * 179.66542 * 6 5 4 9 9 C 1.35092 * 118.99456 * 16.00019 * 8 6 5 10 10 O 1.21293 * 120.13888 * 181.41649 * 9 8 6 11 11 C 1.50758 * 119.72942 * 1.14100 * 9 8 6 12 12 H 1.08998 * 109.44426 * 208.94802 * 11 9 8 13 13 C 1.50702 * 109.44536 * 89.01016 * 11 9 8 14 14 H 1.08003 * 119.99734 * 0.02562 * 13 11 9 15 15 C 1.37872 * 120.00213 * 179.97438 * 13 11 9 16 16 N 1.31510 * 120.00127 * 180.02562 * 15 13 11 17 17 Si 1.86799 * 120.00010 * 0.02562 * 15 13 11 18 18 H 1.48499 * 109.47235 * 89.99861 * 17 15 13 19 19 H 1.48500 * 109.47164 * 210.00118 * 17 15 13 20 20 H 1.48499 * 109.46997 * 329.99664 * 17 15 13 21 21 O 1.35985 * 120.67591 * 180.02562 * 5 4 3 22 22 H 1.09002 * 109.47208 * 270.02321 * 1 2 3 23 23 H 1.08997 * 109.46989 * 30.02167 * 1 2 3 24 24 H 1.08996 * 109.46930 * 150.02162 * 1 2 3 25 25 H 1.08005 * 119.86980 * 359.97438 * 3 2 1 26 26 H 1.08007 * 120.06098 * 179.97438 * 4 3 2 27 27 H 1.08000 * 120.09688 * 359.97438 * 7 2 1 28 28 H 0.97003 * 120.50363 * 195.76566 * 8 6 5 29 29 H 0.97001 * 120.00060 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.1987 0.0000 4 6 3.5794 1.2073 0.0005 5 6 4.2763 0.0117 0.0016 6 6 3.5814 -1.1968 0.0015 7 6 2.1963 -1.1988 0.0005 8 7 4.3011 -2.3999 -0.0045 9 6 5.6134 -2.3796 0.3157 10 8 6.2619 -3.4043 0.2922 11 6 6.2700 -1.0770 0.6963 12 1 7.3255 -1.1103 0.4267 13 6 6.1382 -0.8642 2.1824 14 1 5.6305 -1.5986 2.7902 15 6 6.6668 0.2674 2.7664 16 7 6.5523 0.4528 4.0633 17 14 7.5455 1.5373 1.7154 18 1 6.5663 2.5446 1.2339 19 1 8.5918 2.2116 2.5251 20 1 8.1771 0.8651 0.5515 21 8 5.6361 0.0012 0.0027 22 1 -0.3634 0.0004 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8901 -0.5135 25 1 1.6527 2.1319 -0.0004 26 1 4.1146 2.1454 0.0001 27 1 1.6563 -2.1341 0.0014 28 1 3.8626 -3.2348 -0.2318 29 1 6.9238 1.2492 4.4741 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084770282.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:48 Heat of formation + Delta-G solvation = -71.817770 kcal Electronic energy + Delta-G solvation = -16316.881561 eV Core-core repulsion = 13590.073303 eV Total energy + Delta-G solvation = -2726.808258 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.26396 -39.84192 -38.51806 -36.17412 -34.96775 -32.92222 -31.01562 -30.34794 -27.15737 -25.87943 -23.94787 -23.39203 -20.29183 -20.06357 -18.90157 -18.73196 -17.25009 -17.03886 -16.35584 -15.99730 -15.80171 -15.26413 -15.05680 -14.74197 -14.55771 -14.22917 -13.81706 -13.36367 -13.03665 -12.83510 -12.71243 -12.60194 -12.05033 -11.83527 -11.67724 -11.41387 -11.02383 -10.81379 -9.46968 -8.68213 -8.53626 -6.76688 0.22703 0.41217 1.34176 1.37128 1.38782 1.49912 1.96179 2.24853 2.45049 2.87066 3.08551 3.31766 3.78892 4.05884 4.31460 4.38030 4.40471 4.65674 4.74252 4.97889 4.98180 4.99583 5.16527 5.23618 5.36049 5.64076 5.71721 5.77604 5.83665 5.96345 6.31787 6.58597 6.86655 7.00772 8.59457 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.024186 B = 0.011459 C = 0.009112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.419900 B = 2442.848497 C = 3072.131087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.092 4.092 3 C -0.107 4.107 4 C -0.133 4.133 5 C 0.075 3.925 6 C 0.076 3.924 7 C -0.125 4.125 8 N -0.651 5.651 9 C 0.512 3.488 10 O -0.561 6.561 11 C 0.169 3.831 12 H 0.115 0.885 13 C -0.560 4.560 14 H 0.037 0.963 15 C 0.051 3.949 16 N -0.912 5.912 17 Si 0.956 3.044 18 H -0.257 1.257 19 H -0.283 1.283 20 H -0.252 1.252 21 O -0.336 6.336 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.160 0.840 26 H 0.132 0.868 27 H 0.153 0.847 28 H 0.418 0.582 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.997 3.106 -9.967 15.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.093 4.093 3 C -0.126 4.126 4 C -0.152 4.152 5 C 0.029 3.971 6 C -0.019 4.019 7 C -0.145 4.145 8 N -0.297 5.297 9 C 0.301 3.699 10 O -0.440 6.440 11 C 0.112 3.888 12 H 0.132 0.868 13 C -0.597 4.597 14 H 0.055 0.945 15 C -0.153 4.153 16 N -0.549 5.549 17 Si 0.780 3.220 18 H -0.182 1.182 19 H -0.209 1.209 20 H -0.176 1.176 21 O -0.253 6.253 22 H 0.094 0.906 23 H 0.103 0.897 24 H 0.097 0.903 25 H 0.178 0.822 26 H 0.150 0.850 27 H 0.171 0.829 28 H 0.258 0.742 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.349 2.884 -9.868 15.314 hybrid contribution 0.631 -0.322 0.273 0.760 sum -10.718 2.562 -9.595 14.612 Atomic orbital electron populations 1.20771 0.87831 1.04192 1.03123 1.20045 0.97999 0.91440 0.99773 1.21167 0.91805 0.99433 1.00152 1.20774 0.95159 0.95634 1.03667 1.18989 0.83197 0.93502 1.01460 1.18286 0.93080 0.84432 1.06055 1.20756 0.89474 1.00437 1.03840 1.43494 1.09410 1.09849 1.66929 1.21729 0.82323 0.92034 0.73799 1.90629 1.64068 1.36095 1.53208 1.20780 0.94755 0.80312 0.92905 0.86771 1.20938 1.40481 1.08205 0.90039 0.94472 1.25724 0.94315 0.99312 0.95939 1.69994 1.44260 1.28827 1.11787 0.85543 0.78657 0.79165 0.78668 1.18167 1.20943 1.17584 1.86173 1.16756 1.50580 1.71746 0.90628 0.89714 0.90291 0.82241 0.85032 0.82923 0.74157 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.61 10.01 71.24 0.71 -0.90 15 2 C -0.09 -2.27 5.88 -19.84 -0.12 -2.39 15 3 C -0.11 -2.87 9.69 22.30 0.22 -2.65 15 4 C -0.13 -4.66 10.00 22.32 0.22 -4.44 15 5 C 0.07 3.12 6.06 22.59 0.14 3.25 15 6 C 0.08 2.86 6.54 38.15 0.25 3.11 15 7 C -0.12 -3.56 9.61 22.35 0.21 -3.34 15 8 N -0.65 -25.21 5.47 -302.70 -1.66 -26.87 15 9 C 0.51 24.32 7.13 87.63 0.62 24.94 15 10 O -0.56 -28.69 17.95 -3.07 -0.06 -28.74 15 11 C 0.17 8.56 2.53 29.12 0.07 8.63 15 12 H 0.12 5.68 7.20 -2.39 -0.02 5.66 15 13 C -0.56 -32.56 8.96 25.60 0.23 -32.33 15 14 H 0.04 2.43 7.98 -2.91 -0.02 2.40 15 15 C 0.05 2.93 5.47 84.65 0.46 3.39 15 16 N -0.91 -54.89 13.96 21.44 0.30 -54.59 15 17 Si 0.96 44.55 26.17 68.60 1.80 46.34 15 18 H -0.26 -11.40 7.11 99.48 0.71 -10.70 15 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 20 H -0.25 -11.26 6.54 99.48 0.65 -10.60 15 21 O -0.34 -15.76 7.87 -93.38 -0.73 -16.50 15 22 H 0.08 1.14 8.14 -2.39 -0.02 1.12 15 23 H 0.08 1.02 8.08 -2.39 -0.02 1.01 15 24 H 0.08 1.01 8.08 -2.39 -0.02 0.99 15 25 H 0.16 3.06 8.06 -2.91 -0.02 3.04 15 26 H 0.13 4.41 8.06 -2.91 -0.02 4.39 15 27 H 0.15 3.34 8.06 -2.91 -0.02 3.32 15 28 H 0.42 13.16 8.89 -92.71 -0.82 12.33 15 29 H 0.28 15.41 8.31 -92.71 -0.77 14.64 15 Total: -1.00 -70.40 254.91 2.98 -67.42 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.30 Total: 15.66 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 3.03 Total: -2.73 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -1.36 Total: -81.46 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: -0.79 Total: -45.24 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.80 Total: 46.34 kcal Total: -70.40 2.98 -67.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084770282.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.394 kcal (2) G-P(sol) polarization free energy of solvation -70.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds