Wall clock time and date at job start Mon Mar 30 2020 03:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38364 * 120.06319 * 2 1 4 4 C 1.38237 * 120.25566 * 180.02562 * 3 2 1 5 5 C 1.38329 * 120.20624 * 359.94276 * 4 3 2 6 6 C 1.38467 * 119.80756 * 0.08187 * 5 4 3 7 7 C 1.38358 * 120.06458 * 180.02562 * 2 1 3 8 8 O 1.35986 * 120.66736 * 0.07968 * 7 2 1 9 9 C 1.42993 * 116.70990 * 147.16292 * 8 7 2 10 10 H 1.09006 * 109.44381 * 286.37493 * 9 8 7 11 11 C 1.50703 * 109.44232 * 166.44651 * 9 8 7 12 12 H 1.08000 * 120.00008 * 240.00316 * 11 9 8 13 13 C 1.37876 * 120.00013 * 59.99622 * 11 9 8 14 14 N 1.31512 * 120.00176 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 119.99878 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47206 * 90.00549 * 15 13 11 17 17 H 1.48506 * 109.47194 * 210.00060 * 15 13 11 18 18 H 1.48492 * 109.47571 * 330.00248 * 15 13 11 19 19 C 1.50759 * 109.64299 * 46.39275 * 9 8 7 20 20 O 1.21289 * 120.13272 * 148.68333 * 19 9 8 21 21 N 1.35083 * 119.73280 * 328.66397 * 19 9 8 22 22 H 1.08997 * 109.47031 * 269.97915 * 1 2 3 23 23 H 1.08996 * 109.46971 * 29.98198 * 1 2 3 24 24 H 1.08999 * 109.46645 * 149.98023 * 1 2 3 25 25 H 1.08000 * 119.86891 * 0.03068 * 3 2 1 26 26 H 1.08003 * 119.89530 * 179.97438 * 4 3 2 27 27 H 1.07994 * 120.09684 * 180.02562 * 5 4 3 28 28 H 0.97001 * 120.00189 * 179.97438 * 14 13 11 29 29 H 0.96999 * 120.50759 * 181.96548 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1975 0.0000 4 6 3.5825 1.2022 -0.0005 5 6 4.2825 0.0090 0.0001 6 6 3.5944 -1.1926 -0.0004 7 6 2.2001 -1.1974 -0.0005 8 8 1.5353 -2.3837 -0.0027 9 6 2.1582 -3.4683 -0.6958 10 1 2.0728 -3.3087 -1.7708 11 6 1.4750 -4.7592 -0.3246 12 1 2.0382 -5.5531 0.1433 13 6 0.1309 -4.9268 -0.5821 14 7 -0.5549 -3.9602 -1.1522 15 14 -0.7161 -6.5266 -0.1213 16 1 -1.2477 -6.4248 1.2616 17 1 -1.8345 -6.7840 -1.0638 18 1 0.2604 -7.6429 -0.1952 19 6 3.6148 -3.5436 -0.3145 20 8 4.1834 -4.6147 -0.2910 21 7 4.2842 -2.4134 0.0005 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3632 -0.8898 -0.5141 25 1 1.6590 2.1322 0.0005 26 1 4.1176 2.1403 -0.0009 27 1 5.3624 0.0147 0.0001 28 1 -1.5005 -4.0782 -1.3337 29 1 5.2285 -2.4453 0.2199 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084770286.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:18 Heat of formation + Delta-G solvation = -50.993867 kcal Electronic energy + Delta-G solvation = -16263.713890 eV Core-core repulsion = 13537.808624 eV Total energy + Delta-G solvation = -2725.905266 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.47919 -38.13778 -36.39002 -34.66030 -32.91764 -31.42186 -29.19829 -27.58305 -26.34416 -23.95646 -22.61036 -21.12231 -19.04531 -17.83670 -17.06392 -16.47526 -15.59675 -15.24498 -14.80737 -14.45338 -14.13219 -13.52735 -13.24121 -12.93413 -12.79314 -12.10790 -11.91617 -11.84331 -11.21214 -11.08783 -10.98577 -10.74578 -10.54459 -10.27098 -10.03032 -9.46152 -8.90873 -8.74208 -7.89573 -7.14062 -6.30823 -4.43844 1.64977 1.84093 3.19070 3.25926 3.29067 3.36061 3.59704 4.18265 4.26349 4.51199 5.00123 5.21557 5.27699 5.36841 5.61871 5.75636 5.94995 6.12456 6.21931 6.28225 6.50254 6.72754 6.73856 6.81071 6.97222 7.21461 7.34575 7.43477 7.66989 7.85237 8.50485 8.72397 8.76839 9.26954 10.76904 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.029956 B = 0.009787 C = 0.007549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.494750 B = 2860.180312 C = 3708.237126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.092 4.092 3 C -0.119 4.119 4 C -0.135 4.135 5 C -0.139 4.139 6 C 0.085 3.915 7 C 0.101 3.899 8 O -0.279 6.279 9 C 0.210 3.790 10 H 0.063 0.937 11 C -0.517 4.517 12 H 0.085 0.915 13 C 0.080 3.920 14 N -0.852 5.852 15 Si 0.909 3.091 16 H -0.275 1.275 17 H -0.282 1.282 18 H -0.268 1.268 19 C 0.493 3.507 20 O -0.518 6.518 21 N -0.675 5.675 22 H 0.062 0.938 23 H 0.055 0.945 24 H 0.089 0.911 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.268 0.732 29 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.675 9.668 1.221 10.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.154 4.154 5 C -0.160 4.160 6 C -0.011 4.011 7 C 0.052 3.948 8 O -0.192 6.192 9 C 0.154 3.846 10 H 0.080 0.920 11 C -0.553 4.553 12 H 0.103 0.897 13 C -0.129 4.129 14 N -0.487 5.487 15 Si 0.735 3.265 16 H -0.201 1.201 17 H -0.207 1.207 18 H -0.193 1.193 19 C 0.282 3.718 20 O -0.392 6.392 21 N -0.322 5.322 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.108 0.892 25 H 0.139 0.861 26 H 0.137 0.863 27 H 0.138 0.862 28 H 0.078 0.922 29 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.443 8.953 1.181 9.665 hybrid contribution 0.355 -0.573 0.282 0.731 sum 3.799 8.380 1.463 9.316 Atomic orbital electron populations 1.20618 0.90300 1.03265 1.02004 1.19387 0.96758 0.90235 1.02956 1.20780 0.93889 0.96710 1.02452 1.20658 0.94028 0.96808 1.03923 1.20449 0.99100 0.90708 1.05721 1.18192 0.91339 0.86149 1.05454 1.18993 0.88134 0.89387 0.98329 1.86926 1.46942 1.14850 1.70530 1.20412 0.82828 0.86910 0.94413 0.92022 1.20915 0.95117 0.95513 1.43781 0.89719 1.25112 0.97131 0.97370 0.93264 1.70012 1.08736 1.31970 1.37988 0.86306 0.78975 0.82617 0.78571 1.20082 1.20742 1.19253 1.22738 0.91762 0.82448 0.74811 1.90620 1.70145 1.27868 1.50577 1.44038 1.12960 1.06073 1.69160 0.91935 0.92609 0.89215 0.86129 0.86292 0.86243 0.92207 0.76439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 9.81 36.01 0.35 -1.46 15 2 C -0.09 -1.68 5.89 -104.53 -0.62 -2.30 15 3 C -0.12 -1.78 9.70 -39.54 -0.38 -2.17 15 4 C -0.14 -1.88 10.04 -39.55 -0.40 -2.28 15 5 C -0.14 -2.12 9.95 -39.46 -0.39 -2.51 15 6 C 0.08 1.61 6.54 -83.49 -0.55 1.07 15 7 C 0.10 2.15 6.41 -39.09 -0.25 1.90 15 8 O -0.28 -7.05 8.56 -19.70 -0.17 -7.22 15 9 C 0.21 5.50 2.92 -29.00 -0.08 5.42 15 10 H 0.06 1.68 8.14 -51.93 -0.42 1.26 15 11 C -0.52 -14.50 8.56 -34.44 -0.29 -14.80 15 12 H 0.08 2.44 7.11 -52.49 -0.37 2.06 15 13 C 0.08 2.15 5.40 -17.82 -0.10 2.06 15 14 N -0.85 -23.37 12.84 55.43 0.71 -22.65 15 15 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 15 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 19 C 0.49 11.85 7.64 -10.82 -0.08 11.77 15 20 O -0.52 -13.51 16.77 5.55 0.09 -13.41 15 21 N -0.68 -13.29 5.47 -9.67 -0.05 -13.34 15 22 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 23 H 0.05 0.79 8.09 -51.93 -0.42 0.37 15 24 H 0.09 1.84 7.56 -51.93 -0.39 1.45 15 25 H 0.12 1.45 8.06 -52.49 -0.42 1.03 15 26 H 0.12 1.27 8.06 -52.48 -0.42 0.85 15 27 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 28 H 0.27 6.88 8.31 -40.82 -0.34 6.54 15 29 H 0.40 6.56 8.89 -40.82 -0.36 6.20 15 LS Contribution 257.77 15.07 3.88 3.88 Total: -1.00 -30.14 257.77 -6.14 -36.29 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -2.80 Total: 3.97 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -2.79 Total: -3.30 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.66 Total: -36.00 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.08 Total: -20.63 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.14 -6.14 -36.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084770286.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.708 kcal (2) G-P(sol) polarization free energy of solvation -30.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds