Wall clock time and date at job start Mon Mar 30 2020 03:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38364 * 120.06319 * 2 1 4 4 C 1.38237 * 120.25566 * 180.02562 * 3 2 1 5 5 C 1.38329 * 120.20624 * 359.94276 * 4 3 2 6 6 C 1.38467 * 119.80756 * 0.08187 * 5 4 3 7 7 C 1.38358 * 120.06458 * 180.02562 * 2 1 3 8 8 O 1.35986 * 120.66736 * 0.07968 * 7 2 1 9 9 C 1.42993 * 116.70990 * 147.16292 * 8 7 2 10 10 H 1.09006 * 109.44381 * 286.37493 * 9 8 7 11 11 C 1.50703 * 109.44232 * 166.44651 * 9 8 7 12 12 H 1.08000 * 120.00008 * 240.00316 * 11 9 8 13 13 C 1.37876 * 120.00013 * 59.99622 * 11 9 8 14 14 N 1.31512 * 120.00176 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 119.99878 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47206 * 90.00549 * 15 13 11 17 17 H 1.48506 * 109.47194 * 210.00060 * 15 13 11 18 18 H 1.48492 * 109.47571 * 330.00248 * 15 13 11 19 19 C 1.50759 * 109.64299 * 46.39275 * 9 8 7 20 20 O 1.21289 * 120.13272 * 148.68333 * 19 9 8 21 21 N 1.35083 * 119.73280 * 328.66397 * 19 9 8 22 22 H 1.08997 * 109.47031 * 269.97915 * 1 2 3 23 23 H 1.08996 * 109.46971 * 29.98198 * 1 2 3 24 24 H 1.08999 * 109.46645 * 149.98023 * 1 2 3 25 25 H 1.08000 * 119.86891 * 0.03068 * 3 2 1 26 26 H 1.08003 * 119.89530 * 179.97438 * 4 3 2 27 27 H 1.07994 * 120.09684 * 180.02562 * 5 4 3 28 28 H 0.97001 * 120.00189 * 179.97438 * 14 13 11 29 29 H 0.96999 * 120.50759 * 181.96548 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1975 0.0000 4 6 3.5825 1.2022 -0.0005 5 6 4.2825 0.0090 0.0001 6 6 3.5944 -1.1926 -0.0004 7 6 2.2001 -1.1974 -0.0005 8 8 1.5353 -2.3837 -0.0027 9 6 2.1582 -3.4683 -0.6958 10 1 2.0728 -3.3087 -1.7708 11 6 1.4750 -4.7592 -0.3246 12 1 2.0382 -5.5531 0.1433 13 6 0.1309 -4.9268 -0.5821 14 7 -0.5549 -3.9602 -1.1522 15 14 -0.7161 -6.5266 -0.1213 16 1 -1.2477 -6.4248 1.2616 17 1 -1.8345 -6.7840 -1.0638 18 1 0.2604 -7.6429 -0.1952 19 6 3.6148 -3.5436 -0.3145 20 8 4.1834 -4.6147 -0.2910 21 7 4.2842 -2.4134 0.0005 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3632 -0.8898 -0.5141 25 1 1.6590 2.1322 0.0005 26 1 4.1176 2.1403 -0.0009 27 1 5.3624 0.0147 0.0001 28 1 -1.5005 -4.0782 -1.3337 29 1 5.2285 -2.4453 0.2199 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084770286.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:18 Heat of formation + Delta-G solvation = -71.957525 kcal Electronic energy + Delta-G solvation = -16264.622942 eV Core-core repulsion = 13537.808624 eV Total energy + Delta-G solvation = -2726.814319 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.12000 -39.79754 -38.07577 -36.27264 -34.91465 -32.84569 -30.93020 -29.27893 -27.72863 -25.94489 -24.14905 -22.52221 -20.72186 -19.58689 -18.83198 -18.23469 -17.29700 -16.90558 -16.63377 -15.95019 -15.69303 -15.18045 -15.02595 -14.50447 -14.26959 -13.76876 -13.43972 -13.17962 -13.00445 -12.84900 -12.61438 -12.45074 -12.14421 -11.97523 -11.56418 -11.37926 -10.85354 -10.65719 -9.26411 -8.69779 -8.35032 -6.58275 0.25233 0.48004 1.37817 1.40379 1.46438 1.54675 1.97611 2.34954 2.65547 2.89486 3.29615 3.41537 3.84717 4.14924 4.41742 4.46960 4.58297 4.63395 4.77727 4.90245 4.96170 5.21965 5.29769 5.43824 5.55401 5.58296 5.71306 5.83751 5.95195 6.05619 6.49275 6.91731 6.96480 7.17858 8.73367 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.029956 B = 0.009787 C = 0.007549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.494750 B = 2860.180312 C = 3708.237126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.106 4.106 3 C -0.107 4.107 4 C -0.115 4.115 5 C -0.125 4.125 6 C 0.059 3.941 7 C 0.046 3.954 8 O -0.305 6.305 9 C 0.212 3.788 10 H 0.033 0.967 11 C -0.551 4.551 12 H 0.067 0.933 13 C 0.037 3.963 14 N -0.877 5.877 15 Si 0.975 3.025 16 H -0.269 1.269 17 H -0.267 1.267 18 H -0.270 1.270 19 C 0.492 3.508 20 O -0.550 6.550 21 N -0.657 5.657 22 H 0.066 0.934 23 H 0.090 0.910 24 H 0.044 0.956 25 H 0.161 0.839 26 H 0.170 0.830 27 H 0.156 0.844 28 H 0.273 0.727 29 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.461 12.577 1.769 13.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.107 4.107 3 C -0.126 4.126 4 C -0.133 4.133 5 C -0.146 4.146 6 C -0.036 4.036 7 C -0.002 4.002 8 O -0.220 6.220 9 C 0.155 3.845 10 H 0.050 0.950 11 C -0.588 4.588 12 H 0.085 0.915 13 C -0.169 4.169 14 N -0.512 5.512 15 Si 0.798 3.202 16 H -0.194 1.194 17 H -0.191 1.191 18 H -0.194 1.194 19 C 0.281 3.719 20 O -0.428 6.428 21 N -0.304 5.304 22 H 0.085 0.915 23 H 0.109 0.891 24 H 0.063 0.937 25 H 0.179 0.821 26 H 0.187 0.813 27 H 0.174 0.826 28 H 0.083 0.917 29 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 4.246 11.935 1.735 12.786 hybrid contribution 0.177 -1.171 0.113 1.190 sum 4.424 10.763 1.848 11.783 Atomic orbital electron populations 1.20557 0.90250 1.02721 1.02133 1.19717 0.97245 0.90572 1.03152 1.21259 0.94779 0.96578 0.99951 1.21285 0.93727 0.98104 1.00195 1.20934 1.01010 0.89410 1.03207 1.18474 0.90781 0.86911 1.07455 1.19524 0.89674 0.88857 1.02127 1.86767 1.47774 1.16258 1.71190 1.19995 0.84402 0.87111 0.92967 0.95014 1.21029 0.96038 0.96630 1.45069 0.91496 1.25916 0.97338 1.00751 0.92862 1.70102 1.09105 1.33559 1.38399 0.85314 0.77964 0.78250 0.78694 1.19396 1.19117 1.19426 1.22319 0.91216 0.83220 0.75122 1.90580 1.70468 1.29193 1.52519 1.43671 1.13552 1.05366 1.67833 0.91483 0.89122 0.93665 0.82143 0.81301 0.82594 0.91736 0.74373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.41 9.81 71.24 0.70 -2.71 15 2 C -0.11 -3.73 5.89 -19.81 -0.12 -3.85 15 3 C -0.11 -2.70 9.70 22.30 0.22 -2.48 15 4 C -0.11 -2.50 10.04 22.29 0.22 -2.28 15 5 C -0.13 -3.29 9.95 22.35 0.22 -3.07 15 6 C 0.06 2.18 6.54 38.14 0.25 2.43 15 7 C 0.05 1.98 6.41 22.59 0.14 2.13 15 8 O -0.31 -16.34 8.56 -93.39 -0.80 -17.14 15 9 C 0.21 11.86 2.92 29.12 0.08 11.95 15 10 H 0.03 1.92 8.14 -2.38 -0.02 1.90 15 11 C -0.55 -32.88 8.56 25.60 0.22 -32.66 15 12 H 0.07 4.11 7.11 -2.91 -0.02 4.09 15 13 C 0.04 2.10 5.40 84.65 0.46 2.56 15 14 N -0.88 -50.28 12.84 21.45 0.28 -50.01 15 15 Si 0.98 44.04 29.54 68.60 2.03 46.07 15 16 H -0.27 -11.77 7.11 99.48 0.71 -11.07 15 17 H -0.27 -11.28 7.11 99.48 0.71 -10.57 15 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15 19 C 0.49 24.80 7.64 87.63 0.67 25.47 15 20 O -0.55 -30.07 16.77 -3.06 -0.05 -30.13 15 21 N -0.66 -25.92 5.47 -302.70 -1.66 -27.58 15 22 H 0.07 2.17 8.14 -2.39 -0.02 2.15 15 23 H 0.09 2.36 8.09 -2.39 -0.02 2.34 15 24 H 0.04 1.94 7.56 -2.39 -0.02 1.92 15 25 H 0.16 2.80 8.06 -2.91 -0.02 2.78 15 26 H 0.17 2.17 8.06 -2.91 -0.02 2.15 15 27 H 0.16 2.97 8.06 -2.91 -0.02 2.95 15 28 H 0.27 14.49 8.31 -92.71 -0.77 13.72 15 29 H 0.42 13.30 8.89 -92.71 -0.82 12.47 15 Total: -1.00 -71.12 257.77 3.22 -67.90 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.36 Total: 13.40 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 3.07 Total: -2.51 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -1.38 Total: -77.59 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: -0.85 Total: -47.27 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -71.12 3.22 -67.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084770286.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.059 kcal (2) G-P(sol) polarization free energy of solvation -71.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds