Wall clock time and date at job start Mon Mar 30 2020 03:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38282 * 119.87150 * 2 1 4 4 C 1.38283 * 120.20654 * 179.97438 * 3 2 1 5 5 C 1.38512 * 119.81207 * 0.02562 * 4 3 2 6 6 C 1.39400 * 119.98112 * 0.02562 * 5 4 3 7 7 C 1.38310 * 119.87645 * 180.02562 * 2 1 3 8 8 O 1.35979 * 119.46633 * 179.87576 * 6 5 4 9 9 C 1.42995 * 116.71608 * 327.20549 * 8 6 5 10 10 H 1.09002 * 109.41359 * 286.36219 * 9 8 6 11 11 C 1.50694 * 109.44661 * 166.44147 * 9 8 6 12 12 H 1.08000 * 120.00563 * 239.83407 * 11 9 8 13 13 C 1.37885 * 119.99902 * 59.83570 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.50760 * 109.63269 * 46.38981 * 9 8 6 20 20 O 1.21293 * 120.13269 * 148.66426 * 19 9 8 21 21 N 1.35086 * 119.73278 * 328.68875 * 19 9 8 22 22 H 1.08997 * 109.47363 * 89.99852 * 1 2 3 23 23 H 1.09000 * 109.46638 * 209.99964 * 1 2 3 24 24 H 1.08994 * 109.47026 * 329.99823 * 1 2 3 25 25 H 1.08000 * 119.89538 * 0.02562 * 3 2 1 26 26 H 1.07998 * 120.09504 * 180.02562 * 4 3 2 27 27 H 1.08000 * 120.05929 * 359.96418 * 7 2 1 28 28 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 29 29 H 0.97007 * 120.50756 * 181.64407 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1991 0.0000 4 6 3.5785 1.2072 0.0005 5 6 4.2742 0.0094 0.0005 6 6 3.5799 -1.1994 -0.0005 7 6 2.1960 -1.1993 -0.0005 8 8 4.2733 -2.3691 -0.0031 9 6 5.5240 -2.3734 -0.6963 10 1 5.3425 -2.3673 -1.7711 11 6 6.2989 -3.6115 -0.3254 12 1 7.2694 -3.5220 0.1399 13 6 5.7689 -4.8587 -0.5801 14 7 4.5869 -4.9677 -1.1463 15 14 6.7298 -6.3933 -0.1210 16 1 5.9469 -7.5982 -0.4961 17 1 8.0267 -6.4002 -0.8442 18 1 6.9792 -6.4017 1.3429 19 6 6.3190 -1.1506 -0.3146 20 8 7.5308 -1.1952 -0.2907 21 7 5.6761 -0.0053 0.0012 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3632 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 1.6519 2.1322 0.0004 26 1 4.1146 2.1447 0.0010 27 1 1.6549 -2.1340 -0.0004 28 1 4.2142 -5.8451 -1.3259 29 1 6.1769 0.7948 0.2253 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084770290.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:00 Heat of formation + Delta-G solvation = -51.701752 kcal Electronic energy + Delta-G solvation = -16019.455890 eV Core-core repulsion = 13293.519927 eV Total energy + Delta-G solvation = -2725.935962 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.45693 -38.17296 -36.53902 -34.69168 -32.87117 -31.03436 -29.89983 -27.89448 -25.93108 -24.00837 -22.45421 -21.55186 -18.92039 -17.74419 -17.34744 -16.49327 -15.46252 -15.19988 -14.71758 -14.32896 -14.19369 -13.61359 -13.36066 -13.21373 -13.03722 -12.28464 -12.18501 -11.76429 -11.50676 -11.15527 -10.97615 -10.71582 -10.59493 -10.27272 -9.95767 -9.47847 -8.92014 -8.74591 -8.03068 -7.10953 -6.30220 -4.43946 1.62074 1.83541 3.18689 3.27761 3.28591 3.34124 3.60096 4.15768 4.26399 4.49168 5.01055 5.15292 5.20129 5.35402 5.48634 5.64775 5.78759 5.81121 5.95019 6.20100 6.34924 6.49945 6.66378 6.74489 6.93905 7.15119 7.31471 7.43169 7.67058 7.85205 8.50084 8.72561 8.76748 9.26924 10.77475 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.031071 B = 0.008561 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.933314 B = 3270.007605 C = 4086.513296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.086 4.086 3 C -0.139 4.139 4 C -0.128 4.128 5 C 0.076 3.924 6 C 0.109 3.891 7 C -0.127 4.127 8 O -0.283 6.283 9 C 0.211 3.789 10 H 0.063 0.937 11 C -0.518 4.518 12 H 0.085 0.915 13 C 0.079 3.921 14 N -0.853 5.853 15 Si 0.911 3.089 16 H -0.283 1.283 17 H -0.271 1.271 18 H -0.271 1.271 19 C 0.493 3.507 20 O -0.518 6.518 21 N -0.675 5.675 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.119 0.881 26 H 0.121 0.879 27 H 0.132 0.868 28 H 0.269 0.731 29 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.157 9.204 1.244 11.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.087 4.087 3 C -0.158 4.158 4 C -0.149 4.149 5 C -0.020 4.020 6 C 0.059 3.941 7 C -0.146 4.146 8 O -0.197 6.197 9 C 0.155 3.845 10 H 0.080 0.920 11 C -0.555 4.555 12 H 0.103 0.897 13 C -0.130 4.130 14 N -0.488 5.488 15 Si 0.737 3.263 16 H -0.208 1.208 17 H -0.196 1.196 18 H -0.196 1.196 19 C 0.283 3.717 20 O -0.392 6.392 21 N -0.322 5.322 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.137 0.863 26 H 0.139 0.861 27 H 0.150 0.850 28 H 0.079 0.921 29 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -6.665 8.648 1.205 10.984 hybrid contribution 0.714 -0.087 0.257 0.763 sum -5.951 8.561 1.463 10.529 Atomic orbital electron populations 1.20702 0.91336 1.02317 1.01982 1.19618 0.95702 0.92422 1.00923 1.20549 0.92980 0.97228 1.05050 1.20451 0.94363 0.95369 1.04696 1.18209 0.82996 0.94568 1.06212 1.19162 0.92056 0.85809 0.97042 1.20437 0.91179 0.98338 1.04689 1.86930 1.34639 1.27500 1.70632 1.20410 0.79048 0.90616 0.94401 0.91971 1.20883 1.02694 0.87857 1.44042 0.89701 1.25140 0.94828 0.99735 0.93270 1.70022 1.15743 1.24992 1.37995 0.86344 0.79838 0.80671 0.79455 1.20822 1.19563 1.19645 1.22716 0.89368 0.84800 0.74851 1.90619 1.14241 1.83729 1.50634 1.44023 1.04754 1.14361 1.69067 0.91496 0.91655 0.91967 0.86293 0.86128 0.84967 0.92112 0.76446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 36.01 0.36 -0.83 15 2 C -0.09 -1.28 5.88 -104.58 -0.62 -1.89 15 3 C -0.14 -1.94 9.69 -39.55 -0.38 -2.32 15 4 C -0.13 -1.94 9.95 -39.46 -0.39 -2.33 15 5 C 0.08 1.45 6.54 -83.49 -0.55 0.90 15 6 C 0.11 2.33 6.44 -39.09 -0.25 2.08 15 7 C -0.13 -2.33 9.65 -39.50 -0.38 -2.71 15 8 O -0.28 -7.32 9.47 -19.68 -0.19 -7.51 15 9 C 0.21 5.59 2.92 -29.01 -0.08 5.50 15 10 H 0.06 1.71 8.14 -51.93 -0.42 1.29 15 11 C -0.52 -14.71 8.56 -34.44 -0.29 -15.00 15 12 H 0.08 2.45 7.11 -52.49 -0.37 2.08 15 13 C 0.08 2.16 5.40 -17.82 -0.10 2.07 15 14 N -0.85 -23.97 12.83 55.43 0.71 -23.26 15 15 Si 0.91 21.02 29.54 -169.99 -5.02 16.00 15 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 19 C 0.49 11.90 7.64 -10.82 -0.08 11.82 15 20 O -0.52 -13.53 16.77 5.55 0.09 -13.44 15 21 N -0.68 -13.28 5.47 -9.66 -0.05 -13.34 15 22 H 0.07 0.69 8.14 -51.93 -0.42 0.26 15 23 H 0.06 0.70 8.08 -51.93 -0.42 0.28 15 24 H 0.06 0.58 8.08 -51.93 -0.42 0.16 15 25 H 0.12 1.29 8.06 -52.49 -0.42 0.87 15 26 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 27 H 0.13 2.38 8.06 -52.49 -0.42 1.96 15 28 H 0.27 7.07 8.31 -40.82 -0.34 6.73 15 29 H 0.40 6.54 8.89 -40.82 -0.36 6.18 15 LS Contribution 259.01 15.07 3.90 3.90 Total: -1.00 -30.86 259.01 -6.15 -37.01 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -2.82 Total: 3.35 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -2.77 Total: -2.72 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.66 Total: -36.60 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.09 Total: -20.95 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.86 -6.15 -37.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084770290.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.694 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds