Wall clock time and date at job start Mon Mar 30 2020 03:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38282 * 119.87150 * 2 1 4 4 C 1.38283 * 120.20654 * 179.97438 * 3 2 1 5 5 C 1.38512 * 119.81207 * 0.02562 * 4 3 2 6 6 C 1.39400 * 119.98112 * 0.02562 * 5 4 3 7 7 C 1.38310 * 119.87645 * 180.02562 * 2 1 3 8 8 O 1.35979 * 119.46633 * 179.87576 * 6 5 4 9 9 C 1.42995 * 116.71608 * 327.20549 * 8 6 5 10 10 H 1.09002 * 109.41359 * 286.36219 * 9 8 6 11 11 C 1.50694 * 109.44661 * 166.44147 * 9 8 6 12 12 H 1.08000 * 120.00563 * 239.83407 * 11 9 8 13 13 C 1.37885 * 119.99902 * 59.83570 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.50760 * 109.63269 * 46.38981 * 9 8 6 20 20 O 1.21293 * 120.13269 * 148.66426 * 19 9 8 21 21 N 1.35086 * 119.73278 * 328.68875 * 19 9 8 22 22 H 1.08997 * 109.47363 * 89.99852 * 1 2 3 23 23 H 1.09000 * 109.46638 * 209.99964 * 1 2 3 24 24 H 1.08994 * 109.47026 * 329.99823 * 1 2 3 25 25 H 1.08000 * 119.89538 * 0.02562 * 3 2 1 26 26 H 1.07998 * 120.09504 * 180.02562 * 4 3 2 27 27 H 1.08000 * 120.05929 * 359.96418 * 7 2 1 28 28 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 29 29 H 0.97007 * 120.50756 * 181.64407 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1991 0.0000 4 6 3.5785 1.2072 0.0005 5 6 4.2742 0.0094 0.0005 6 6 3.5799 -1.1994 -0.0005 7 6 2.1960 -1.1993 -0.0005 8 8 4.2733 -2.3691 -0.0031 9 6 5.5240 -2.3734 -0.6963 10 1 5.3425 -2.3673 -1.7711 11 6 6.2989 -3.6115 -0.3254 12 1 7.2694 -3.5220 0.1399 13 6 5.7689 -4.8587 -0.5801 14 7 4.5869 -4.9677 -1.1463 15 14 6.7298 -6.3933 -0.1210 16 1 5.9469 -7.5982 -0.4961 17 1 8.0267 -6.4002 -0.8442 18 1 6.9792 -6.4017 1.3429 19 6 6.3190 -1.1506 -0.3146 20 8 7.5308 -1.1952 -0.2907 21 7 5.6761 -0.0053 0.0012 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3632 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 1.6519 2.1322 0.0004 26 1 4.1146 2.1447 0.0010 27 1 1.6549 -2.1340 -0.0004 28 1 4.2142 -5.8451 -1.3259 29 1 6.1769 0.7948 0.2253 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084770290.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:59 Heat of formation + Delta-G solvation = -73.368074 kcal Electronic energy + Delta-G solvation = -16020.395412 eV Core-core repulsion = 13293.519927 eV Total energy + Delta-G solvation = -2726.875485 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.11848 -39.80660 -38.25365 -36.29741 -34.91544 -32.32542 -31.47354 -29.73224 -27.19632 -25.99322 -23.99472 -22.94547 -20.60088 -19.46428 -19.11417 -18.34939 -17.20265 -16.89330 -16.55888 -15.91085 -15.60365 -15.12754 -15.02309 -14.75369 -14.46788 -13.82788 -13.60484 -13.01760 -12.94252 -12.88590 -12.64714 -12.57044 -12.15871 -11.98820 -11.57781 -11.28212 -10.87680 -10.67327 -9.45706 -8.64673 -8.37463 -6.61427 0.20929 0.46007 1.36523 1.40376 1.46021 1.52344 1.96842 2.33698 2.61253 2.86212 3.25687 3.40856 3.84107 4.08446 4.34369 4.45969 4.49591 4.63876 4.78141 4.96534 5.05561 5.14138 5.23769 5.31710 5.51420 5.54736 5.69043 5.83045 5.91522 6.02825 6.46821 6.88746 6.95775 7.15328 8.71234 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.031071 B = 0.008561 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.933314 B = 3270.007605 C = 4086.513296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.075 4.075 3 C -0.121 4.121 4 C -0.110 4.110 5 C 0.050 3.950 6 C 0.057 3.943 7 C -0.141 4.141 8 O -0.315 6.315 9 C 0.212 3.788 10 H 0.034 0.966 11 C -0.552 4.552 12 H 0.070 0.930 13 C 0.034 3.966 14 N -0.883 5.883 15 Si 0.978 3.022 16 H -0.268 1.268 17 H -0.265 1.265 18 H -0.269 1.269 19 C 0.493 3.507 20 O -0.549 6.549 21 N -0.655 5.655 22 H 0.081 0.919 23 H 0.065 0.935 24 H 0.092 0.908 25 H 0.169 0.831 26 H 0.161 0.839 27 H 0.122 0.878 28 H 0.274 0.726 29 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.954 11.452 1.776 14.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.076 4.076 3 C -0.140 4.140 4 C -0.131 4.131 5 C -0.044 4.044 6 C 0.009 3.991 7 C -0.160 4.160 8 O -0.229 6.229 9 C 0.155 3.845 10 H 0.052 0.948 11 C -0.588 4.588 12 H 0.088 0.912 13 C -0.171 4.171 14 N -0.518 5.518 15 Si 0.800 3.200 16 H -0.192 1.192 17 H -0.190 1.190 18 H -0.194 1.194 19 C 0.282 3.718 20 O -0.426 6.426 21 N -0.303 5.303 22 H 0.099 0.901 23 H 0.084 0.916 24 H 0.111 0.889 25 H 0.186 0.814 26 H 0.178 0.822 27 H 0.140 0.860 28 H 0.083 0.917 29 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -8.515 10.951 1.745 13.981 hybrid contribution 1.025 -0.572 0.092 1.178 sum -7.490 10.378 1.837 12.930 Atomic orbital electron populations 1.20811 0.88185 1.03932 1.03340 1.20113 0.97895 0.91346 0.98238 1.21164 0.92541 0.98642 1.01604 1.20941 0.95150 0.95119 1.01849 1.18433 0.82336 0.95315 1.08353 1.19630 0.93276 0.85444 1.00734 1.20601 0.90140 0.99826 1.05466 1.86759 1.34485 1.30275 1.71417 1.20023 0.79941 0.91557 0.93007 0.94844 1.21043 1.02987 0.89628 1.45164 0.91219 1.25994 0.95749 1.02595 0.92791 1.70116 1.17012 1.25933 1.38701 0.85325 0.78613 0.76915 0.79118 1.19203 1.18957 1.19368 1.22243 0.88742 0.85598 0.75212 1.90581 1.15060 1.84460 1.52530 1.43633 1.05423 1.13507 1.67732 0.90086 0.91610 0.88913 0.81359 0.82190 0.86007 0.91676 0.74276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 10.01 71.24 0.71 -1.20 15 2 C -0.07 -1.98 5.88 -19.84 -0.12 -2.10 15 3 C -0.12 -2.73 9.69 22.29 0.22 -2.51 15 4 C -0.11 -2.90 9.95 22.35 0.22 -2.68 15 5 C 0.05 1.88 6.54 38.15 0.25 2.13 15 6 C 0.06 2.50 6.44 22.59 0.15 2.64 15 7 C -0.14 -5.17 9.65 22.32 0.22 -4.95 15 8 O -0.31 -17.25 9.47 -93.32 -0.88 -18.14 15 9 C 0.21 11.94 2.92 29.12 0.09 12.02 15 10 H 0.03 2.03 8.14 -2.39 -0.02 2.01 15 11 C -0.55 -33.15 8.56 25.60 0.22 -32.93 15 12 H 0.07 4.27 7.11 -2.91 -0.02 4.25 15 13 C 0.03 1.95 5.40 84.66 0.46 2.41 15 14 N -0.88 -51.72 12.83 21.45 0.28 -51.45 15 15 Si 0.98 44.31 29.54 68.60 2.03 46.33 15 16 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 17 H -0.26 -11.66 7.11 99.48 0.71 -10.96 15 18 H -0.27 -11.96 7.11 99.48 0.71 -11.26 15 19 C 0.49 24.87 7.64 87.63 0.67 25.54 15 20 O -0.55 -29.90 16.77 -3.07 -0.05 -29.95 15 21 N -0.66 -25.81 5.47 -302.69 -1.66 -27.47 15 22 H 0.08 1.30 8.14 -2.39 -0.02 1.28 15 23 H 0.06 1.21 8.08 -2.39 -0.02 1.19 15 24 H 0.09 1.16 8.08 -2.39 -0.02 1.14 15 25 H 0.17 2.30 8.06 -2.91 -0.02 2.28 15 26 H 0.16 2.98 8.06 -2.91 -0.02 2.96 15 27 H 0.12 4.57 8.06 -2.91 -0.02 4.54 15 28 H 0.27 14.84 8.31 -92.71 -0.77 14.07 15 29 H 0.42 13.20 8.89 -92.70 -0.82 12.38 15 Total: -1.00 -72.20 259.01 3.14 -69.05 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.36 Total: 13.25 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 3.08 Total: -1.63 kcal Atomic # 7 Polarization: -77.53 SS G_CDS: -1.38 Total: -78.92 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -0.93 Total: -48.09 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -72.20 3.14 -69.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084770290.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.314 kcal (2) G-P(sol) polarization free energy of solvation -72.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds