Wall clock time and date at job start Mon Mar 30 2020 03:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38268 * 120.09697 * 2 1 4 4 C 1.38297 * 120.21950 * 180.22446 * 3 2 1 5 5 C 1.38343 * 120.28202 * 359.47313 * 4 3 2 6 6 C 1.38366 * 119.87909 * 0.27162 * 5 4 3 7 7 C 1.38592 * 120.09822 * 179.73470 * 2 1 3 8 8 N 1.39938 * 120.74867 * 0.08732 * 7 2 1 9 9 C 1.37101 * 120.49259 * 15.43694 * 8 7 2 10 10 H 1.07999 * 119.99402 * 52.02207 * 9 8 7 11 11 C 1.38874 * 120.00102 * 232.01732 * 9 8 7 12 12 N 1.31429 * 119.99889 * 197.18773 * 11 9 8 13 13 Si 1.86796 * 119.99942 * 17.18777 * 11 9 8 14 14 H 1.48498 * 109.47241 * 85.39414 * 13 11 9 15 15 H 1.48500 * 109.47132 * 205.39192 * 13 11 9 16 16 H 1.48504 * 109.47330 * 325.39328 * 13 11 9 17 17 C 1.35080 * 119.01031 * 195.42432 * 8 7 2 18 18 O 1.21286 * 120.12505 * 181.68929 * 17 8 7 19 19 C 1.50751 * 119.75196 * 1.70636 * 17 8 7 20 20 O 1.35938 * 120.68544 * 180.02562 * 6 5 4 21 21 H 1.09006 * 109.47092 * 237.39760 * 1 2 3 22 22 H 1.09004 * 109.47347 * 357.39661 * 1 2 3 23 23 H 1.08999 * 109.47291 * 117.39852 * 1 2 3 24 24 H 1.08000 * 119.89059 * 0.02562 * 3 2 1 25 25 H 1.07995 * 119.85969 * 179.74907 * 4 3 2 26 26 H 1.07998 * 120.06095 * 180.29014 * 5 4 3 27 27 H 0.97006 * 119.99661 * 179.97438 * 12 11 9 28 28 H 1.08999 * 109.44633 * 208.62869 * 19 17 8 29 29 H 1.09000 * 109.44424 * 88.72991 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2003 1.1963 0.0000 4 6 3.5833 1.1992 -0.0047 5 6 4.2835 0.0061 0.0016 6 6 3.5976 -1.1956 0.0069 7 6 2.2020 -1.1990 0.0056 8 7 1.5203 -2.4211 0.0094 9 6 0.1873 -2.4752 -0.3066 10 1 -0.1695 -2.0248 -1.2211 11 6 -0.7041 -3.1091 0.5491 12 7 -1.8934 -3.4621 0.1152 13 14 -0.2127 -3.4599 2.3168 14 1 -0.4915 -2.2659 3.1544 15 1 -0.9928 -4.6158 2.8273 16 1 1.2370 -3.7771 2.3740 17 6 2.1953 -3.5468 0.3288 18 8 1.6320 -4.6207 0.3087 19 6 3.6512 -3.4631 0.7107 20 8 4.2691 -2.3776 0.0136 21 1 -0.3633 -0.5537 0.8658 22 1 -0.3634 1.0266 0.0467 23 1 -0.3634 -0.4729 -0.9124 24 1 1.6601 2.1315 0.0004 25 1 4.1190 2.1370 -0.0088 26 1 5.3635 0.0126 0.0026 27 1 -2.5159 -3.9052 0.7129 28 1 4.1501 -4.3952 0.4455 29 1 3.7357 -3.2999 1.7851 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084883721.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:13 Heat of formation + Delta-G solvation = -18.001950 kcal Electronic energy + Delta-G solvation = -16810.623281 eV Core-core repulsion = 14086.148652 eV Total energy + Delta-G solvation = -2724.474629 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.84380 -38.04445 -37.24721 -34.92667 -32.34107 -31.53102 -29.32977 -28.02164 -26.31352 -24.02754 -22.82996 -20.94408 -19.28813 -17.96112 -17.66065 -16.58220 -15.82309 -14.96661 -14.72140 -14.58754 -13.88902 -13.78610 -13.67968 -12.89995 -12.78399 -12.31983 -12.19868 -11.81802 -11.47447 -11.28198 -11.10551 -10.61061 -10.53443 -10.31398 -10.11079 -9.32703 -8.89865 -8.78815 -7.87189 -7.00427 -6.47797 -4.28641 1.70297 1.82834 2.98373 3.21186 3.25197 3.38188 3.73805 4.10980 4.18682 4.30749 4.80053 5.00476 5.31837 5.38616 5.48661 5.59732 5.75973 5.78072 6.03680 6.30153 6.38428 6.67919 6.72488 6.81421 6.99933 7.08683 7.37539 7.53774 7.58525 7.94353 8.42312 8.50819 9.06547 9.35892 10.56332 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.027356 B = 0.013815 C = 0.010460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.277649 B = 2026.232711 C = 2676.339261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.078 4.078 3 C -0.120 4.120 4 C -0.137 4.137 5 C -0.122 4.122 6 C 0.052 3.948 7 C 0.109 3.891 8 N -0.404 5.404 9 C -0.352 4.352 10 H 0.110 0.890 11 C 0.096 3.904 12 N -0.849 5.849 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.280 1.280 16 H -0.267 1.267 17 C 0.449 3.551 18 O -0.514 6.514 19 C 0.049 3.951 20 O -0.311 6.311 21 H 0.074 0.926 22 H 0.035 0.965 23 H 0.089 0.911 24 H 0.120 0.880 25 H 0.121 0.879 26 H 0.125 0.875 27 H 0.278 0.722 28 H 0.131 0.869 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.619 7.375 2.389 11.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 C -0.139 4.139 4 C -0.157 4.157 5 C -0.141 4.141 6 C 0.005 3.995 7 C 0.011 3.989 8 N -0.117 5.117 9 C -0.477 4.477 10 H 0.127 0.873 11 C -0.115 4.115 12 N -0.481 5.481 13 Si 0.718 3.282 14 H -0.208 1.208 15 H -0.206 1.206 16 H -0.192 1.192 17 C 0.239 3.761 18 O -0.392 6.392 19 C -0.030 4.030 20 O -0.226 6.226 21 H 0.093 0.907 22 H 0.054 0.946 23 H 0.108 0.892 24 H 0.138 0.862 25 H 0.139 0.861 26 H 0.143 0.857 27 H 0.088 0.912 28 H 0.149 0.851 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.212 6.531 2.312 10.744 hybrid contribution -0.017 -0.354 1.023 1.082 sum 8.195 6.178 3.335 10.791 Atomic orbital electron populations 1.21014 0.89595 0.99178 1.05124 1.19546 0.97235 0.90356 1.00934 1.20849 0.93876 0.96810 1.02369 1.20688 0.93989 0.96700 1.04301 1.20261 0.99517 0.89545 1.04781 1.18665 0.88642 0.86183 1.05974 1.18744 0.89892 0.88640 1.01609 1.41550 1.09856 1.02031 1.58240 1.18852 0.78938 1.41933 1.07979 0.87290 1.25289 0.94388 0.93082 0.98727 1.69705 1.07367 1.34794 1.36250 0.86649 0.79752 0.77748 0.84013 1.20756 1.20577 1.19223 1.21297 0.88660 0.85282 0.80880 1.90604 1.69664 1.27454 1.51429 1.23213 0.91594 0.90590 0.97603 1.86092 1.46562 1.17598 1.72326 0.90729 0.94613 0.89234 0.86172 0.86135 0.85697 0.91222 0.85093 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.85 8.18 36.00 0.29 -1.55 15 2 C -0.08 -1.53 5.87 -104.48 -0.61 -2.14 15 3 C -0.12 -1.93 9.67 -39.55 -0.38 -2.31 15 4 C -0.14 -2.01 10.04 -39.52 -0.40 -2.40 15 5 C -0.12 -1.96 10.00 -39.50 -0.39 -2.35 15 6 C 0.05 1.01 6.44 -39.04 -0.25 0.76 15 7 C 0.11 2.36 6.35 -83.53 -0.53 1.83 15 8 N -0.40 -10.04 2.20 -58.79 -0.13 -10.17 15 9 C -0.35 -9.48 6.01 -14.96 -0.09 -9.57 15 10 H 0.11 3.06 6.19 -52.49 -0.32 2.73 15 11 C 0.10 2.66 4.39 -17.49 -0.08 2.58 15 12 N -0.85 -24.27 13.96 55.49 0.77 -23.49 15 13 Si 0.89 22.42 26.24 -169.99 -4.46 17.96 15 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 15 H -0.28 -7.05 7.11 56.52 0.40 -6.65 15 16 H -0.27 -6.71 5.20 56.52 0.29 -6.42 15 17 C 0.45 10.95 5.15 -10.82 -0.06 10.89 15 18 O -0.51 -14.07 14.34 5.55 0.08 -13.99 15 19 C 0.05 0.92 7.17 36.03 0.26 1.18 15 20 O -0.31 -5.95 10.45 -19.54 -0.20 -6.16 15 21 H 0.07 1.65 6.57 -51.93 -0.34 1.31 15 22 H 0.03 0.58 7.88 -51.93 -0.41 0.17 15 23 H 0.09 1.93 5.60 -51.93 -0.29 1.64 15 24 H 0.12 1.60 7.95 -52.49 -0.42 1.18 15 25 H 0.12 1.35 8.06 -52.49 -0.42 0.93 15 26 H 0.13 1.68 8.06 -52.49 -0.42 1.25 15 27 H 0.28 7.45 8.31 -40.82 -0.34 7.11 15 28 H 0.13 2.09 8.14 -51.93 -0.42 1.67 15 29 H 0.08 1.36 8.14 -51.93 -0.42 0.94 15 LS Contribution 240.78 15.07 3.63 3.63 Total: -1.00 -30.50 240.78 -5.27 -35.77 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -2.72 Total: -0.47 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -2.24 Total: -3.08 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.65 Total: -33.66 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.12 Total: -20.15 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.46 Total: 17.96 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.50 -5.27 -35.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084883721.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.768 kcal (2) G-P(sol) polarization free energy of solvation -30.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds