Wall clock time and date at job start Mon Mar 30 2020 03:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38268 * 120.09697 * 2 1 4 4 C 1.38297 * 120.21950 * 180.22446 * 3 2 1 5 5 C 1.38343 * 120.28202 * 359.47313 * 4 3 2 6 6 C 1.38366 * 119.87909 * 0.27162 * 5 4 3 7 7 C 1.38592 * 120.09822 * 179.73470 * 2 1 3 8 8 N 1.39938 * 120.74867 * 0.08732 * 7 2 1 9 9 C 1.37101 * 120.49259 * 15.43694 * 8 7 2 10 10 H 1.07999 * 119.99402 * 52.02207 * 9 8 7 11 11 C 1.38874 * 120.00102 * 232.01732 * 9 8 7 12 12 N 1.31429 * 119.99889 * 197.18773 * 11 9 8 13 13 Si 1.86796 * 119.99942 * 17.18777 * 11 9 8 14 14 H 1.48498 * 109.47241 * 85.39414 * 13 11 9 15 15 H 1.48500 * 109.47132 * 205.39192 * 13 11 9 16 16 H 1.48504 * 109.47330 * 325.39328 * 13 11 9 17 17 C 1.35080 * 119.01031 * 195.42432 * 8 7 2 18 18 O 1.21286 * 120.12505 * 181.68929 * 17 8 7 19 19 C 1.50751 * 119.75196 * 1.70636 * 17 8 7 20 20 O 1.35938 * 120.68544 * 180.02562 * 6 5 4 21 21 H 1.09006 * 109.47092 * 237.39760 * 1 2 3 22 22 H 1.09004 * 109.47347 * 357.39661 * 1 2 3 23 23 H 1.08999 * 109.47291 * 117.39852 * 1 2 3 24 24 H 1.08000 * 119.89059 * 0.02562 * 3 2 1 25 25 H 1.07995 * 119.85969 * 179.74907 * 4 3 2 26 26 H 1.07998 * 120.06095 * 180.29014 * 5 4 3 27 27 H 0.97006 * 119.99661 * 179.97438 * 12 11 9 28 28 H 1.08999 * 109.44633 * 208.62869 * 19 17 8 29 29 H 1.09000 * 109.44424 * 88.72991 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2003 1.1963 0.0000 4 6 3.5833 1.1992 -0.0047 5 6 4.2835 0.0061 0.0016 6 6 3.5976 -1.1956 0.0069 7 6 2.2020 -1.1990 0.0056 8 7 1.5203 -2.4211 0.0094 9 6 0.1873 -2.4752 -0.3066 10 1 -0.1695 -2.0248 -1.2211 11 6 -0.7041 -3.1091 0.5491 12 7 -1.8934 -3.4621 0.1152 13 14 -0.2127 -3.4599 2.3168 14 1 -0.4915 -2.2659 3.1544 15 1 -0.9928 -4.6158 2.8273 16 1 1.2370 -3.7771 2.3740 17 6 2.1953 -3.5468 0.3288 18 8 1.6320 -4.6207 0.3087 19 6 3.6512 -3.4631 0.7107 20 8 4.2691 -2.3776 0.0136 21 1 -0.3633 -0.5537 0.8658 22 1 -0.3634 1.0266 0.0467 23 1 -0.3634 -0.4729 -0.9124 24 1 1.6601 2.1315 0.0004 25 1 4.1190 2.1370 -0.0088 26 1 5.3635 0.0126 0.0026 27 1 -2.5159 -3.9052 0.7129 28 1 4.1501 -4.3952 0.4455 29 1 3.7357 -3.2999 1.7851 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084883721.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:13 Heat of formation + Delta-G solvation = -38.834941 kcal Electronic energy + Delta-G solvation = -16811.526668 eV Core-core repulsion = 14086.148652 eV Total energy + Delta-G solvation = -2725.378016 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.44596 -39.71232 -38.74001 -36.67338 -34.35574 -33.00792 -30.80647 -29.73699 -27.78561 -25.85329 -24.40192 -22.41261 -20.98459 -19.66346 -19.34751 -18.23977 -17.41254 -16.72807 -16.32150 -16.05955 -15.59492 -15.53171 -15.34414 -14.61142 -14.32230 -14.09546 -13.79268 -13.29873 -13.11656 -13.07071 -12.71466 -12.25285 -12.16491 -11.98229 -11.83931 -11.04543 -10.84611 -10.68780 -9.26205 -8.72774 -8.52391 -6.37249 0.25215 0.45408 1.06750 1.18414 1.20689 1.65617 2.06623 2.21231 2.50287 2.79708 3.00082 3.31399 3.87864 4.03488 4.14224 4.23513 4.46161 4.50029 4.71887 4.89472 4.96810 5.03976 5.29559 5.39544 5.52331 5.62275 5.68773 5.82007 5.95978 6.24222 6.49220 6.66195 7.04928 7.46493 8.50388 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.027356 B = 0.013815 C = 0.010460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.277649 B = 2026.232711 C = 2676.339261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.096 4.096 3 C -0.114 4.114 4 C -0.110 4.110 5 C -0.115 4.115 6 C 0.039 3.961 7 C 0.063 3.937 8 N -0.421 5.421 9 C -0.341 4.341 10 H 0.081 0.919 11 C 0.057 3.943 12 N -0.892 5.892 13 Si 0.930 3.070 14 H -0.265 1.265 15 H -0.284 1.284 16 H -0.266 1.266 17 C 0.431 3.569 18 O -0.564 6.564 19 C 0.059 3.941 20 O -0.309 6.309 21 H 0.043 0.957 22 H 0.071 0.929 23 H 0.059 0.941 24 H 0.155 0.845 25 H 0.172 0.828 26 H 0.160 0.840 27 H 0.279 0.721 28 H 0.160 0.840 29 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.703 10.222 3.242 15.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 C -0.132 4.132 4 C -0.128 4.128 5 C -0.133 4.133 6 C -0.007 4.007 7 C -0.032 4.032 8 N -0.134 5.134 9 C -0.467 4.467 10 H 0.099 0.901 11 C -0.150 4.150 12 N -0.528 5.528 13 Si 0.756 3.244 14 H -0.191 1.191 15 H -0.210 1.210 16 H -0.191 1.191 17 C 0.222 3.778 18 O -0.445 6.445 19 C -0.019 4.019 20 O -0.224 6.224 21 H 0.062 0.938 22 H 0.090 0.910 23 H 0.077 0.923 24 H 0.172 0.828 25 H 0.189 0.811 26 H 0.178 0.822 27 H 0.088 0.912 28 H 0.178 0.822 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.337 9.447 3.165 15.093 hybrid contribution -0.834 -1.008 0.653 1.463 sum 10.502 8.439 3.817 14.003 Atomic orbital electron populations 1.20792 0.90663 1.00424 1.02234 1.19769 0.96863 0.91399 1.01868 1.21264 0.94946 0.96485 1.00541 1.21308 0.93377 0.98190 0.99953 1.20781 1.01331 0.88452 1.02764 1.19079 0.87850 0.87420 1.06337 1.19042 0.91209 0.87858 1.05076 1.41620 1.09161 1.03781 1.58876 1.18613 0.80462 1.40775 1.06817 0.90112 1.25806 0.94404 0.93299 1.01451 1.69780 1.08536 1.37111 1.37325 0.86020 0.79369 0.77867 0.81183 1.19115 1.21019 1.19065 1.22283 0.90840 0.84480 0.80156 1.90564 1.71164 1.28871 1.53890 1.23268 0.87882 0.91942 0.98795 1.86090 1.46024 1.17654 1.72653 0.93803 0.91046 0.92273 0.82766 0.81107 0.82243 0.91152 0.82219 0.87996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.40 8.18 71.24 0.58 -2.82 15 2 C -0.10 -3.64 5.87 -19.77 -0.12 -3.76 15 3 C -0.11 -3.11 9.67 22.29 0.22 -2.90 15 4 C -0.11 -2.49 10.04 22.31 0.22 -2.26 15 5 C -0.11 -3.05 10.00 22.33 0.22 -2.83 15 6 C 0.04 1.42 6.44 22.62 0.15 1.56 15 7 C 0.06 2.71 6.35 38.25 0.24 2.95 15 8 N -0.42 -21.34 2.20 -458.13 -1.01 -22.35 15 9 C -0.34 -19.29 6.01 84.02 0.50 -18.79 15 10 H 0.08 4.90 6.19 -2.91 -0.02 4.88 15 11 C 0.06 3.28 4.39 84.91 0.37 3.66 15 12 N -0.89 -53.85 13.96 21.65 0.30 -53.55 15 13 Si 0.93 47.31 26.24 68.60 1.80 49.11 15 14 H -0.27 -12.56 7.11 99.48 0.71 -11.85 15 15 H -0.28 -14.44 7.11 99.48 0.71 -13.74 15 16 H -0.27 -13.35 5.20 99.48 0.52 -12.83 15 17 C 0.43 21.24 5.15 87.63 0.45 21.69 15 18 O -0.56 -31.78 14.34 -3.05 -0.04 -31.82 15 19 C 0.06 2.14 7.17 71.25 0.51 2.65 15 20 O -0.31 -11.04 10.45 -92.85 -0.97 -12.01 15 21 H 0.04 2.00 6.57 -2.38 -0.02 1.98 15 22 H 0.07 2.26 7.88 -2.39 -0.02 2.24 15 23 H 0.06 2.70 5.60 -2.39 -0.01 2.68 15 24 H 0.15 3.17 7.95 -2.91 -0.02 3.15 15 25 H 0.17 2.32 8.06 -2.91 -0.02 2.29 15 26 H 0.16 3.20 8.06 -2.91 -0.02 3.17 15 27 H 0.28 15.79 8.31 -92.70 -0.77 15.02 15 28 H 0.16 4.76 8.14 -2.39 -0.02 4.74 15 29 H 0.10 3.24 8.14 -2.39 -0.02 3.22 15 Total: -1.00 -70.93 240.78 4.42 -66.50 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 0.99 Total: 4.96 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 3.36 Total: -0.85 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -0.71 Total: -75.89 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -1.01 Total: -43.83 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.80 Total: 49.11 kcal Total: -70.93 4.42 -66.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084883721.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.667 kcal (2) G-P(sol) polarization free energy of solvation -70.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds