Wall clock time and date at job start Mon Mar 30 2020 03:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30890 * 1 3 3 Si 1.86794 * 120.00091 * 2 1 4 4 H 1.48499 * 109.47006 * 274.97679 * 3 2 1 5 5 H 1.48498 * 109.47228 * 34.97952 * 3 2 1 6 6 H 1.48498 * 109.47421 * 154.97943 * 3 2 1 7 7 C 1.39853 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00249 * 186.04092 * 7 2 1 9 9 C 1.41489 * 119.99779 * 6.04185 * 7 2 1 10 10 C 1.41587 * 126.20398 * 174.35127 * 9 7 2 11 11 N 1.31044 * 106.54678 * 179.97438 * 10 9 7 12 12 N 1.40046 * 107.44403 * 0.02562 * 11 10 9 13 13 C 1.39919 * 125.43530 * 179.97438 * 12 11 10 14 14 C 1.38913 * 120.08767 * 180.02562 * 13 12 11 15 15 C 1.38079 * 119.95062 * 179.97438 * 14 13 12 16 16 C 1.38334 * 120.12367 * 0.02562 * 15 14 13 17 17 C 1.38253 * 120.17739 * 0.02562 * 16 15 14 18 18 C 1.38321 * 120.05098 * 359.97438 * 17 16 15 19 19 F 1.35103 * 120.06661 * 180.02562 * 18 17 16 20 20 N 1.28697 * 109.13578 * 0.23843 * 12 11 10 21 21 H 0.96993 * 120.00271 * 0.02562 * 1 2 3 22 22 H 1.08008 * 126.73018 * 359.93675 * 10 9 7 23 23 H 1.08002 * 120.02868 * 359.95847 * 14 13 12 24 24 H 1.07995 * 119.94475 * 180.02562 * 15 14 13 25 25 H 1.08002 * 119.91416 * 180.27560 * 16 15 14 26 26 H 1.08007 * 119.97557 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3852 2.1070 -1.3948 5 1 1.4970 2.6199 0.8026 6 1 3.5891 1.4121 0.5921 7 6 2.0082 -1.2112 0.0005 8 1 3.0837 -1.2138 0.0990 9 6 1.3066 -2.4331 -0.1279 10 6 1.8840 -3.7196 -0.2555 11 7 0.8893 -4.5677 -0.3470 12 7 -0.2992 -3.8299 -0.2790 13 6 -1.5906 -4.3647 -0.3409 14 6 -2.6958 -3.5267 -0.2627 15 6 -3.9691 -4.0574 -0.3247 16 6 -4.1463 -5.4222 -0.4639 17 6 -3.0501 -6.2611 -0.5412 18 6 -1.7714 -5.7373 -0.4799 19 9 -0.6999 -6.5567 -0.5559 20 7 -0.0139 -2.5810 -0.1560 21 1 -0.4850 0.8400 -0.0004 22 1 2.9378 -3.9556 -0.2745 23 1 -2.5593 -2.4609 -0.1533 24 1 -4.8282 -3.4058 -0.2643 25 1 -5.1437 -5.8332 -0.5165 26 1 -3.1923 -7.3262 -0.6503 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084930505.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:23 Heat of formation + Delta-G solvation = 87.240014 kcal Electronic energy + Delta-G solvation = -15436.352374 eV Core-core repulsion = 12625.273825 eV Total energy + Delta-G solvation = -2811.078549 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.066 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.18325 -40.58624 -38.31510 -33.81321 -32.54194 -30.44170 -30.04184 -28.82014 -25.80767 -22.79126 -22.49270 -20.39440 -20.13360 -17.35893 -16.91724 -16.47320 -15.56567 -15.25996 -14.92829 -14.41212 -14.15086 -13.68238 -13.21895 -13.14582 -12.57908 -11.91507 -11.74303 -11.57578 -11.28951 -10.98560 -10.76517 -10.39548 -9.83929 -9.71720 -9.37916 -8.84167 -8.54621 -8.39789 -7.30277 -6.58578 -4.43461 1.35565 1.55891 3.02116 3.11770 3.12629 3.15533 3.41639 3.98146 4.01155 4.20966 4.65013 4.99609 5.17835 5.32832 5.52224 5.62037 5.79050 6.06630 6.25929 6.43586 6.48995 6.74942 6.78287 7.10492 7.15425 7.27884 7.49411 8.01694 8.35868 8.60869 8.88423 9.95756 10.38792 Molecular weight = 233.07amu Principal moments of inertia in cm(-1) A = 0.040044 B = 0.007487 C = 0.006325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.060233 B = 3738.810917 C = 4425.561029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.430 4.430 8 H 0.090 0.910 9 C 0.155 3.845 10 C -0.010 4.010 11 N -0.308 5.308 12 N -0.228 5.228 13 C 0.188 3.812 14 C -0.113 4.113 15 C -0.105 4.105 16 C -0.137 4.137 17 C -0.133 4.133 18 C 0.062 3.938 19 F -0.125 7.125 20 N -0.310 5.310 21 H 0.275 0.725 22 H 0.185 0.815 23 H 0.151 0.849 24 H 0.129 0.871 25 H 0.127 0.873 26 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.224 -4.721 -0.566 7.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.152 4.152 3 Si 0.739 3.261 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.470 4.470 8 H 0.108 0.892 9 C 0.001 3.999 10 C -0.206 4.206 11 N -0.133 5.133 12 N -0.110 5.110 13 C 0.089 3.911 14 C -0.135 4.135 15 C -0.124 4.124 16 C -0.157 4.157 17 C -0.153 4.153 18 C 0.038 3.962 19 F -0.104 7.104 20 N -0.150 5.150 21 H 0.085 0.915 22 H 0.201 0.799 23 H 0.168 0.832 24 H 0.147 0.853 25 H 0.145 0.855 26 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.557 -5.252 -0.634 8.426 hybrid contribution 1.542 1.028 0.009 1.853 sum -5.016 -4.224 -0.626 6.587 Atomic orbital electron populations 1.69948 1.07119 1.28206 1.33838 1.25821 0.94899 1.00854 0.93642 0.86202 0.80246 0.80850 0.78815 1.19727 1.20398 1.18646 1.18722 0.94277 0.87753 1.46239 0.89198 1.20498 0.87609 0.93383 0.98361 1.25213 0.98594 0.93093 1.03728 1.77443 0.92016 1.23066 1.20813 1.47793 1.02347 1.02886 1.57928 1.17359 0.82019 0.90527 1.01216 1.20933 0.89799 1.01232 1.01517 1.20970 0.96362 0.95090 0.99950 1.20810 0.97978 0.93337 1.03553 1.20861 0.90240 1.00640 1.03543 1.17299 0.84325 0.86082 1.08480 1.91526 1.53980 1.71098 1.93772 1.74977 1.15625 0.94589 1.29854 0.91480 0.79861 0.83177 0.85285 0.85547 0.84934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.44 11.97 55.54 0.66 -19.78 15 2 C 0.07 1.74 5.49 -17.35 -0.10 1.64 15 3 Si 0.91 18.62 29.56 -169.99 -5.03 13.59 15 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 15 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 15 7 C -0.43 -11.22 9.40 -37.74 -0.35 -11.57 15 8 H 0.09 2.13 7.85 -52.49 -0.41 1.72 15 9 C 0.16 4.23 6.76 -84.89 -0.57 3.65 15 10 C -0.01 -0.24 12.13 -16.61 -0.20 -0.44 15 11 N -0.31 -7.83 10.78 31.03 0.33 -7.50 15 12 N -0.23 -5.95 4.43 32.51 0.14 -5.81 15 13 C 0.19 4.23 6.75 -83.58 -0.56 3.67 15 14 C -0.11 -2.22 9.60 -39.39 -0.38 -2.60 15 15 C -0.10 -1.58 10.04 -39.60 -0.40 -1.98 15 16 C -0.14 -1.87 10.04 -39.54 -0.40 -2.27 15 17 C -0.13 -2.06 10.02 -39.55 -0.40 -2.45 15 18 C 0.06 1.23 7.29 -39.21 -0.29 0.94 15 19 F -0.13 -2.67 15.49 2.25 0.03 -2.64 15 20 N -0.31 -8.72 9.52 32.24 0.31 -8.41 15 21 H 0.27 6.69 8.30 -40.82 -0.34 6.35 15 22 H 0.18 3.57 8.06 -52.48 -0.42 3.14 15 23 H 0.15 3.22 7.67 -52.49 -0.40 2.81 15 24 H 0.13 1.54 8.06 -52.49 -0.42 1.11 15 25 H 0.13 1.27 8.06 -52.49 -0.42 0.84 15 26 H 0.13 1.65 8.06 -52.48 -0.42 1.23 15 LS Contribution 246.62 15.07 3.72 3.72 Total: -1.00 -31.01 246.62 -5.11 -36.12 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -1.64 Total: 2.11 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -3.64 Total: -11.41 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 1.45 Total: -41.49 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.03 Total: -2.64 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.01 -5.11 -36.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084930505.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.363 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds