Wall clock time and date at job start Mon Mar 30 2020 03:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30890 * 1 3 3 Si 1.86794 * 120.00091 * 2 1 4 4 H 1.48499 * 109.47006 * 274.97679 * 3 2 1 5 5 H 1.48498 * 109.47228 * 34.97952 * 3 2 1 6 6 H 1.48498 * 109.47421 * 154.97943 * 3 2 1 7 7 C 1.39853 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00249 * 186.04092 * 7 2 1 9 9 C 1.41489 * 119.99779 * 6.04185 * 7 2 1 10 10 C 1.41587 * 126.20398 * 174.35127 * 9 7 2 11 11 N 1.31044 * 106.54678 * 179.97438 * 10 9 7 12 12 N 1.40046 * 107.44403 * 0.02562 * 11 10 9 13 13 C 1.39919 * 125.43530 * 179.97438 * 12 11 10 14 14 C 1.38913 * 120.08767 * 180.02562 * 13 12 11 15 15 C 1.38079 * 119.95062 * 179.97438 * 14 13 12 16 16 C 1.38334 * 120.12367 * 0.02562 * 15 14 13 17 17 C 1.38253 * 120.17739 * 0.02562 * 16 15 14 18 18 C 1.38321 * 120.05098 * 359.97438 * 17 16 15 19 19 F 1.35103 * 120.06661 * 180.02562 * 18 17 16 20 20 N 1.28697 * 109.13578 * 0.23843 * 12 11 10 21 21 H 0.96993 * 120.00271 * 0.02562 * 1 2 3 22 22 H 1.08008 * 126.73018 * 359.93675 * 10 9 7 23 23 H 1.08002 * 120.02868 * 359.95847 * 14 13 12 24 24 H 1.07995 * 119.94475 * 180.02562 * 15 14 13 25 25 H 1.08002 * 119.91416 * 180.27560 * 16 15 14 26 26 H 1.08007 * 119.97557 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3852 2.1070 -1.3948 5 1 1.4970 2.6199 0.8026 6 1 3.5891 1.4121 0.5921 7 6 2.0082 -1.2112 0.0005 8 1 3.0837 -1.2138 0.0990 9 6 1.3066 -2.4331 -0.1279 10 6 1.8840 -3.7196 -0.2555 11 7 0.8893 -4.5677 -0.3470 12 7 -0.2992 -3.8299 -0.2790 13 6 -1.5906 -4.3647 -0.3409 14 6 -2.6958 -3.5267 -0.2627 15 6 -3.9691 -4.0574 -0.3247 16 6 -4.1463 -5.4222 -0.4639 17 6 -3.0501 -6.2611 -0.5412 18 6 -1.7714 -5.7373 -0.4799 19 9 -0.6999 -6.5567 -0.5559 20 7 -0.0139 -2.5810 -0.1560 21 1 -0.4850 0.8400 -0.0004 22 1 2.9378 -3.9556 -0.2745 23 1 -2.5593 -2.4609 -0.1533 24 1 -4.8282 -3.4058 -0.2643 25 1 -5.1437 -5.8332 -0.5165 26 1 -3.1923 -7.3262 -0.6503 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084930505.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:23 Heat of formation + Delta-G solvation = 67.221271 kcal Electronic energy + Delta-G solvation = -15437.220452 eV Core-core repulsion = 12625.273825 eV Total energy + Delta-G solvation = -2811.946627 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.066 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.75252 -42.45699 -39.73650 -35.66155 -34.23054 -32.25685 -31.50713 -30.53046 -27.61454 -24.46192 -23.98296 -22.04813 -21.94539 -19.04759 -18.76080 -18.00376 -17.07456 -16.91736 -16.62180 -15.96255 -15.80793 -15.19804 -14.97718 -14.74781 -14.07479 -13.54404 -13.39741 -12.95286 -12.84624 -12.70741 -12.22752 -12.07125 -11.58121 -11.51417 -11.21580 -10.81635 -10.33909 -9.85427 -9.03096 -8.46207 -6.41269 -0.13165 0.18765 1.37220 1.42152 1.45775 1.60627 1.73363 2.16070 2.29620 2.70439 3.19354 3.37847 3.54472 3.90060 4.15412 4.33175 4.36753 4.50439 4.67977 5.06914 5.12520 5.24943 5.31232 5.43655 5.45639 5.60266 5.82729 6.19199 6.48111 6.70860 6.94486 8.02114 8.53915 Molecular weight = 233.07amu Principal moments of inertia in cm(-1) A = 0.040044 B = 0.007487 C = 0.006325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.060233 B = 3738.810917 C = 4425.561029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.020 3.980 3 Si 0.997 3.003 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.249 1.249 7 C -0.459 4.459 8 H 0.107 0.893 9 C 0.120 3.880 10 C -0.017 4.017 11 N -0.322 5.322 12 N -0.241 5.241 13 C 0.131 3.869 14 C -0.130 4.130 15 C -0.090 4.090 16 C -0.104 4.104 17 C -0.120 4.120 18 C 0.040 3.960 19 F -0.141 7.141 20 N -0.337 5.337 21 H 0.279 0.721 22 H 0.223 0.777 23 H 0.119 0.881 24 H 0.169 0.831 25 H 0.185 0.815 26 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.983 -5.376 -0.710 8.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.196 4.196 3 Si 0.817 3.183 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.172 1.172 7 C -0.499 4.499 8 H 0.125 0.875 9 C -0.034 4.034 10 C -0.212 4.212 11 N -0.149 5.149 12 N -0.126 5.126 13 C 0.035 3.965 14 C -0.151 4.151 15 C -0.109 4.109 16 C -0.122 4.122 17 C -0.139 4.139 18 C 0.017 3.983 19 F -0.120 7.120 20 N -0.177 5.177 21 H 0.089 0.911 22 H 0.239 0.761 23 H 0.137 0.863 24 H 0.186 0.814 25 H 0.202 0.798 26 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.351 -5.946 -0.779 10.280 hybrid contribution 1.808 1.061 0.041 2.097 sum -6.542 -4.885 -0.737 8.198 Atomic orbital electron populations 1.70082 1.09061 1.29427 1.35115 1.26867 0.95677 1.04645 0.92422 0.84962 0.79054 0.75385 0.78860 1.19300 1.20027 1.17216 1.19203 0.95287 0.88191 1.47257 0.87494 1.21014 0.87946 0.95038 0.99403 1.25733 1.00130 0.91825 1.03562 1.77323 0.92384 1.23692 1.21484 1.48080 1.03598 1.02347 1.58543 1.18052 0.81373 0.92319 1.04788 1.20949 0.91426 0.99750 1.03018 1.21448 0.95223 0.96764 0.97464 1.21491 0.99908 0.92082 0.98750 1.21398 0.88403 1.02936 1.01164 1.17800 0.85722 0.85121 1.09625 1.91477 1.55209 1.71203 1.94071 1.74850 1.16620 0.96187 1.30056 0.91106 0.76109 0.86266 0.81363 0.79787 0.81086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.10 11.97 21.81 0.26 -44.84 15 2 C 0.02 1.06 5.49 85.22 0.47 1.53 15 3 Si 1.00 38.62 29.56 68.60 2.03 40.65 15 4 H -0.27 -10.12 7.11 99.48 0.71 -9.41 15 5 H -0.28 -10.38 7.11 99.48 0.71 -9.67 15 6 H -0.25 -9.00 7.11 99.48 0.71 -8.29 15 7 C -0.46 -24.73 9.40 23.46 0.22 -24.51 15 8 H 0.11 5.14 7.85 -2.91 -0.02 5.11 15 9 C 0.12 6.84 6.76 40.61 0.27 7.12 15 10 C -0.02 -0.87 12.13 85.64 1.04 0.17 15 11 N -0.32 -17.09 10.78 -55.76 -0.60 -17.70 15 12 N -0.24 -13.26 4.43 -51.07 -0.23 -13.49 15 13 C 0.13 6.08 6.75 38.23 0.26 6.34 15 14 C -0.13 -5.18 9.60 22.39 0.22 -4.97 15 15 C -0.09 -2.43 10.04 22.25 0.22 -2.21 15 16 C -0.10 -2.25 10.04 22.30 0.22 -2.02 15 17 C -0.12 -3.24 10.02 22.29 0.22 -3.02 15 18 C 0.04 1.59 7.29 22.51 0.16 1.75 15 19 F -0.14 -6.09 15.49 44.97 0.70 -5.39 15 20 N -0.34 -20.01 9.52 -51.92 -0.49 -20.50 15 21 H 0.28 14.14 8.30 -92.71 -0.77 13.37 15 22 H 0.22 8.72 8.06 -2.91 -0.02 8.69 15 23 H 0.12 5.46 7.67 -2.91 -0.02 5.43 15 24 H 0.17 3.20 8.06 -2.91 -0.02 3.18 15 25 H 0.18 2.10 8.06 -2.91 -0.02 2.07 15 26 H 0.17 3.32 8.06 -2.91 -0.02 3.30 15 Total: -1.00 -73.50 246.62 6.19 -67.32 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 1.21 Total: 13.78 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 3.31 Total: -19.83 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -1.06 Total: -96.52 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 0.70 Total: -5.39 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -73.50 6.19 -67.32 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084930505.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.537 kcal (2) G-P(sol) polarization free energy of solvation -73.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds