Wall clock time and date at job start Mon Mar 30 2020 02:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31594 * 1 3 3 Si 1.86799 * 120.00257 * 2 1 4 4 H 1.48501 * 109.47049 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47083 * 300.00481 * 3 2 1 6 6 H 1.48498 * 109.46860 * 60.00278 * 3 2 1 7 7 C 1.38794 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99896 * 190.09693 * 7 2 1 9 9 N 1.36855 * 120.00110 * 10.09359 * 7 2 1 10 10 C 1.39192 * 124.91720 * 197.05410 * 9 7 2 11 11 C 1.39840 * 129.32997 * 0.02562 * 10 9 7 12 12 C 1.37768 * 120.26489 * 179.97438 * 11 10 9 13 13 C 1.38350 * 120.25022 * 0.02562 * 12 11 10 14 14 C 1.38279 * 119.85954 * 0.02562 * 13 12 11 15 15 C 1.38105 * 120.16027 * 0.02562 * 14 13 12 16 16 C 1.51221 * 131.03230 * 180.02562 * 15 14 13 17 17 C 1.46521 * 124.91791 * 17.08578 * 9 7 2 18 18 H 1.09002 * 110.29865 * 298.90627 * 17 9 7 19 19 C 1.50700 * 110.30202 * 61.04739 * 17 9 7 20 20 O 1.20818 * 119.99995 * 15.76181 * 19 17 9 21 21 O 1.34237 * 119.99799 * 195.76650 * 19 17 9 22 22 H 0.97002 * 119.99899 * 4.96585 * 1 2 3 23 23 H 1.08008 * 119.86750 * 0.02562 * 11 10 9 24 24 H 1.07995 * 119.87970 * 180.02562 * 12 11 10 25 25 H 1.08001 * 120.06966 * 180.02562 * 13 12 11 26 26 H 1.08005 * 119.92113 * 179.97438 * 14 13 12 27 27 H 1.08996 * 110.43574 * 61.24305 * 16 15 14 28 28 H 1.09003 * 110.42938 * 298.74241 * 16 15 14 29 29 H 0.96699 * 116.99337 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 3.7100 1.3462 -0.0006 5 1 1.8912 2.3964 -1.2124 6 1 1.8913 2.3963 1.2125 7 6 2.0099 -1.2020 -0.0005 8 1 3.0774 -1.2094 0.1634 9 7 1.3415 -2.3779 -0.2088 10 6 1.8392 -3.6419 0.0949 11 6 3.0702 -3.9988 0.6542 12 6 3.3730 -5.3240 0.8780 13 6 2.4616 -6.3121 0.5508 14 6 1.2425 -5.9680 -0.0036 15 6 0.9336 -4.6413 -0.2314 16 6 -0.3036 -3.9961 -0.8143 17 6 -0.0014 -2.4888 -0.7843 18 1 -0.7256 -1.9685 -0.1574 19 6 -0.0192 -1.9265 -2.1823 20 8 1.0190 -1.7372 -2.7705 21 8 -1.1886 -1.6360 -2.7740 22 1 -0.4850 0.8369 -0.0727 23 1 3.7861 -3.2324 0.9124 24 1 4.3254 -5.5926 1.3107 25 1 2.7019 -7.3501 0.7279 26 1 0.5305 -6.7386 -0.2599 27 1 -1.1751 -4.2191 -0.1989 28 1 -0.4629 -4.3347 -1.8381 29 1 -1.1493 -1.2771 -3.6711 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087655809.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:49 Heat of formation + Delta-G solvation = -47.291022 kcal Electronic energy + Delta-G solvation = -16448.351780 eV Core-core repulsion = 13722.607081 eV Total energy + Delta-G solvation = -2725.744699 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.08184 -38.55917 -35.86329 -34.96932 -32.96633 -31.17337 -28.62349 -28.44557 -24.96660 -23.71185 -20.99626 -20.57084 -20.07402 -17.45643 -17.26793 -16.12931 -15.52303 -15.03099 -14.73462 -14.50830 -13.95970 -13.34180 -13.00453 -12.86346 -12.07528 -11.98172 -11.77743 -11.53900 -11.29801 -11.11561 -10.75179 -10.68630 -10.45147 -10.30453 -10.00127 -9.90675 -9.35531 -8.69422 -7.91960 -6.81325 -6.35197 -3.84561 2.32685 2.48451 3.13702 3.17675 3.20916 3.23489 3.80981 4.06126 4.61716 4.74531 5.11810 5.46757 5.52206 5.81802 5.92802 5.96904 6.11072 6.22816 6.42805 6.51540 6.73265 6.88892 6.96557 7.24906 7.30841 7.32387 7.46613 7.49430 7.61120 8.02778 8.44900 8.85362 9.09554 9.54829 10.56509 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.025524 B = 0.011411 C = 0.008666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.749441 B = 2453.198934 C = 3230.231809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.021 3.979 3 Si 0.932 3.068 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.274 4.274 8 H 0.100 0.900 9 N -0.426 5.426 10 C 0.204 3.796 11 C -0.200 4.200 12 C -0.066 4.066 13 C -0.234 4.234 14 C -0.048 4.048 15 C -0.219 4.219 16 C -0.069 4.069 17 C 0.166 3.834 18 H 0.144 0.856 19 C 0.487 3.513 20 O -0.513 6.513 21 O -0.522 6.522 22 H 0.271 0.729 23 H 0.107 0.893 24 H 0.106 0.894 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.531 -5.095 -1.187 5.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.180 4.180 3 Si 0.759 3.241 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.402 4.402 8 H 0.118 0.882 9 N -0.113 5.113 10 C 0.088 3.912 11 C -0.224 4.224 12 C -0.085 4.085 13 C -0.256 4.256 14 C -0.067 4.067 15 C -0.225 4.225 16 C -0.107 4.107 17 C 0.060 3.940 18 H 0.161 0.839 19 C 0.328 3.672 20 O -0.399 6.399 21 O -0.333 6.333 22 H 0.082 0.918 23 H 0.126 0.874 24 H 0.124 0.876 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -1.463 -4.624 -0.932 4.939 hybrid contribution 0.431 1.317 -0.804 1.602 sum -1.032 -3.307 -1.736 3.875 Atomic orbital electron populations 1.69825 1.05677 1.28178 1.49239 1.25237 0.95782 0.99755 0.97242 0.85747 0.79559 0.80999 0.77813 1.19240 1.20665 1.20559 1.19474 0.92873 0.82185 1.45656 0.88245 1.42453 1.13463 1.02353 1.53036 1.18374 0.93485 0.85271 0.94027 1.20062 0.96432 0.95844 1.10105 1.20506 0.97890 0.92292 0.97813 1.20334 0.96127 0.97834 1.11320 1.19980 0.96051 0.93282 0.97350 1.19583 0.97189 0.93393 1.12351 1.20915 0.97025 0.92030 1.00729 1.21125 0.89847 0.94301 0.88776 0.83927 1.24176 0.80358 0.73933 0.88705 1.90614 1.34136 1.50185 1.64963 1.84590 1.36963 1.77405 1.34300 0.91838 0.87442 0.87630 0.87829 0.87873 0.89737 0.91254 0.75242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.36 10.03 55.49 0.56 -22.80 15 2 C 0.02 0.56 5.10 -17.45 -0.09 0.47 15 3 Si 0.93 20.83 29.57 -169.99 -5.03 15.80 15 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 7 C -0.27 -7.37 9.10 -15.10 -0.14 -7.51 15 8 H 0.10 2.63 7.37 -52.48 -0.39 2.24 15 9 N -0.43 -10.92 2.62 -106.75 -0.28 -11.20 15 10 C 0.20 4.85 6.64 -83.72 -0.56 4.29 15 11 C -0.20 -4.36 9.75 -39.15 -0.38 -4.74 15 12 C -0.07 -1.23 10.02 -39.71 -0.40 -1.63 15 13 C -0.23 -4.19 10.06 -39.52 -0.40 -4.59 15 14 C -0.05 -0.88 10.03 -39.61 -0.40 -1.28 15 15 C -0.22 -4.64 6.24 -104.22 -0.65 -5.29 15 16 C -0.07 -1.37 6.57 -27.23 -0.18 -1.55 15 17 C 0.17 3.89 2.81 -68.68 -0.19 3.70 15 18 H 0.14 3.52 6.41 -51.93 -0.33 3.19 15 19 C 0.49 11.35 6.12 36.01 0.22 11.57 15 20 O -0.51 -13.51 16.83 -18.74 -0.32 -13.82 15 21 O -0.52 -9.94 13.42 -39.28 -0.53 -10.47 15 22 H 0.27 6.80 8.32 -40.82 -0.34 6.46 15 23 H 0.11 2.29 7.60 -52.48 -0.40 1.89 15 24 H 0.11 1.65 8.06 -52.49 -0.42 1.23 15 25 H 0.10 1.56 8.06 -52.49 -0.42 1.14 15 26 H 0.10 1.60 8.06 -52.48 -0.42 1.18 15 27 H 0.08 1.45 8.14 -51.93 -0.42 1.02 15 28 H 0.07 1.27 7.70 -51.93 -0.40 0.87 15 29 H 0.39 5.59 9.10 45.56 0.41 6.00 15 LS Contribution 255.05 15.07 3.84 3.84 Total: -1.00 -30.28 255.05 -6.84 -37.12 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -1.93 Total: 8.08 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -3.16 Total: -6.55 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.28 Total: -34.00 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.84 Total: -24.29 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.28 -6.84 -37.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087655809.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.172 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds