Wall clock time and date at job start Mon Mar 30 2020 03:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86805 * 120.00185 * 2 1 4 4 H 1.48491 * 109.47531 * 240.00226 * 3 2 1 5 5 H 1.48501 * 109.46707 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47108 * 119.99663 * 3 2 1 7 7 C 1.39892 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00381 * 193.09388 * 7 2 1 9 9 C 1.41158 * 119.99935 * 13.09564 * 7 2 1 10 10 C 1.40869 * 120.16584 * 28.41112 * 9 7 2 11 11 C 1.36374 * 119.82940 * 180.25047 * 10 9 7 12 12 C 1.39478 * 120.16990 * 359.46441 * 11 10 9 13 13 N 1.39255 * 119.83497 * 180.29509 * 12 11 10 14 14 C 1.47090 * 125.55871 * 173.96339 * 13 12 11 15 15 C 1.54089 * 103.77682 * 179.87237 * 14 13 12 16 16 O 1.45705 * 104.00902 * 0.37791 * 15 14 13 17 17 C 1.33776 * 109.47414 * 359.74983 * 16 15 14 18 18 O 1.21505 * 123.07332 * 179.97438 * 17 16 15 19 19 C 1.39473 * 120.33118 * 0.26724 * 12 11 10 20 20 C 1.36374 * 120.17311 * 0.02562 * 19 12 11 21 21 H 0.96999 * 119.99988 * 0.02562 * 1 2 3 22 22 H 1.08006 * 120.08318 * 359.97438 * 10 9 7 23 23 H 1.08003 * 119.91528 * 179.72987 * 11 10 9 24 24 H 1.09000 * 110.56671 * 298.57127 * 14 13 12 25 25 H 1.08994 * 110.56189 * 61.43039 * 14 13 12 26 26 H 1.09000 * 110.73604 * 241.64327 * 15 14 13 27 27 H 1.09005 * 110.43073 * 118.95978 * 15 14 13 28 28 H 1.08000 * 119.91292 * 180.02562 * 19 12 11 29 29 H 1.07992 * 120.09186 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0966 1.6965 -1.2124 5 1 1.2778 2.7464 0.0006 6 1 3.0966 1.6964 1.2125 7 6 2.0083 -1.2115 -0.0005 8 1 3.0672 -1.2237 0.2113 9 6 1.3301 -2.4179 -0.2781 10 6 0.1880 -2.4144 -1.1027 11 6 -0.4649 -3.5833 -1.3622 12 6 0.0018 -4.7817 -0.8224 13 7 -0.6667 -5.9720 -1.0969 14 6 -0.2181 -7.3159 -0.7015 15 6 -1.3174 -8.2459 -1.2502 16 8 -2.2555 -7.3390 -1.8986 17 6 -1.8207 -6.0804 -1.7694 18 8 -2.4174 -5.1232 -2.2211 19 6 1.1352 -4.7939 -0.0096 20 6 1.7953 -3.6323 0.2637 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1721 -1.4878 -1.5248 23 1 -1.3432 -3.5815 -1.9907 24 1 0.7447 -7.5476 -1.1570 25 1 -0.1585 -7.3956 0.3839 26 1 -1.8063 -8.7858 -0.4393 27 1 -0.8983 -8.9442 -1.9748 28 1 1.4910 -5.7258 0.4044 29 1 2.6729 -3.6434 0.8928 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093965582.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:17 Heat of formation + Delta-G solvation = -42.151909 kcal Electronic energy + Delta-G solvation = -15766.242896 eV Core-core repulsion = 13040.721046 eV Total energy + Delta-G solvation = -2725.521850 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.37572 -37.87442 -36.74249 -35.13438 -33.23838 -30.23153 -29.47174 -28.78306 -25.38962 -23.76539 -22.15066 -20.66041 -20.06588 -17.39972 -17.30222 -17.13930 -16.46034 -15.36060 -14.60361 -14.28138 -13.97754 -13.87790 -13.51422 -13.03201 -12.73804 -12.36873 -12.07141 -11.81914 -11.51360 -11.13876 -11.07529 -10.62822 -10.53322 -10.26563 -9.85710 -9.56004 -9.13527 -8.90528 -7.63497 -6.97634 -6.72869 -4.32866 2.53648 2.86348 2.95867 3.05707 3.07796 3.10334 3.41501 3.73250 3.93134 4.23675 4.58758 4.73465 4.93341 5.24591 5.49802 5.54278 5.65783 6.04410 6.41393 6.64125 6.95573 6.98414 7.13446 7.22618 7.55778 7.57162 7.81884 8.00713 8.11833 8.21581 8.54191 8.59775 8.85440 8.93081 10.20550 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.057271 B = 0.006152 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.789512 B = 4550.533187 C = 4963.841636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.460 4.460 8 H 0.078 0.922 9 C 0.101 3.899 10 C -0.140 4.140 11 C -0.118 4.118 12 C 0.027 3.973 13 N -0.544 5.544 14 C 0.062 3.938 15 C 0.042 3.958 16 O -0.336 6.336 17 C 0.628 3.372 18 O -0.514 6.514 19 C -0.112 4.112 20 C -0.207 4.207 21 H 0.282 0.718 22 H 0.123 0.877 23 H 0.127 0.873 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 -11.013 0.119 11.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.490 4.490 8 H 0.096 0.904 9 C 0.099 3.901 10 C -0.160 4.160 11 C -0.138 4.138 12 C -0.063 4.063 13 N -0.281 5.281 14 C -0.061 4.061 15 C -0.033 4.033 16 O -0.246 6.246 17 C 0.383 3.617 18 O -0.399 6.399 19 C -0.132 4.132 20 C -0.227 4.227 21 H 0.093 0.907 22 H 0.141 0.859 23 H 0.145 0.855 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.110 0.890 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.582 -10.460 -0.219 10.478 hybrid contribution 0.517 0.560 0.281 0.812 sum 1.099 -9.900 0.061 9.961 Atomic orbital electron populations 1.69813 1.07465 1.29410 1.35390 1.25921 0.94817 1.01313 0.92420 0.86317 0.80009 0.80194 0.79880 1.18853 1.20329 1.19061 1.19493 0.96526 0.90746 1.42250 0.90418 1.17698 0.91615 0.92159 0.88661 1.21039 0.98350 0.96392 1.00254 1.20935 1.00835 0.91082 1.00967 1.16972 0.98067 0.82214 1.09024 1.44920 1.22140 1.06441 1.54614 1.22764 0.98913 0.82159 1.02307 1.24232 0.88681 0.92157 0.98249 1.87253 1.47336 1.17213 1.72842 1.18439 0.81037 0.82624 0.79631 1.90934 1.61002 1.34536 1.53470 1.19871 0.95764 0.97501 1.00082 1.20567 1.03222 0.92702 1.06176 0.90697 0.85879 0.85502 0.88984 0.89047 0.87911 0.87944 0.89046 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.84 10.94 55.54 0.61 -20.23 15 2 C 0.07 1.83 5.21 -17.34 -0.09 1.74 15 3 Si 0.91 18.65 29.58 -169.99 -5.03 13.63 15 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 15 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 15 6 H -0.27 -5.35 7.11 56.52 0.40 -4.94 15 7 C -0.46 -12.07 9.04 -37.86 -0.34 -12.41 15 8 H 0.08 1.93 7.88 -52.49 -0.41 1.51 15 9 C 0.10 2.68 5.55 -106.80 -0.59 2.09 15 10 C -0.14 -3.76 8.60 -39.26 -0.34 -4.10 15 11 C -0.12 -3.01 9.22 -39.79 -0.37 -3.38 15 12 C 0.03 0.61 6.63 -83.57 -0.55 0.05 15 13 N -0.54 -10.33 3.14 -118.12 -0.37 -10.71 15 14 C 0.06 0.76 6.47 -3.15 -0.02 0.74 15 15 C 0.04 0.42 8.23 37.73 0.31 0.73 15 16 O -0.34 -5.45 11.09 -37.84 -0.42 -5.87 15 17 C 0.63 12.74 8.76 53.71 0.47 13.21 15 18 O -0.51 -12.45 14.73 -19.11 -0.28 -12.74 15 19 C -0.11 -2.40 9.42 -39.79 -0.37 -2.77 15 20 C -0.21 -4.89 9.74 -39.26 -0.38 -5.27 15 21 H 0.28 6.77 8.30 -40.82 -0.34 6.43 15 22 H 0.12 3.41 6.27 -52.48 -0.33 3.08 15 23 H 0.13 3.32 5.25 -52.48 -0.28 3.04 15 24 H 0.09 0.96 8.14 -51.93 -0.42 0.54 15 25 H 0.09 0.97 8.10 -51.93 -0.42 0.55 15 26 H 0.10 0.73 8.14 -51.93 -0.42 0.31 15 27 H 0.10 0.72 8.14 -51.93 -0.42 0.29 15 28 H 0.09 1.61 7.26 -52.49 -0.38 1.23 15 29 H 0.10 2.15 8.06 -52.49 -0.42 1.73 15 LS Contribution 253.21 15.07 3.82 3.82 Total: -1.00 -31.20 253.21 -6.60 -37.81 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -2.65 Total: 3.65 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -2.28 Total: -9.35 kcal Atomic # 7 Polarization: -31.17 SS G_CDS: 0.24 Total: -30.94 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.70 Total: -18.60 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.20 -6.60 -37.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093965582.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.345 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds