Wall clock time and date at job start Mon Mar 30 2020 03:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86805 * 120.00185 * 2 1 4 4 H 1.48491 * 109.47531 * 240.00226 * 3 2 1 5 5 H 1.48501 * 109.46707 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47108 * 119.99663 * 3 2 1 7 7 C 1.39892 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00381 * 193.09388 * 7 2 1 9 9 C 1.41158 * 119.99935 * 13.09564 * 7 2 1 10 10 C 1.40869 * 120.16584 * 28.41112 * 9 7 2 11 11 C 1.36374 * 119.82940 * 180.25047 * 10 9 7 12 12 C 1.39478 * 120.16990 * 359.46441 * 11 10 9 13 13 N 1.39255 * 119.83497 * 180.29509 * 12 11 10 14 14 C 1.47090 * 125.55871 * 173.96339 * 13 12 11 15 15 C 1.54089 * 103.77682 * 179.87237 * 14 13 12 16 16 O 1.45705 * 104.00902 * 0.37791 * 15 14 13 17 17 C 1.33776 * 109.47414 * 359.74983 * 16 15 14 18 18 O 1.21505 * 123.07332 * 179.97438 * 17 16 15 19 19 C 1.39473 * 120.33118 * 0.26724 * 12 11 10 20 20 C 1.36374 * 120.17311 * 0.02562 * 19 12 11 21 21 H 0.96999 * 119.99988 * 0.02562 * 1 2 3 22 22 H 1.08006 * 120.08318 * 359.97438 * 10 9 7 23 23 H 1.08003 * 119.91528 * 179.72987 * 11 10 9 24 24 H 1.09000 * 110.56671 * 298.57127 * 14 13 12 25 25 H 1.08994 * 110.56189 * 61.43039 * 14 13 12 26 26 H 1.09000 * 110.73604 * 241.64327 * 15 14 13 27 27 H 1.09005 * 110.43073 * 118.95978 * 15 14 13 28 28 H 1.08000 * 119.91292 * 180.02562 * 19 12 11 29 29 H 1.07992 * 120.09186 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0966 1.6965 -1.2124 5 1 1.2778 2.7464 0.0006 6 1 3.0966 1.6964 1.2125 7 6 2.0083 -1.2115 -0.0005 8 1 3.0672 -1.2237 0.2113 9 6 1.3301 -2.4179 -0.2781 10 6 0.1880 -2.4144 -1.1027 11 6 -0.4649 -3.5833 -1.3622 12 6 0.0018 -4.7817 -0.8224 13 7 -0.6667 -5.9720 -1.0969 14 6 -0.2181 -7.3159 -0.7015 15 6 -1.3174 -8.2459 -1.2502 16 8 -2.2555 -7.3390 -1.8986 17 6 -1.8207 -6.0804 -1.7694 18 8 -2.4174 -5.1232 -2.2211 19 6 1.1352 -4.7939 -0.0096 20 6 1.7953 -3.6323 0.2637 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1721 -1.4878 -1.5248 23 1 -1.3432 -3.5815 -1.9907 24 1 0.7447 -7.5476 -1.1570 25 1 -0.1585 -7.3956 0.3839 26 1 -1.8063 -8.7858 -0.4393 27 1 -0.8983 -8.9442 -1.9748 28 1 1.4910 -5.7258 0.4044 29 1 2.6729 -3.6434 0.8928 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093965582.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:17 Heat of formation + Delta-G solvation = -62.256906 kcal Electronic energy + Delta-G solvation = -15767.114714 eV Core-core repulsion = 13040.721046 eV Total energy + Delta-G solvation = -2726.393668 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.73840 -39.61770 -38.33749 -36.72041 -35.00233 -31.79981 -31.25106 -30.24475 -27.17730 -24.94569 -23.85630 -22.40229 -21.69224 -19.25276 -18.85394 -18.34219 -17.85310 -17.17039 -16.19456 -15.72771 -15.55874 -15.07677 -14.82248 -14.67303 -14.48893 -14.07166 -13.64279 -13.29418 -13.13239 -12.78191 -12.76283 -12.35649 -12.02845 -11.73945 -11.64103 -11.20989 -10.94444 -10.62653 -9.53813 -8.80063 -8.57978 -6.27826 0.74837 1.07337 1.39025 1.45010 1.48508 1.52139 1.79944 2.22073 2.62235 2.76472 3.35532 3.69418 3.78452 3.99616 4.39850 4.47400 4.48768 4.70113 4.75055 4.91475 5.10047 5.16375 5.29101 5.38701 5.68316 5.81679 6.00390 6.08192 6.29948 6.50915 6.66431 6.89715 6.93177 7.09327 8.36634 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.057271 B = 0.006152 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.789512 B = 4550.533187 C = 4963.841636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.028 3.972 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.494 4.494 8 H 0.085 0.915 9 C 0.069 3.931 10 C -0.165 4.165 11 C -0.141 4.141 12 C 0.038 3.962 13 N -0.551 5.551 14 C 0.053 3.947 15 C 0.041 3.959 16 O -0.342 6.342 17 C 0.625 3.375 18 O -0.570 6.570 19 C -0.099 4.099 20 C -0.209 4.209 21 H 0.286 0.714 22 H 0.097 0.903 23 H 0.110 0.890 24 H 0.118 0.882 25 H 0.116 0.884 26 H 0.139 0.861 27 H 0.140 0.860 28 H 0.144 0.856 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.899 -13.536 1.216 13.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.186 4.186 3 Si 0.807 3.193 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.179 1.179 7 C -0.524 4.524 8 H 0.103 0.897 9 C 0.067 3.933 10 C -0.185 4.185 11 C -0.161 4.161 12 C -0.053 4.053 13 N -0.288 5.288 14 C -0.068 4.068 15 C -0.033 4.033 16 O -0.252 6.252 17 C 0.380 3.620 18 O -0.459 6.459 19 C -0.119 4.119 20 C -0.229 4.229 21 H 0.096 0.904 22 H 0.115 0.885 23 H 0.128 0.872 24 H 0.136 0.864 25 H 0.135 0.865 26 H 0.157 0.843 27 H 0.158 0.842 28 H 0.161 0.839 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.170 -13.070 0.893 13.279 hybrid contribution -0.020 1.067 -0.062 1.069 sum 2.150 -12.003 0.831 12.222 Atomic orbital electron populations 1.69912 1.09182 1.30474 1.36632 1.26846 0.95497 1.04843 0.91382 0.85187 0.78561 0.75372 0.80186 1.18437 1.19799 1.17878 1.19804 0.97015 0.91686 1.43856 0.89726 1.18035 0.91985 0.93869 0.89444 1.20889 0.99758 0.96019 1.01821 1.20947 1.00743 0.92514 1.01896 1.17016 0.97991 0.82751 1.07523 1.45000 1.21720 1.07869 1.54184 1.23321 1.00696 0.78533 1.04295 1.24849 0.87280 0.90985 1.00148 1.87231 1.48724 1.16029 1.73224 1.18656 0.80993 0.83324 0.79025 1.90888 1.62557 1.37012 1.55458 1.20244 0.94279 0.98838 0.98560 1.20891 1.03801 0.92461 1.05765 0.90364 0.88489 0.87232 0.86412 0.86549 0.84286 0.84198 0.83881 0.86272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.84 10.94 21.82 0.24 -45.60 15 2 C 0.03 1.44 5.21 85.24 0.44 1.88 15 3 Si 0.99 38.81 29.58 68.60 2.03 40.84 15 4 H -0.26 -9.96 7.11 99.48 0.71 -9.26 15 5 H -0.27 -10.39 7.11 99.48 0.71 -9.69 15 6 H -0.25 -9.49 7.11 99.48 0.71 -8.78 15 7 C -0.49 -26.50 9.04 23.39 0.21 -26.29 15 8 H 0.08 4.24 7.88 -2.91 -0.02 4.22 15 9 C 0.07 3.76 5.55 -21.27 -0.12 3.64 15 10 C -0.16 -9.31 8.60 22.48 0.19 -9.12 15 11 C -0.14 -7.48 9.22 22.13 0.20 -7.27 15 12 C 0.04 1.70 6.63 38.56 0.26 1.96 15 13 N -0.55 -19.75 3.14 -759.34 -2.39 -22.14 15 14 C 0.05 1.02 6.47 86.64 0.56 1.58 15 15 C 0.04 0.60 8.23 72.35 0.60 1.20 15 16 O -0.34 -10.29 11.09 -47.36 -0.53 -10.82 15 17 C 0.62 24.99 8.76 129.91 1.14 26.12 15 18 O -0.57 -28.69 14.73 19.67 0.29 -28.40 15 19 C -0.10 -3.97 9.42 22.13 0.21 -3.76 15 20 C -0.21 -9.64 9.74 22.48 0.22 -9.42 15 21 H 0.29 14.37 8.30 -92.71 -0.77 13.60 15 22 H 0.10 5.84 6.27 -2.91 -0.02 5.82 15 23 H 0.11 6.15 5.25 -2.91 -0.02 6.13 15 24 H 0.12 1.74 8.14 -2.39 -0.02 1.72 15 25 H 0.12 1.74 8.10 -2.39 -0.02 1.72 15 26 H 0.14 1.13 8.14 -2.39 -0.02 1.11 15 27 H 0.14 1.10 8.14 -2.38 -0.02 1.08 15 28 H 0.14 4.21 7.26 -2.91 -0.02 4.19 15 29 H 0.12 4.91 8.06 -2.91 -0.02 4.89 15 Total: -1.00 -73.56 253.21 4.73 -68.83 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 1.17 Total: 16.76 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 3.91 Total: -19.47 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: -2.15 Total: -67.74 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -0.24 Total: -39.22 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -73.56 4.73 -68.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093965582.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.569 kcal (2) G-P(sol) polarization free energy of solvation -73.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds