Wall clock time and date at job start Mon Mar 30 2020 02:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86798 * 120.00338 * 2 1 4 4 H 1.48501 * 109.47058 * 89.99933 * 3 2 1 5 5 H 1.48496 * 109.47342 * 210.00656 * 3 2 1 6 6 H 1.48502 * 109.46994 * 330.00465 * 3 2 1 7 7 C 1.38658 * 119.99658 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00079 * 359.97438 * 7 2 1 9 9 O 1.34827 * 119.99787 * 179.97438 * 7 2 1 10 10 C 1.35763 * 116.99856 * 174.93579 * 9 7 2 11 11 C 1.38889 * 119.91327 * 5.61473 * 10 9 7 12 12 C 1.38197 * 120.07512 * 179.72869 * 11 10 9 13 13 C 1.37858 * 120.20989 * 0.54092 * 12 11 10 14 14 C 1.40160 * 120.24659 * 359.73544 * 13 12 11 15 15 C 1.38905 * 119.91075 * 185.88754 * 10 9 7 16 16 C 1.50979 * 130.44461 * 359.97421 * 15 10 9 17 17 C 1.53475 * 106.38180 * 180.02562 * 16 15 10 18 18 C 1.47750 * 129.96770 * 180.02562 * 14 13 12 19 19 N 1.29327 * 125.99287 * 359.97438 * 18 14 13 20 20 O 1.41600 * 120.00056 * 359.97088 * 19 18 14 21 21 H 0.97003 * 120.00201 * 359.97438 * 1 2 3 22 22 H 1.08001 * 119.96307 * 359.97438 * 11 10 9 23 23 H 1.07992 * 119.89488 * 180.25580 * 12 11 10 24 24 H 1.08002 * 119.87676 * 179.74591 * 13 12 11 25 25 H 1.09006 * 110.06794 * 299.25200 * 16 15 10 26 26 H 1.08998 * 110.07381 * 60.79426 * 16 15 10 27 27 H 1.08997 * 110.27862 * 118.96053 * 17 16 15 28 28 H 1.08998 * 110.27554 * 241.03919 * 17 16 15 29 29 H 0.96699 * 113.99945 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 1.4001 5 1 3.5471 1.4401 -0.7001 6 1 1.4470 2.6527 -0.7000 7 6 2.0087 -1.2009 -0.0005 8 1 1.4687 -2.1362 -0.0005 9 8 3.3570 -1.2009 -0.0011 10 6 3.9734 -2.4059 0.1052 11 6 3.2202 -3.5728 0.0904 12 6 3.8446 -4.8014 0.1927 13 6 5.2153 -4.8743 0.3210 14 6 5.9856 -3.7036 0.3431 15 6 5.3550 -2.4682 0.2342 16 6 6.3849 -1.3653 0.2822 17 6 7.7485 -2.0528 0.4350 18 6 7.4477 -3.5318 0.4691 19 7 8.3172 -4.4818 0.5877 20 8 7.8922 -5.8324 0.6058 21 1 -0.4850 0.8401 0.0004 22 1 2.1457 -3.5201 -0.0052 23 1 3.2566 -5.7070 0.1767 24 1 5.6973 -5.8372 0.4047 25 1 6.3584 -0.7882 -0.6422 26 1 6.1964 -0.7143 1.1358 27 1 8.3880 -1.8169 -0.4156 28 1 8.2257 -1.7429 1.3647 29 1 8.6130 -6.4703 0.6982 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108974527.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:10 Heat of formation + Delta-G solvation = 4.450435 kcal Electronic energy + Delta-G solvation = -15676.072465 eV Core-core repulsion = 12952.571444 eV Total energy + Delta-G solvation = -2723.501021 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.85078 -37.83888 -36.13724 -34.90198 -32.48207 -31.63880 -28.97452 -28.55640 -25.32918 -24.55329 -21.79106 -20.86913 -19.32130 -18.05393 -17.40316 -16.28196 -15.41162 -15.26258 -14.84856 -14.28350 -14.15168 -13.76558 -13.38376 -13.20040 -12.42880 -12.31379 -11.96637 -11.89442 -11.62774 -11.31629 -11.23454 -10.88248 -10.77816 -10.23955 -9.72140 -9.70582 -9.47208 -8.91412 -7.95276 -7.40853 -6.46179 -4.12955 1.22317 2.13286 2.79778 3.07693 3.19055 3.22610 3.36073 4.19319 4.39368 4.57220 4.75751 5.02512 5.10922 5.24784 5.34340 5.61845 5.71130 5.90256 5.94164 6.10079 6.21620 6.24164 6.34287 6.60632 6.81816 7.03968 7.15075 7.19418 7.47636 7.71404 7.84283 7.97252 8.88658 9.49219 10.61344 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.039011 B = 0.007380 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.565652 B = 3792.957044 C = 4486.823596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.258 1.258 6 H -0.282 1.282 7 C -0.391 4.391 8 H 0.106 0.894 9 O -0.214 6.214 10 C 0.163 3.837 11 C -0.199 4.199 12 C -0.087 4.087 13 C -0.149 4.149 14 C -0.087 4.087 15 C -0.134 4.134 16 C -0.068 4.068 17 C -0.062 4.062 18 C 0.187 3.813 19 N -0.344 5.344 20 O -0.406 6.406 21 H 0.280 0.720 22 H 0.139 0.861 23 H 0.116 0.884 24 H 0.119 0.881 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.366 -4.585 0.740 13.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.182 1.182 6 H -0.208 1.208 7 C -0.467 4.467 8 H 0.124 0.876 9 O -0.119 6.119 10 C 0.111 3.889 11 C -0.219 4.219 12 C -0.105 4.105 13 C -0.169 4.169 14 C -0.089 4.089 15 C -0.138 4.138 16 C -0.105 4.105 17 C -0.101 4.101 18 C -0.002 4.002 19 N -0.087 5.087 20 O -0.312 6.312 21 H 0.090 0.910 22 H 0.157 0.843 23 H 0.134 0.866 24 H 0.137 0.863 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 12.660 -4.187 0.751 13.355 hybrid contribution -0.368 0.052 -0.004 0.372 sum 12.292 -4.135 0.747 12.990 Atomic orbital electron populations 1.69643 1.05608 1.28576 1.47746 1.24463 0.95013 0.98852 0.95591 0.86190 0.80409 0.81386 0.79008 1.19827 1.18190 1.20790 1.20770 0.76862 0.96661 1.52366 0.87626 1.83580 1.22563 1.25313 1.80416 1.18487 0.89787 0.85945 0.94697 1.21365 1.01279 0.91577 1.07634 1.20717 0.93918 0.97011 0.98897 1.20762 0.93305 0.96777 1.06067 1.19513 0.91791 0.93668 1.03963 1.19523 0.91260 0.94985 1.07987 1.20603 0.90090 0.96388 1.03420 1.20846 0.98805 0.86506 1.03894 1.23952 0.90149 0.95026 0.91040 1.76314 1.25491 0.88685 1.18219 1.88518 1.36128 1.11434 1.95100 0.90984 0.84327 0.86560 0.86265 0.89838 0.89821 0.88632 0.88618 0.75986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.90 13.96 55.48 0.77 -24.12 15 2 C 0.06 1.76 5.49 -17.52 -0.10 1.67 15 3 Si 0.90 20.99 28.62 -169.99 -4.86 16.13 15 4 H -0.27 -6.22 7.11 56.52 0.40 -5.81 15 5 H -0.26 -5.92 7.11 56.52 0.40 -5.52 15 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 7 C -0.39 -10.73 9.94 30.89 0.31 -10.42 15 8 H 0.11 2.96 5.42 -52.49 -0.28 2.68 15 9 O -0.21 -5.43 8.53 0.02 0.00 -5.43 15 10 C 0.16 3.70 6.65 -39.09 -0.26 3.44 15 11 C -0.20 -4.25 9.16 -39.36 -0.36 -4.61 15 12 C -0.09 -1.63 10.02 -39.74 -0.40 -2.03 15 13 C -0.15 -2.77 9.57 -39.00 -0.37 -3.14 15 14 C -0.09 -1.64 6.05 -104.95 -0.63 -2.27 15 15 C -0.13 -2.65 6.18 -103.91 -0.64 -3.29 15 16 C -0.07 -1.07 6.73 -27.50 -0.19 -1.25 15 17 C -0.06 -0.81 6.87 -27.51 -0.19 -1.00 15 18 C 0.19 3.06 7.49 -79.63 -0.60 2.46 15 19 N -0.34 -5.44 12.20 35.18 0.43 -5.01 15 20 O -0.41 -5.85 12.53 -11.47 -0.14 -5.99 15 21 H 0.28 7.33 8.31 -40.82 -0.34 6.99 15 22 H 0.14 3.06 5.62 -52.49 -0.29 2.76 15 23 H 0.12 1.82 8.06 -52.49 -0.42 1.40 15 24 H 0.12 2.08 6.30 -52.49 -0.33 1.75 15 25 H 0.08 1.26 8.14 -51.93 -0.42 0.83 15 26 H 0.08 1.26 8.14 -51.93 -0.42 0.83 15 27 H 0.10 1.04 8.14 -51.93 -0.42 0.62 15 28 H 0.10 1.05 8.14 -51.93 -0.42 0.62 15 29 H 0.39 3.50 9.28 45.56 0.42 3.93 15 LS Contribution 256.86 15.07 3.87 3.87 Total: -1.00 -30.78 256.86 -5.10 -35.88 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -1.74 Total: 5.14 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -3.43 Total: -20.46 kcal Atomic # 7 Polarization: -30.34 SS G_CDS: 1.20 Total: -29.13 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -0.14 Total: -11.42 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.86 Total: 16.13 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.78 -5.10 -35.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108974527.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.328 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds