Wall clock time and date at job start Mon Mar 30 2020 02:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86798 * 120.00338 * 2 1 4 4 H 1.48501 * 109.47058 * 89.99933 * 3 2 1 5 5 H 1.48496 * 109.47342 * 210.00656 * 3 2 1 6 6 H 1.48502 * 109.46994 * 330.00465 * 3 2 1 7 7 C 1.38658 * 119.99658 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00079 * 359.97438 * 7 2 1 9 9 O 1.34827 * 119.99787 * 179.97438 * 7 2 1 10 10 C 1.35763 * 116.99856 * 174.93579 * 9 7 2 11 11 C 1.38889 * 119.91327 * 5.61473 * 10 9 7 12 12 C 1.38197 * 120.07512 * 179.72869 * 11 10 9 13 13 C 1.37858 * 120.20989 * 0.54092 * 12 11 10 14 14 C 1.40160 * 120.24659 * 359.73544 * 13 12 11 15 15 C 1.38905 * 119.91075 * 185.88754 * 10 9 7 16 16 C 1.50979 * 130.44461 * 359.97421 * 15 10 9 17 17 C 1.53475 * 106.38180 * 180.02562 * 16 15 10 18 18 C 1.47750 * 129.96770 * 180.02562 * 14 13 12 19 19 N 1.29327 * 125.99287 * 359.97438 * 18 14 13 20 20 O 1.41600 * 120.00056 * 359.97088 * 19 18 14 21 21 H 0.97003 * 120.00201 * 359.97438 * 1 2 3 22 22 H 1.08001 * 119.96307 * 359.97438 * 11 10 9 23 23 H 1.07992 * 119.89488 * 180.25580 * 12 11 10 24 24 H 1.08002 * 119.87676 * 179.74591 * 13 12 11 25 25 H 1.09006 * 110.06794 * 299.25200 * 16 15 10 26 26 H 1.08998 * 110.07381 * 60.79426 * 16 15 10 27 27 H 1.08997 * 110.27862 * 118.96053 * 17 16 15 28 28 H 1.08998 * 110.27554 * 241.03919 * 17 16 15 29 29 H 0.96699 * 113.99945 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 1.4001 5 1 3.5471 1.4401 -0.7001 6 1 1.4470 2.6527 -0.7000 7 6 2.0087 -1.2009 -0.0005 8 1 1.4687 -2.1362 -0.0005 9 8 3.3570 -1.2009 -0.0011 10 6 3.9734 -2.4059 0.1052 11 6 3.2202 -3.5728 0.0904 12 6 3.8446 -4.8014 0.1927 13 6 5.2153 -4.8743 0.3210 14 6 5.9856 -3.7036 0.3431 15 6 5.3550 -2.4682 0.2342 16 6 6.3849 -1.3653 0.2822 17 6 7.7485 -2.0528 0.4350 18 6 7.4477 -3.5318 0.4691 19 7 8.3172 -4.4818 0.5877 20 8 7.8922 -5.8324 0.6058 21 1 -0.4850 0.8401 0.0004 22 1 2.1457 -3.5201 -0.0052 23 1 3.2566 -5.7070 0.1767 24 1 5.6973 -5.8372 0.4047 25 1 6.3584 -0.7882 -0.6422 26 1 6.1964 -0.7143 1.1358 27 1 8.3880 -1.8169 -0.4156 28 1 8.2257 -1.7429 1.3647 29 1 8.6130 -6.4703 0.6982 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108974527.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:09 Heat of formation + Delta-G solvation = -16.588792 kcal Electronic energy + Delta-G solvation = -15676.984794 eV Core-core repulsion = 12952.571444 eV Total energy + Delta-G solvation = -2724.413350 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.39326 -39.42909 -37.44571 -36.26982 -34.47290 -32.94826 -30.51874 -30.00486 -27.23475 -25.87543 -23.32851 -22.38901 -20.73403 -19.75624 -19.01531 -17.71187 -16.97039 -16.48660 -16.44736 -15.95120 -15.65317 -15.45405 -14.94427 -14.36362 -14.30065 -14.03389 -13.26562 -13.21017 -13.15920 -12.78338 -12.60222 -12.48596 -12.32291 -11.94202 -11.42135 -11.01802 -10.97627 -10.85127 -9.38362 -9.11167 -8.49083 -6.22101 -0.21333 0.55139 1.34904 1.35125 1.44284 1.55614 1.99313 2.30145 2.75267 2.97368 3.09662 3.31578 3.78305 4.03830 4.19530 4.30153 4.33399 4.47262 4.61623 4.73969 4.86164 4.98267 5.12758 5.21768 5.36764 5.40245 5.59652 5.67703 5.81636 5.97389 6.13011 6.80242 6.84716 7.55365 8.62205 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.039011 B = 0.007380 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.565652 B = 3792.957044 C = 4486.823596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.254 1.254 6 H -0.271 1.271 7 C -0.402 4.402 8 H 0.081 0.919 9 O -0.233 6.233 10 C 0.128 3.872 11 C -0.215 4.215 12 C -0.086 4.086 13 C -0.142 4.142 14 C -0.095 4.095 15 C -0.138 4.138 16 C -0.071 4.071 17 C -0.051 4.051 18 C 0.174 3.826 19 N -0.337 5.337 20 O -0.414 6.414 21 H 0.285 0.715 22 H 0.120 0.880 23 H 0.146 0.854 24 H 0.137 0.863 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.543 -4.724 0.983 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.178 1.178 6 H -0.196 1.196 7 C -0.478 4.478 8 H 0.098 0.902 9 O -0.140 6.140 10 C 0.079 3.921 11 C -0.235 4.235 12 C -0.104 4.104 13 C -0.162 4.162 14 C -0.097 4.097 15 C -0.141 4.141 16 C -0.109 4.109 17 C -0.089 4.089 18 C -0.014 4.014 19 N -0.078 5.078 20 O -0.326 6.326 21 H 0.094 0.906 22 H 0.138 0.862 23 H 0.164 0.836 24 H 0.155 0.845 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 15.883 -4.374 0.997 16.505 hybrid contribution -1.179 -0.263 -0.054 1.209 sum 14.704 -4.638 0.943 15.447 Atomic orbital electron populations 1.69731 1.07072 1.29685 1.49884 1.25297 0.95842 1.02283 0.95321 0.85227 0.79155 0.77088 0.79417 1.18962 1.17776 1.19602 1.20714 0.78115 0.96151 1.52797 0.90186 1.83525 1.21064 1.26620 1.82793 1.19009 0.91296 0.85559 0.96241 1.21423 1.00620 0.92835 1.08653 1.20996 0.94516 0.96936 0.97971 1.21116 0.93198 0.97758 1.04107 1.19993 0.93681 0.93201 1.02815 1.19998 0.90612 0.97314 1.06199 1.20772 0.90356 0.95605 1.04130 1.20942 0.97475 0.83888 1.06561 1.24301 0.88470 0.96721 0.91956 1.76266 1.25290 0.89252 1.17029 1.88478 1.38032 1.11217 1.94834 0.90559 0.86243 0.83619 0.84485 0.89117 0.89096 0.85829 0.85846 0.73275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.36 13.96 21.61 0.30 -54.06 15 2 C 0.01 0.63 5.49 84.83 0.47 1.10 15 3 Si 0.97 43.73 28.62 68.60 1.96 45.69 15 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 15 5 H -0.25 -11.14 7.11 99.48 0.71 -10.44 15 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 7 C -0.40 -23.11 9.94 67.92 0.68 -22.43 15 8 H 0.08 4.85 5.42 -2.91 -0.02 4.83 15 9 O -0.23 -12.18 8.53 -22.85 -0.19 -12.38 15 10 C 0.13 5.94 6.65 22.59 0.15 6.09 15 11 C -0.22 -9.53 9.16 22.42 0.21 -9.32 15 12 C -0.09 -3.16 10.02 22.17 0.22 -2.94 15 13 C -0.14 -4.99 9.57 22.65 0.22 -4.77 15 14 C -0.09 -3.35 6.05 -20.08 -0.12 -3.48 15 15 C -0.14 -5.31 6.18 -19.40 -0.12 -5.43 15 16 C -0.07 -2.06 6.73 30.10 0.20 -1.86 15 17 C -0.05 -1.11 6.87 30.09 0.21 -0.91 15 18 C 0.17 5.09 7.49 45.53 0.34 5.43 15 19 N -0.34 -9.34 12.20 -42.61 -0.52 -9.86 15 20 O -0.41 -10.38 12.53 -38.78 -0.49 -10.87 15 21 H 0.28 15.38 8.31 -92.71 -0.77 14.61 15 22 H 0.12 5.68 5.62 -2.91 -0.02 5.66 15 23 H 0.15 4.35 8.06 -2.91 -0.02 4.33 15 24 H 0.14 4.34 6.30 -2.91 -0.02 4.33 15 25 H 0.09 2.50 8.14 -2.38 -0.02 2.48 15 26 H 0.09 2.51 8.14 -2.39 -0.02 2.49 15 27 H 0.12 2.07 8.14 -2.39 -0.02 2.05 15 28 H 0.12 2.08 8.14 -2.39 -0.02 2.06 15 29 H 0.42 5.82 9.28 -74.06 -0.69 5.13 15 Total: -1.00 -68.09 256.86 4.02 -64.07 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.51 Total: 15.91 kcal Atomic # 6 Polarization: -40.96 SS G_CDS: 2.44 Total: -38.51 kcal Atomic # 7 Polarization: -63.70 SS G_CDS: -0.22 Total: -63.92 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.68 Total: -23.24 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.96 Total: 45.69 kcal Total: -68.09 4.02 -64.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108974527.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.484 kcal (2) G-P(sol) polarization free energy of solvation -68.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds