Wall clock time and date at job start Mon Mar 30 2020 03:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31425 * 1 3 3 Si 1.86797 * 120.00054 * 2 1 4 4 H 1.48498 * 109.47532 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47144 * 300.00354 * 3 2 1 6 6 H 1.48501 * 109.46983 * 60.00244 * 3 2 1 7 7 C 1.38877 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00294 * 191.36648 * 7 2 1 9 9 N 1.37103 * 119.99842 * 11.36677 * 7 2 1 10 10 C 1.39878 * 120.33851 * 28.06724 * 9 7 2 11 11 C 1.38659 * 120.65768 * 48.75707 * 10 9 7 12 12 C 1.38202 * 119.83055 * 180.16264 * 11 10 9 13 13 C 1.38337 * 120.18727 * 0.02942 * 12 11 10 14 14 C 1.38269 * 120.29094 * 359.93792 * 13 12 11 15 15 C 1.38482 * 119.92858 * 359.93221 * 14 13 12 16 16 O 1.35864 * 120.48972 * 180.60708 * 15 14 13 17 17 C 1.42540 * 117.16977 * 104.41938 * 16 15 14 18 18 C 1.52738 * 110.41755 * 43.72449 * 17 16 15 19 19 C 1.35176 * 120.33777 * 208.08973 * 9 7 2 20 20 O 1.21289 * 120.15236 * 3.56228 * 19 9 7 21 21 H 0.97000 * 120.00638 * 359.97438 * 1 2 3 22 22 H 1.08001 * 120.08388 * 0.18581 * 11 10 9 23 23 H 1.08004 * 119.90924 * 180.02562 * 12 11 10 24 24 H 1.08006 * 119.85763 * 179.91601 * 13 12 11 25 25 H 1.08006 * 120.03774 * 179.97438 * 14 13 12 26 26 H 1.08991 * 109.31175 * 283.43047 * 17 16 15 27 27 H 1.08999 * 109.30688 * 164.01041 * 17 16 15 28 28 H 1.08997 * 109.36749 * 164.10757 * 18 17 16 29 29 H 1.09000 * 109.36887 * 283.73165 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0087 -1.2027 -0.0005 8 1 3.0728 -1.2119 0.1838 9 7 1.3434 -2.3783 -0.2351 10 6 0.1840 -2.3900 -1.0175 11 6 0.1555 -1.7533 -2.2489 12 6 -1.0002 -1.7727 -3.0064 13 6 -2.1273 -2.4246 -2.5391 14 6 -2.1059 -3.0622 -1.3124 15 6 -0.9515 -3.0503 -0.5476 16 8 -0.9139 -3.6835 0.6539 17 6 -0.2179 -4.9260 0.7133 18 6 1.1051 -4.8324 -0.0443 19 6 1.8009 -3.5378 0.2878 20 8 2.7669 -3.5361 1.0213 21 1 -0.4851 0.8400 0.0004 22 1 1.0345 -1.2437 -2.6153 23 1 -1.0236 -1.2775 -3.9660 24 1 -3.0281 -2.4353 -3.1349 25 1 -2.9883 -3.5696 -0.9513 26 1 -0.8344 -5.7062 0.2671 27 1 -0.0197 -5.1786 1.7549 28 1 1.7437 -5.6691 0.2389 29 1 0.9116 -4.8743 -1.1161 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133627614.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:08 Heat of formation + Delta-G solvation = -31.213086 kcal Electronic energy + Delta-G solvation = -16849.129918 eV Core-core repulsion = 14124.082410 eV Total energy + Delta-G solvation = -2725.047507 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.28570 -37.60706 -36.81616 -34.68721 -31.96079 -31.04702 -29.44500 -28.40365 -25.32436 -23.74995 -21.84486 -21.04862 -19.51196 -17.82393 -16.54303 -16.23152 -15.64199 -15.38102 -14.93251 -14.09943 -13.90091 -13.58831 -13.27194 -12.97548 -12.57072 -12.21883 -11.58587 -11.47646 -11.30760 -11.09900 -10.92764 -10.54101 -10.46378 -10.38663 -9.57611 -9.26660 -8.84310 -8.48082 -7.84947 -7.19886 -6.26291 -4.04755 2.03475 2.20433 3.11480 3.22274 3.28106 3.63771 4.03724 4.24766 4.60447 4.67074 5.06761 5.30753 5.38727 5.48590 5.64773 5.77251 5.81882 6.02254 6.08507 6.15723 6.37677 6.46354 6.74708 7.04905 7.22575 7.31857 7.47328 7.54616 8.01611 8.22926 8.40098 9.00159 9.24333 9.72911 10.65937 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.022895 B = 0.014249 C = 0.010115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.675802 B = 1964.581787 C = 2767.517017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.041 3.959 3 Si 0.925 3.075 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.330 4.330 8 H 0.101 0.899 9 N -0.395 5.395 10 C 0.201 3.799 11 C -0.103 4.103 12 C -0.111 4.111 13 C -0.149 4.149 14 C -0.120 4.120 15 C 0.069 3.931 16 O -0.323 6.323 17 C 0.077 3.923 18 C -0.177 4.177 19 C 0.469 3.531 20 O -0.563 6.563 21 H 0.271 0.729 22 H 0.118 0.882 23 H 0.111 0.889 24 H 0.112 0.888 25 H 0.116 0.884 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.254 -5.432 -5.541 8.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.166 4.166 3 Si 0.750 3.250 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.457 4.457 8 H 0.119 0.881 9 N -0.107 5.107 10 C 0.105 3.895 11 C -0.123 4.123 12 C -0.130 4.130 13 C -0.168 4.168 14 C -0.139 4.139 15 C 0.024 3.976 16 O -0.240 6.240 17 C 0.001 3.999 18 C -0.218 4.218 19 C 0.259 3.741 20 O -0.445 6.445 21 H 0.082 0.918 22 H 0.136 0.864 23 H 0.129 0.871 24 H 0.130 0.870 25 H 0.134 0.866 26 H 0.074 0.926 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.928 -5.210 -4.938 8.183 hybrid contribution 0.295 0.948 -0.088 0.996 sum -3.633 -4.263 -5.026 7.525 Atomic orbital electron populations 1.69899 1.05744 1.27741 1.44834 1.25398 0.95492 0.99904 0.95848 0.85893 0.79888 0.81197 0.77971 1.19099 1.20410 1.20499 1.19587 0.93790 0.81878 1.50410 0.88101 1.41361 1.21920 1.07093 1.40350 1.17948 0.86869 0.95095 0.89570 1.20691 0.98384 1.00367 0.92895 1.20795 0.93053 0.99765 0.99403 1.20608 0.98141 1.01741 0.96349 1.20801 0.97195 1.01916 0.94001 1.18498 0.92739 1.00151 0.86227 1.86011 1.74580 1.34614 1.28752 1.22686 0.90077 0.85701 1.01413 1.22354 0.98750 0.98371 1.02284 1.20214 0.86722 0.85110 0.82050 1.90537 1.29297 1.86994 1.37638 0.91783 0.86374 0.87053 0.87003 0.86564 0.92623 0.88624 0.88196 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.20 11.04 55.49 0.61 -22.59 15 2 C 0.04 1.09 4.84 -17.49 -0.08 1.01 15 3 Si 0.92 20.72 29.57 -169.99 -5.03 15.70 15 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 7 C -0.33 -9.28 8.81 -14.96 -0.13 -9.41 15 8 H 0.10 2.92 7.58 -52.49 -0.40 2.52 15 9 N -0.40 -10.48 2.73 -58.81 -0.16 -10.64 15 10 C 0.20 4.81 3.07 -83.56 -0.26 4.56 15 11 C -0.10 -2.24 8.22 -39.44 -0.32 -2.57 15 12 C -0.11 -2.05 10.04 -39.56 -0.40 -2.44 15 13 C -0.15 -2.59 10.04 -39.53 -0.40 -2.98 15 14 C -0.12 -2.27 9.99 -39.48 -0.39 -2.67 15 15 C 0.07 1.53 5.44 -39.02 -0.21 1.32 15 16 O -0.32 -7.18 9.91 -19.31 -0.19 -7.37 15 17 C 0.08 1.35 6.94 37.02 0.26 1.61 15 18 C -0.18 -3.35 5.45 -28.03 -0.15 -3.50 15 19 C 0.47 11.85 6.78 -10.82 -0.07 11.78 15 20 O -0.56 -15.93 16.93 5.55 0.09 -15.84 15 21 H 0.27 7.06 8.31 -40.82 -0.34 6.72 15 22 H 0.12 2.61 7.94 -52.49 -0.42 2.19 15 23 H 0.11 1.70 8.06 -52.48 -0.42 1.28 15 24 H 0.11 1.56 8.06 -52.48 -0.42 1.14 15 25 H 0.12 1.90 8.06 -52.48 -0.42 1.48 15 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 27 H 0.10 1.56 8.14 -51.93 -0.42 1.14 15 28 H 0.10 1.63 8.13 -51.93 -0.42 1.21 15 29 H 0.08 1.42 7.51 -51.93 -0.39 1.03 15 LS Contribution 251.03 15.07 3.78 3.78 Total: -1.00 -32.33 251.03 -5.93 -38.26 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -2.88 Total: 2.00 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -2.17 Total: -3.29 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.45 Total: -33.23 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.10 Total: -23.21 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -32.33 -5.93 -38.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133627614.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.043 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds