Wall clock time and date at job start Mon Mar 30 2020 03:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31425 * 1 3 3 Si 1.86797 * 120.00054 * 2 1 4 4 H 1.48498 * 109.47532 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47144 * 300.00354 * 3 2 1 6 6 H 1.48501 * 109.46983 * 60.00244 * 3 2 1 7 7 C 1.38877 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00294 * 191.36648 * 7 2 1 9 9 N 1.37103 * 119.99842 * 11.36677 * 7 2 1 10 10 C 1.39878 * 120.33851 * 28.06724 * 9 7 2 11 11 C 1.38659 * 120.65768 * 48.75707 * 10 9 7 12 12 C 1.38202 * 119.83055 * 180.16264 * 11 10 9 13 13 C 1.38337 * 120.18727 * 0.02942 * 12 11 10 14 14 C 1.38269 * 120.29094 * 359.93792 * 13 12 11 15 15 C 1.38482 * 119.92858 * 359.93221 * 14 13 12 16 16 O 1.35864 * 120.48972 * 180.60708 * 15 14 13 17 17 C 1.42540 * 117.16977 * 104.41938 * 16 15 14 18 18 C 1.52738 * 110.41755 * 43.72449 * 17 16 15 19 19 C 1.35176 * 120.33777 * 208.08973 * 9 7 2 20 20 O 1.21289 * 120.15236 * 3.56228 * 19 9 7 21 21 H 0.97000 * 120.00638 * 359.97438 * 1 2 3 22 22 H 1.08001 * 120.08388 * 0.18581 * 11 10 9 23 23 H 1.08004 * 119.90924 * 180.02562 * 12 11 10 24 24 H 1.08006 * 119.85763 * 179.91601 * 13 12 11 25 25 H 1.08006 * 120.03774 * 179.97438 * 14 13 12 26 26 H 1.08991 * 109.31175 * 283.43047 * 17 16 15 27 27 H 1.08999 * 109.30688 * 164.01041 * 17 16 15 28 28 H 1.08997 * 109.36749 * 164.10757 * 18 17 16 29 29 H 1.09000 * 109.36887 * 283.73165 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0087 -1.2027 -0.0005 8 1 3.0728 -1.2119 0.1838 9 7 1.3434 -2.3783 -0.2351 10 6 0.1840 -2.3900 -1.0175 11 6 0.1555 -1.7533 -2.2489 12 6 -1.0002 -1.7727 -3.0064 13 6 -2.1273 -2.4246 -2.5391 14 6 -2.1059 -3.0622 -1.3124 15 6 -0.9515 -3.0503 -0.5476 16 8 -0.9139 -3.6835 0.6539 17 6 -0.2179 -4.9260 0.7133 18 6 1.1051 -4.8324 -0.0443 19 6 1.8009 -3.5378 0.2878 20 8 2.7669 -3.5361 1.0213 21 1 -0.4851 0.8400 0.0004 22 1 1.0345 -1.2437 -2.6153 23 1 -1.0236 -1.2775 -3.9660 24 1 -3.0281 -2.4353 -3.1349 25 1 -2.9883 -3.5696 -0.9513 26 1 -0.8344 -5.7062 0.2671 27 1 -0.0197 -5.1786 1.7549 28 1 1.7437 -5.6691 0.2389 29 1 0.9116 -4.8743 -1.1161 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133627614.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:08 Heat of formation + Delta-G solvation = -52.769248 kcal Electronic energy + Delta-G solvation = -16850.064663 eV Core-core repulsion = 14124.082410 eV Total energy + Delta-G solvation = -2725.982252 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.96424 -39.40116 -38.39329 -36.53952 -33.92630 -32.62431 -30.99920 -30.06661 -27.20421 -25.38395 -23.46062 -22.59309 -21.30812 -19.66750 -18.17033 -17.91141 -17.26362 -17.10329 -16.74091 -15.84154 -15.55000 -15.14624 -14.99355 -14.66548 -14.28773 -13.79662 -13.40090 -13.10424 -12.92359 -12.80759 -12.52985 -12.34020 -12.16327 -11.95998 -11.36935 -11.07888 -10.59802 -10.34391 -9.40154 -9.00706 -8.20571 -6.14711 0.49457 0.64573 1.30884 1.36051 1.49996 1.83256 2.20783 2.68778 2.86166 3.01567 3.17324 3.75523 3.93959 4.03700 4.24460 4.35021 4.49906 4.60138 4.69182 4.75632 4.84426 4.93245 5.20223 5.35492 5.56537 5.67473 5.76367 6.03239 6.10005 6.37468 6.73555 6.99919 7.31245 7.79824 8.63170 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.022895 B = 0.014249 C = 0.010115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.675802 B = 1964.581787 C = 2767.517017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.010 3.990 3 Si 0.987 3.013 4 H -0.272 1.272 5 H -0.260 1.260 6 H -0.276 1.276 7 C -0.366 4.366 8 H 0.073 0.927 9 N -0.410 5.410 10 C 0.166 3.834 11 C -0.121 4.121 12 C -0.109 4.109 13 C -0.129 4.129 14 C -0.120 4.120 15 C 0.054 3.946 16 O -0.353 6.353 17 C 0.073 3.927 18 C -0.164 4.164 19 C 0.446 3.554 20 O -0.616 6.616 21 H 0.274 0.726 22 H 0.100 0.900 23 H 0.146 0.854 24 H 0.159 0.841 25 H 0.147 0.853 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.124 0.876 29 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.747 -5.711 -7.113 11.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.195 4.195 3 Si 0.810 3.190 4 H -0.196 1.196 5 H -0.184 1.184 6 H -0.202 1.202 7 C -0.493 4.493 8 H 0.091 0.909 9 N -0.122 5.122 10 C 0.072 3.928 11 C -0.141 4.141 12 C -0.127 4.127 13 C -0.147 4.147 14 C -0.139 4.139 15 C 0.009 3.991 16 O -0.270 6.270 17 C -0.001 4.001 18 C -0.204 4.204 19 C 0.238 3.762 20 O -0.503 6.503 21 H 0.084 0.916 22 H 0.118 0.882 23 H 0.163 0.837 24 H 0.177 0.823 25 H 0.165 0.835 26 H 0.121 0.879 27 H 0.122 0.878 28 H 0.142 0.858 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.468 -5.503 -6.549 10.724 hybrid contribution 0.982 0.997 0.350 1.442 sum -5.486 -4.506 -6.199 9.425 Atomic orbital electron populations 1.70018 1.06687 1.28509 1.44724 1.26115 0.96330 1.02339 0.94758 0.84982 0.78300 0.77147 0.78576 1.19603 1.18433 1.20168 1.19538 0.93128 0.83851 1.52767 0.90919 1.41566 1.22675 1.06922 1.41014 1.18253 0.86613 0.97506 0.90448 1.20776 0.99399 1.00728 0.93206 1.21190 0.91982 0.99346 1.00213 1.21154 0.99069 0.98786 0.95717 1.21205 0.96813 1.01757 0.94137 1.18809 0.93261 1.00429 0.86587 1.85929 1.75124 1.36488 1.29462 1.22969 0.89575 0.85286 1.02311 1.22327 0.99373 0.95365 1.03326 1.21345 0.86460 0.86970 0.81459 1.90477 1.31578 1.88019 1.40177 0.91582 0.88199 0.83658 0.82300 0.83538 0.87852 0.87849 0.85752 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.75 11.04 21.65 0.24 -47.51 15 2 C 0.01 0.56 4.84 84.91 0.41 0.97 15 3 Si 0.99 43.35 29.57 68.60 2.03 45.37 15 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 15 5 H -0.26 -10.56 7.11 99.48 0.71 -9.85 15 6 H -0.28 -11.92 7.11 99.48 0.71 -11.22 15 7 C -0.37 -21.67 8.81 84.02 0.74 -20.93 15 8 H 0.07 4.55 7.58 -2.91 -0.02 4.53 15 9 N -0.41 -22.61 2.73 -458.13 -1.25 -23.86 15 10 C 0.17 7.98 3.07 38.26 0.12 8.10 15 11 C -0.12 -5.23 8.22 22.36 0.18 -5.04 15 12 C -0.11 -3.66 10.04 22.28 0.22 -3.43 15 13 C -0.13 -3.85 10.04 22.30 0.22 -3.62 15 14 C -0.12 -4.11 9.99 22.34 0.22 -3.88 15 15 C 0.05 2.32 5.44 22.63 0.12 2.44 15 16 O -0.35 -15.31 9.91 -92.02 -0.91 -16.22 15 17 C 0.07 2.44 6.94 71.89 0.50 2.94 15 18 C -0.16 -6.10 5.45 29.75 0.16 -5.94 15 19 C 0.45 23.43 6.78 87.59 0.59 24.02 15 20 O -0.62 -36.94 16.93 -3.06 -0.05 -36.99 15 21 H 0.27 14.19 8.31 -92.71 -0.77 13.42 15 22 H 0.10 4.55 7.94 -2.91 -0.02 4.53 15 23 H 0.15 3.83 8.06 -2.91 -0.02 3.81 15 24 H 0.16 3.31 8.06 -2.91 -0.02 3.29 15 25 H 0.15 4.06 8.06 -2.91 -0.02 4.04 15 26 H 0.10 2.49 8.14 -2.39 -0.02 2.47 15 27 H 0.10 3.23 8.14 -2.39 -0.02 3.21 15 28 H 0.12 3.92 8.13 -2.39 -0.02 3.90 15 29 H 0.09 3.21 7.51 -2.39 -0.02 3.19 15 Total: -1.00 -74.27 251.03 4.71 -69.56 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 1.16 Total: 14.03 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 3.50 Total: -4.38 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -1.01 Total: -71.37 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -0.96 Total: -53.21 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -74.27 4.71 -69.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133627614.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.787 kcal (2) G-P(sol) polarization free energy of solvation -74.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds