Wall clock time and date at job start Mon Mar 30 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86797 * 119.99787 * 2 1 4 4 H 1.48497 * 109.47638 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47090 * 300.00312 * 3 2 1 6 6 H 1.48504 * 109.47188 * 59.99714 * 3 2 1 7 7 C 1.38650 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99993 * 180.02562 * 7 2 1 9 9 O 1.34829 * 120.00494 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00493 * 185.05789 * 9 7 2 11 11 C 1.38947 * 120.03037 * 174.49001 * 10 9 7 12 12 C 1.38135 * 120.07674 * 179.97438 * 11 10 9 13 13 C 1.38168 * 120.12096 * 0.03490 * 12 11 10 14 14 C 1.38946 * 120.08359 * 359.94385 * 13 12 11 15 15 C 1.38731 * 119.92961 * 0.05334 * 14 13 12 16 16 N 1.39836 * 119.92636 * 180.02562 * 14 13 12 17 17 C 1.34554 * 120.45851 * 18.81380 * 16 14 13 18 18 O 1.21286 * 119.61414 * 180.48569 * 17 16 14 19 19 C 1.50494 * 120.77358 * 0.25201 * 17 16 14 20 20 C 1.50686 * 120.11341 * 179.97438 * 13 12 11 21 21 H 0.96995 * 120.00200 * 359.97438 * 1 2 3 22 22 H 1.08003 * 119.95769 * 359.97438 * 11 10 9 23 23 H 1.08003 * 119.93985 * 179.97438 * 12 11 10 24 24 H 1.08008 * 120.07456 * 179.97438 * 15 14 13 25 25 H 0.96995 * 119.76872 * 198.53150 * 16 14 13 26 26 H 1.08998 * 109.49072 * 204.99256 * 19 17 16 27 27 H 1.08999 * 109.18910 * 85.33107 * 19 17 16 28 28 H 1.09002 * 109.46090 * 266.02329 * 20 13 12 29 29 H 1.09002 * 109.46068 * 25.99579 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3466 -0.0006 5 1 1.8906 2.3965 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3349 -2.3685 0.0016 10 6 2.0702 -3.5045 0.1087 11 6 1.4357 -4.7345 0.2315 12 6 2.1830 -5.8912 0.3400 13 6 3.5633 -5.8286 0.3275 14 6 4.2038 -4.6018 0.2045 15 6 3.4560 -3.4384 0.0953 16 7 5.6008 -4.5423 0.1917 17 6 6.3278 -5.6414 -0.0805 18 8 7.5388 -5.5745 -0.0788 19 6 5.6559 -6.9539 -0.3818 20 6 4.3783 -7.0904 0.4465 21 1 -0.4850 0.8400 0.0004 22 1 0.3570 -4.7862 0.2421 23 1 1.6876 -6.8460 0.4358 24 1 3.9514 -2.4834 0.0000 25 1 6.0488 -3.7021 0.3763 26 1 6.3333 -7.7730 -0.1405 27 1 5.4056 -6.9931 -1.4420 28 1 4.6394 -7.2569 1.4916 29 1 3.7957 -7.9351 0.0788 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159059939.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:26 Heat of formation + Delta-G solvation = -48.533940 kcal Electronic energy + Delta-G solvation = -15627.041405 eV Core-core repulsion = 12901.242809 eV Total energy + Delta-G solvation = -2725.798596 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.55141 -38.79889 -37.09089 -34.40916 -33.41441 -32.25945 -29.22107 -28.48781 -25.54194 -23.91448 -22.38015 -21.99559 -19.07390 -17.88220 -17.84836 -16.68544 -15.87757 -15.59980 -14.80379 -14.45688 -14.30945 -13.81417 -13.77861 -13.23960 -13.01698 -12.62178 -12.33863 -12.09437 -11.74935 -11.30436 -11.09193 -10.90624 -10.68432 -10.49736 -10.02976 -9.82180 -9.57943 -8.89722 -7.81737 -7.23293 -6.56043 -4.15545 1.77726 2.09391 2.83996 3.06879 3.08341 3.13552 3.33508 3.87821 4.38381 4.59852 4.93834 4.98305 5.06912 5.14555 5.30598 5.52206 5.67236 5.82603 5.97841 5.99641 6.10361 6.28986 6.52251 6.67884 6.95235 6.96137 7.10928 7.27672 7.42157 7.68581 7.88021 8.20046 8.89300 9.56223 10.61338 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.034087 B = 0.006836 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.241495 B = 4095.003657 C = 4872.811109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.042 3.958 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.170 6.170 10 C 0.177 3.823 11 C -0.204 4.204 12 C -0.043 4.043 13 C -0.219 4.219 14 C 0.196 3.804 15 C -0.264 4.264 16 N -0.659 5.659 17 C 0.522 3.478 18 O -0.548 6.548 19 C -0.137 4.137 20 C -0.058 4.058 21 H 0.271 0.729 22 H 0.121 0.879 23 H 0.120 0.880 24 H 0.133 0.867 25 H 0.407 0.593 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.067 0.933 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.517 -9.446 0.302 10.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.072 6.072 10 C 0.121 3.879 11 C -0.224 4.224 12 C -0.062 4.062 13 C -0.223 4.223 14 C 0.101 3.899 15 C -0.285 4.285 16 N -0.303 5.303 17 C 0.311 3.689 18 O -0.426 6.426 19 C -0.176 4.176 20 C -0.096 4.096 21 H 0.081 0.919 22 H 0.139 0.861 23 H 0.138 0.862 24 H 0.150 0.850 25 H 0.245 0.755 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.086 0.914 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.700 -9.376 0.233 10.975 hybrid contribution 0.591 1.366 0.050 1.489 sum 6.291 -8.011 0.283 10.189 Atomic orbital electron populations 1.70038 1.05988 1.27820 1.45342 1.25307 0.95860 0.98914 0.96275 0.85637 0.79148 0.80225 0.78375 1.19068 1.20038 1.20021 1.21377 0.91828 0.80703 1.53123 0.88959 1.83997 1.34181 1.11487 1.77554 1.19084 0.89299 0.88208 0.91281 1.20214 0.99857 0.90090 1.12245 1.20310 0.91802 0.97139 0.96904 1.18923 0.94008 0.92399 1.16939 1.17321 0.80997 0.94003 0.97578 1.20708 0.93999 0.97362 1.16475 1.43627 1.05805 1.12862 1.67959 1.20751 0.86912 0.86249 0.74966 1.90729 1.14179 1.85982 1.51705 1.21654 0.98427 0.94481 1.03069 1.20147 0.93707 0.96098 0.99616 0.91876 0.86076 0.86221 0.84959 0.75548 0.88148 0.88247 0.91435 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.30 13.67 55.48 0.76 -23.54 15 2 C 0.04 1.10 5.49 -17.52 -0.10 1.01 15 3 Si 0.94 19.89 29.55 -169.99 -5.02 14.87 15 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 5 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 7 C -0.39 -10.56 9.49 30.88 0.29 -10.26 15 8 H 0.09 2.28 5.20 -52.48 -0.27 2.01 15 9 O -0.17 -4.60 9.76 0.06 0.00 -4.60 15 10 C 0.18 4.00 6.65 -39.13 -0.26 3.74 15 11 C -0.20 -3.95 9.99 -39.36 -0.39 -4.34 15 12 C -0.04 -0.68 9.68 -39.64 -0.38 -1.06 15 13 C -0.22 -3.47 5.66 -104.39 -0.59 -4.06 15 14 C 0.20 3.45 6.50 -83.76 -0.54 2.91 15 15 C -0.26 -5.39 9.04 -39.21 -0.35 -5.74 15 16 N -0.66 -10.55 5.36 -10.02 -0.05 -10.61 15 17 C 0.52 8.21 7.72 -11.19 -0.09 8.12 15 18 O -0.55 -10.12 17.91 5.55 0.10 -10.02 15 19 C -0.14 -1.65 6.07 -28.05 -0.17 -1.82 15 20 C -0.06 -0.70 6.00 -27.96 -0.17 -0.87 15 21 H 0.27 7.03 8.31 -40.82 -0.34 6.69 15 22 H 0.12 2.24 8.06 -52.48 -0.42 1.82 15 23 H 0.12 1.49 8.06 -52.48 -0.42 1.07 15 24 H 0.13 2.72 5.64 -52.48 -0.30 2.42 15 25 H 0.41 6.09 8.83 -40.82 -0.36 5.73 15 26 H 0.10 1.03 8.14 -51.93 -0.42 0.60 15 27 H 0.10 1.11 8.14 -51.93 -0.42 0.68 15 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 29 H 0.08 0.78 8.06 -51.93 -0.42 0.36 15 LS Contribution 256.44 15.07 3.86 3.86 Total: -1.00 -30.58 256.44 -5.70 -36.28 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -2.60 Total: 6.14 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -2.75 Total: -12.39 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.70 Total: -34.15 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.10 Total: -14.62 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.58 -5.70 -36.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159059939.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.249 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds