Wall clock time and date at job start Mon Mar 30 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86797 * 119.99787 * 2 1 4 4 H 1.48497 * 109.47638 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47090 * 300.00312 * 3 2 1 6 6 H 1.48504 * 109.47188 * 59.99714 * 3 2 1 7 7 C 1.38650 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99993 * 180.02562 * 7 2 1 9 9 O 1.34829 * 120.00494 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00493 * 185.05789 * 9 7 2 11 11 C 1.38947 * 120.03037 * 174.49001 * 10 9 7 12 12 C 1.38135 * 120.07674 * 179.97438 * 11 10 9 13 13 C 1.38168 * 120.12096 * 0.03490 * 12 11 10 14 14 C 1.38946 * 120.08359 * 359.94385 * 13 12 11 15 15 C 1.38731 * 119.92961 * 0.05334 * 14 13 12 16 16 N 1.39836 * 119.92636 * 180.02562 * 14 13 12 17 17 C 1.34554 * 120.45851 * 18.81380 * 16 14 13 18 18 O 1.21286 * 119.61414 * 180.48569 * 17 16 14 19 19 C 1.50494 * 120.77358 * 0.25201 * 17 16 14 20 20 C 1.50686 * 120.11341 * 179.97438 * 13 12 11 21 21 H 0.96995 * 120.00200 * 359.97438 * 1 2 3 22 22 H 1.08003 * 119.95769 * 359.97438 * 11 10 9 23 23 H 1.08003 * 119.93985 * 179.97438 * 12 11 10 24 24 H 1.08008 * 120.07456 * 179.97438 * 15 14 13 25 25 H 0.96995 * 119.76872 * 198.53150 * 16 14 13 26 26 H 1.08998 * 109.49072 * 204.99256 * 19 17 16 27 27 H 1.08999 * 109.18910 * 85.33107 * 19 17 16 28 28 H 1.09002 * 109.46090 * 266.02329 * 20 13 12 29 29 H 1.09002 * 109.46068 * 25.99579 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3466 -0.0006 5 1 1.8906 2.3965 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3349 -2.3685 0.0016 10 6 2.0702 -3.5045 0.1087 11 6 1.4357 -4.7345 0.2315 12 6 2.1830 -5.8912 0.3400 13 6 3.5633 -5.8286 0.3275 14 6 4.2038 -4.6018 0.2045 15 6 3.4560 -3.4384 0.0953 16 7 5.6008 -4.5423 0.1917 17 6 6.3278 -5.6414 -0.0805 18 8 7.5388 -5.5745 -0.0788 19 6 5.6559 -6.9539 -0.3818 20 6 4.3783 -7.0904 0.4465 21 1 -0.4850 0.8400 0.0004 22 1 0.3570 -4.7862 0.2421 23 1 1.6876 -6.8460 0.4358 24 1 3.9514 -2.4834 0.0000 25 1 6.0488 -3.7021 0.3763 26 1 6.3333 -7.7730 -0.1405 27 1 5.4056 -6.9931 -1.4420 28 1 4.6394 -7.2569 1.4916 29 1 3.7957 -7.9351 0.0788 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159059939.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:26 Heat of formation + Delta-G solvation = -69.690669 kcal Electronic energy + Delta-G solvation = -15627.958829 eV Core-core repulsion = 12901.242809 eV Total energy + Delta-G solvation = -2726.716020 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.89304 -40.37621 -38.63876 -35.85125 -34.67217 -34.06879 -30.68338 -29.90947 -27.38630 -25.13105 -23.80045 -23.45391 -20.57237 -19.54498 -19.29612 -18.08398 -17.33980 -16.94457 -16.25396 -16.05885 -15.87838 -15.53553 -15.07353 -14.61551 -14.35656 -14.09326 -13.68121 -13.49419 -13.29971 -12.82419 -12.49538 -12.36926 -12.13742 -11.83582 -11.49038 -11.36961 -11.08604 -10.72468 -9.33639 -8.75553 -8.49337 -6.17359 0.33314 0.61853 1.34492 1.40490 1.51376 1.55497 2.06494 2.15505 2.79582 3.13126 3.41147 3.52861 3.91154 3.94430 4.16175 4.37707 4.45284 4.52716 4.65389 4.91631 4.97065 5.03566 5.11563 5.21724 5.25925 5.55961 5.64748 5.73614 5.98038 6.00702 6.30313 6.92398 6.95901 7.74694 8.73421 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.034087 B = 0.006836 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.241495 B = 4095.003657 C = 4872.811109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.018 4.018 3 Si 1.015 2.985 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.413 4.413 8 H 0.099 0.901 9 O -0.225 6.225 10 C 0.139 3.861 11 C -0.215 4.215 12 C -0.027 4.027 13 C -0.196 4.196 14 C 0.192 3.808 15 C -0.273 4.273 16 N -0.660 5.660 17 C 0.517 3.483 18 O -0.578 6.578 19 C -0.132 4.132 20 C -0.056 4.056 21 H 0.273 0.727 22 H 0.122 0.878 23 H 0.170 0.830 24 H 0.119 0.881 25 H 0.407 0.593 26 H 0.128 0.872 27 H 0.115 0.885 28 H 0.082 0.918 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.095 -12.361 0.436 14.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.217 4.217 3 Si 0.835 3.165 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.489 4.489 8 H 0.117 0.883 9 O -0.131 6.131 10 C 0.087 3.913 11 C -0.235 4.235 12 C -0.045 4.045 13 C -0.199 4.199 14 C 0.097 3.903 15 C -0.295 4.295 16 N -0.303 5.303 17 C 0.309 3.691 18 O -0.458 6.458 19 C -0.171 4.171 20 C -0.093 4.093 21 H 0.082 0.918 22 H 0.140 0.860 23 H 0.188 0.812 24 H 0.137 0.863 25 H 0.244 0.756 26 H 0.146 0.854 27 H 0.133 0.867 28 H 0.101 0.899 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.316 -12.351 0.370 14.360 hybrid contribution 0.259 1.903 0.035 1.920 sum 7.575 -10.449 0.405 12.912 Atomic orbital electron populations 1.70167 1.07869 1.28788 1.48542 1.26495 0.96802 1.02530 0.95831 0.84579 0.78156 0.75200 0.78610 1.17807 1.19352 1.19313 1.21794 0.92374 0.81465 1.53302 0.88323 1.83963 1.35613 1.12517 1.80961 1.19657 0.90378 0.88295 0.92944 1.20536 1.00493 0.90166 1.12293 1.20830 0.91765 0.97730 0.94220 1.19580 0.94538 0.93394 1.12436 1.17407 0.81637 0.93920 0.97370 1.20700 0.93580 0.98200 1.16999 1.43717 1.05183 1.13564 1.67836 1.21560 0.86636 0.87134 0.73818 1.90724 1.15629 1.86468 1.52972 1.21772 0.98630 0.92663 1.04017 1.20324 0.93310 0.94790 1.00868 0.91753 0.86019 0.81236 0.86287 0.75561 0.85411 0.86718 0.89943 0.86038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.88 13.67 21.61 0.30 -54.58 15 2 C -0.02 -1.02 5.49 84.83 0.47 -0.56 15 3 Si 1.01 42.25 29.55 68.60 2.03 44.28 15 4 H -0.25 -9.89 7.11 99.48 0.71 -9.18 15 5 H -0.27 -10.75 7.11 99.48 0.71 -10.05 15 6 H -0.27 -10.73 7.11 99.48 0.71 -10.02 15 7 C -0.41 -23.42 9.49 67.92 0.64 -22.78 15 8 H 0.10 5.17 5.20 -2.91 -0.02 5.16 15 9 O -0.22 -12.97 9.76 -22.69 -0.22 -13.19 15 10 C 0.14 6.50 6.65 22.56 0.15 6.65 15 11 C -0.22 -8.17 9.99 22.42 0.22 -7.95 15 12 C -0.03 -0.76 9.68 22.23 0.22 -0.54 15 13 C -0.20 -5.38 5.66 -19.72 -0.11 -5.49 15 14 C 0.19 6.44 6.50 38.15 0.25 6.69 15 15 C -0.27 -11.38 9.04 22.51 0.20 -11.18 15 16 N -0.66 -20.05 5.36 -304.11 -1.63 -21.68 15 17 C 0.52 14.73 7.72 87.63 0.68 15.41 15 18 O -0.58 -20.12 17.91 -3.05 -0.05 -20.18 15 19 C -0.13 -2.48 6.07 29.74 0.18 -2.30 15 20 C -0.06 -0.99 6.00 29.80 0.18 -0.81 15 21 H 0.27 14.97 8.31 -92.71 -0.77 14.20 15 22 H 0.12 4.53 8.06 -2.91 -0.02 4.50 15 23 H 0.17 3.09 8.06 -2.91 -0.02 3.07 15 24 H 0.12 5.16 5.64 -2.91 -0.02 5.14 15 25 H 0.41 12.02 8.83 -92.71 -0.82 11.20 15 26 H 0.13 1.84 8.14 -2.39 -0.02 1.82 15 27 H 0.11 1.91 8.14 -2.39 -0.02 1.89 15 28 H 0.08 1.36 8.14 -2.39 -0.02 1.34 15 29 H 0.12 1.33 8.06 -2.39 -0.02 1.31 15 Total: -1.00 -71.68 256.44 3.87 -67.82 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.38 Total: 20.39 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 3.08 Total: -22.86 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -1.33 Total: -76.26 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.28 Total: -33.37 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -71.68 3.87 -67.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159059939.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.876 kcal (2) G-P(sol) polarization free energy of solvation -71.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds