Wall clock time and date at job start Mon Mar 30 2020 03:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39531 * 123.87679 * 2 1 4 4 C 1.39362 * 130.82570 * 0.02562 * 3 2 1 5 5 C 1.37934 * 120.13612 * 180.02562 * 4 3 2 6 6 C 1.38309 * 120.37151 * 359.96604 * 5 4 3 7 7 C 1.38397 * 119.82644 * 0.02562 * 6 5 4 8 8 C 1.37683 * 119.91347 * 0.02562 * 7 6 5 9 9 C 1.51136 * 132.84913 * 179.97438 * 8 7 6 10 10 O 1.42895 * 110.51296 * 298.64941 * 9 8 7 11 11 C 1.50700 * 110.50880 * 61.35837 * 9 8 7 12 12 H 1.07998 * 120.00259 * 87.77886 * 11 9 8 13 13 C 1.37875 * 119.99700 * 267.77842 * 11 9 8 14 14 N 1.31520 * 119.99338 * 184.66825 * 13 11 9 15 15 Si 1.86800 * 120.00294 * 4.67004 * 13 11 9 16 16 H 1.48494 * 109.47213 * 56.06511 * 15 13 11 17 17 H 1.48501 * 109.46798 * 176.06594 * 15 13 11 18 18 H 1.48496 * 109.46812 * 296.06469 * 15 13 11 19 19 C 1.34370 * 123.87594 * 179.97438 * 2 1 3 20 20 O 1.21291 * 126.44238 * 0.03404 * 19 2 1 21 21 H 1.09001 * 109.46840 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46542 * 299.99502 * 1 2 3 23 23 H 1.09000 * 109.47503 * 59.99490 * 1 2 3 24 24 H 1.08005 * 119.93442 * 359.97438 * 4 3 2 25 25 H 1.08003 * 119.81650 * 179.97438 * 5 4 3 26 26 H 1.07996 * 120.08846 * 180.02562 * 6 5 4 27 27 H 1.08001 * 120.04276 * 180.02562 * 7 6 5 28 28 H 0.96701 * 114.00435 * 178.13321 * 10 9 8 29 29 H 0.97005 * 119.99143 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2427 1.1584 0.0000 4 6 1.8751 2.5027 0.0005 5 6 2.8430 3.4854 -0.0002 6 6 4.1839 3.1462 -0.0006 7 6 4.5568 1.8134 -0.0009 8 6 3.5925 0.8306 -0.0013 9 6 3.6636 -0.6790 -0.0022 10 8 4.3279 -1.1483 -1.1771 11 6 4.3644 -1.1753 1.2362 12 1 3.8009 -1.3578 2.1392 13 6 5.7252 -1.3964 1.2163 14 7 6.3223 -1.9160 2.2667 15 14 6.7207 -0.9580 -0.3023 16 1 6.5136 0.4747 -0.6333 17 1 8.1614 -1.2016 -0.0371 18 1 6.2784 -1.7986 -1.4437 19 6 2.2140 -1.1156 0.0005 20 8 1.8055 -2.2576 0.0004 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 0.8301 2.7756 0.0005 25 1 2.5522 4.5255 -0.0002 26 1 4.9379 3.9194 -0.0007 27 1 5.6028 1.5446 -0.0008 28 1 4.4268 -2.1095 -1.2157 29 1 7.2796 -2.0719 2.2525 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169508262.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:55 Heat of formation + Delta-G solvation = -25.129741 kcal Electronic energy + Delta-G solvation = -16632.145954 eV Core-core repulsion = 13907.362241 eV Total energy + Delta-G solvation = -2724.783713 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.97094 -37.80638 -36.16908 -35.25285 -32.52642 -31.36458 -29.78903 -27.54295 -26.77374 -23.70326 -21.93475 -20.89181 -19.71517 -17.72606 -17.00977 -16.34539 -15.64206 -15.29392 -14.97270 -14.69198 -13.76134 -13.67155 -13.56039 -12.84561 -12.73753 -12.32030 -12.19061 -12.11389 -11.91579 -11.63594 -11.13225 -10.65185 -10.14280 -9.90263 -9.62315 -9.53177 -8.68172 -8.47900 -8.25509 -7.40196 -6.32496 -4.45137 1.71484 1.87554 3.11793 3.24284 3.30086 3.43901 3.57040 4.31292 4.33344 4.83036 4.88595 5.18915 5.23118 5.37132 5.52215 5.54488 5.64717 5.79637 5.84131 6.01785 6.11993 6.42448 6.62783 6.85559 6.99939 7.08118 7.26029 7.28339 7.64251 7.95071 8.38274 8.57542 8.66334 9.22784 10.76067 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.023906 B = 0.014009 C = 0.010215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.982822 B = 1998.234725 C = 2740.508535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.561 5.561 3 C 0.138 3.862 4 C -0.149 4.149 5 C -0.102 4.102 6 C -0.150 4.150 7 C -0.068 4.068 8 C -0.088 4.088 9 C 0.236 3.764 10 O -0.542 6.542 11 C -0.543 4.543 12 H 0.084 0.916 13 C 0.077 3.923 14 N -0.873 5.873 15 Si 0.944 3.056 16 H -0.260 1.260 17 H -0.321 1.321 18 H -0.278 1.278 19 C 0.519 3.481 20 O -0.505 6.505 21 H 0.084 0.916 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.116 0.884 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.138 0.862 28 H 0.385 0.615 29 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.309 9.104 -5.535 12.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.285 5.285 3 C 0.043 3.957 4 C -0.170 4.170 5 C -0.121 4.121 6 C -0.169 4.169 7 C -0.086 4.086 8 C -0.091 4.091 9 C 0.193 3.807 10 O -0.352 6.352 11 C -0.580 4.580 12 H 0.102 0.898 13 C -0.129 4.129 14 N -0.507 5.507 15 Si 0.779 3.221 16 H -0.187 1.187 17 H -0.252 1.252 18 H -0.206 1.206 19 C 0.308 3.692 20 O -0.379 6.379 21 H 0.103 0.897 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.134 0.866 25 H 0.139 0.861 26 H 0.139 0.861 27 H 0.155 0.845 28 H 0.237 0.763 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.497 8.899 -5.548 12.336 hybrid contribution 0.214 -0.344 -0.320 0.516 sum -6.283 8.554 -5.867 12.128 Atomic orbital electron populations 1.21712 0.79106 1.03890 1.01680 1.45835 1.06418 1.06145 1.70137 1.18207 0.90476 0.87330 0.99707 1.20158 0.99449 0.89319 1.08055 1.20670 0.92679 0.98121 1.00627 1.21003 0.95862 0.95734 1.04264 1.20921 1.00361 0.91234 0.96060 1.20122 0.91739 0.95706 1.01503 1.18558 0.86482 0.88084 0.87571 1.86393 1.77032 1.28349 1.43443 1.20765 0.93923 1.47246 0.96068 0.89792 1.25089 0.97439 0.92738 0.97670 1.69925 1.11110 1.39720 1.29935 0.86122 0.74861 0.80221 0.80888 1.18674 1.25196 1.20586 1.22131 0.90550 0.83675 0.72810 1.90628 1.79350 1.19280 1.48649 0.89674 0.91814 0.91880 0.86581 0.86105 0.86116 0.84455 0.76346 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 10.86 59.85 0.65 1.80 15 2 N -0.56 -11.17 3.13 -120.62 -0.38 -11.55 15 3 C 0.14 2.72 6.70 -83.69 -0.56 2.16 15 4 C -0.15 -2.36 9.84 -39.27 -0.39 -2.74 15 5 C -0.10 -1.49 10.02 -39.67 -0.40 -1.89 15 6 C -0.15 -2.43 10.07 -39.50 -0.40 -2.83 15 7 C -0.07 -1.37 9.52 -39.73 -0.38 -1.75 15 8 C -0.09 -1.94 5.20 -104.37 -0.54 -2.49 15 9 C 0.24 5.76 0.88 -93.52 -0.08 5.68 15 10 O -0.54 -12.65 8.60 -35.23 -0.30 -12.95 15 11 C -0.54 -15.18 8.83 -34.44 -0.30 -15.48 15 12 H 0.08 2.61 8.06 -52.49 -0.42 2.19 15 13 C 0.08 2.14 5.47 -17.82 -0.10 2.04 15 14 N -0.87 -25.66 13.96 55.43 0.77 -24.89 15 15 Si 0.94 22.28 24.22 -169.99 -4.12 18.17 15 16 H -0.26 -5.77 4.39 56.52 0.25 -5.52 15 17 H -0.32 -7.70 7.11 56.52 0.40 -7.30 15 18 H -0.28 -6.32 5.77 56.52 0.33 -5.99 15 19 C 0.52 12.26 7.23 -10.83 -0.08 12.18 15 20 O -0.51 -12.81 17.43 5.55 0.10 -12.71 15 21 H 0.08 1.27 7.57 -51.93 -0.39 0.87 15 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 24 H 0.12 1.48 8.06 -52.48 -0.42 1.06 15 25 H 0.12 1.33 8.06 -52.48 -0.42 0.91 15 26 H 0.12 1.59 8.06 -52.49 -0.42 1.17 15 27 H 0.14 2.89 4.55 -52.49 -0.24 2.65 15 28 H 0.39 8.39 7.84 45.56 0.36 8.74 15 29 H 0.27 7.46 8.31 -40.82 -0.34 7.12 15 LS Contribution 245.98 15.07 3.71 3.71 Total: -1.00 -31.95 245.98 -4.97 -36.92 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -2.18 Total: 6.63 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -2.57 Total: -3.32 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.40 Total: -36.44 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.21 Total: -25.67 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.12 Total: 18.17 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -31.95 -4.97 -36.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169508262.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.788 kcal (2) G-P(sol) polarization free energy of solvation -31.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds