Wall clock time and date at job start Mon Mar 30 2020 03:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39531 * 123.87679 * 2 1 4 4 C 1.39362 * 130.82570 * 0.02562 * 3 2 1 5 5 C 1.37934 * 120.13612 * 180.02562 * 4 3 2 6 6 C 1.38309 * 120.37151 * 359.96604 * 5 4 3 7 7 C 1.38397 * 119.82644 * 0.02562 * 6 5 4 8 8 C 1.37683 * 119.91347 * 0.02562 * 7 6 5 9 9 C 1.51136 * 132.84913 * 179.97438 * 8 7 6 10 10 O 1.42895 * 110.51296 * 298.64941 * 9 8 7 11 11 C 1.50700 * 110.50880 * 61.35837 * 9 8 7 12 12 H 1.07998 * 120.00259 * 87.77886 * 11 9 8 13 13 C 1.37875 * 119.99700 * 267.77842 * 11 9 8 14 14 N 1.31520 * 119.99338 * 184.66825 * 13 11 9 15 15 Si 1.86800 * 120.00294 * 4.67004 * 13 11 9 16 16 H 1.48494 * 109.47213 * 56.06511 * 15 13 11 17 17 H 1.48501 * 109.46798 * 176.06594 * 15 13 11 18 18 H 1.48496 * 109.46812 * 296.06469 * 15 13 11 19 19 C 1.34370 * 123.87594 * 179.97438 * 2 1 3 20 20 O 1.21291 * 126.44238 * 0.03404 * 19 2 1 21 21 H 1.09001 * 109.46840 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46542 * 299.99502 * 1 2 3 23 23 H 1.09000 * 109.47503 * 59.99490 * 1 2 3 24 24 H 1.08005 * 119.93442 * 359.97438 * 4 3 2 25 25 H 1.08003 * 119.81650 * 179.97438 * 5 4 3 26 26 H 1.07996 * 120.08846 * 180.02562 * 6 5 4 27 27 H 1.08001 * 120.04276 * 180.02562 * 7 6 5 28 28 H 0.96701 * 114.00435 * 178.13321 * 10 9 8 29 29 H 0.97005 * 119.99143 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2427 1.1584 0.0000 4 6 1.8751 2.5027 0.0005 5 6 2.8430 3.4854 -0.0002 6 6 4.1839 3.1462 -0.0006 7 6 4.5568 1.8134 -0.0009 8 6 3.5925 0.8306 -0.0013 9 6 3.6636 -0.6790 -0.0022 10 8 4.3279 -1.1483 -1.1771 11 6 4.3644 -1.1753 1.2362 12 1 3.8009 -1.3578 2.1392 13 6 5.7252 -1.3964 1.2163 14 7 6.3223 -1.9160 2.2667 15 14 6.7207 -0.9580 -0.3023 16 1 6.5136 0.4747 -0.6333 17 1 8.1614 -1.2016 -0.0371 18 1 6.2784 -1.7986 -1.4437 19 6 2.2140 -1.1156 0.0005 20 8 1.8055 -2.2576 0.0004 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 0.8301 2.7756 0.0005 25 1 2.5522 4.5255 -0.0002 26 1 4.9379 3.9194 -0.0007 27 1 5.6028 1.5446 -0.0008 28 1 4.4268 -2.1095 -1.2157 29 1 7.2796 -2.0719 2.2525 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169508262.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:55 Heat of formation + Delta-G solvation = -49.883269 kcal Electronic energy + Delta-G solvation = -16633.219348 eV Core-core repulsion = 13907.362241 eV Total energy + Delta-G solvation = -2725.857107 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.56861 -39.37676 -37.97595 -36.81143 -34.63287 -32.91409 -31.12595 -29.20289 -28.37082 -25.45822 -23.37893 -22.39718 -21.35793 -19.69130 -18.62888 -17.92296 -17.49251 -16.96835 -16.53384 -16.30335 -15.35523 -15.26911 -14.95707 -14.55961 -14.29521 -14.14396 -13.75824 -13.66522 -13.36526 -13.12306 -12.68081 -12.46075 -11.97295 -11.54809 -11.39929 -11.28375 -10.60761 -10.29755 -9.71793 -8.84747 -8.48237 -6.66016 0.25520 0.51363 1.40605 1.41283 1.48091 1.67120 1.80021 2.33584 2.81553 2.96657 3.25996 3.48287 3.83271 4.12874 4.26375 4.35078 4.41254 4.46615 4.65453 4.68022 4.74893 5.03864 5.11090 5.21137 5.54618 5.69335 5.74750 5.81160 5.82330 6.21526 6.33990 6.53950 6.86119 7.07973 8.64946 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.023906 B = 0.014009 C = 0.010215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.982822 B = 1998.234725 C = 2740.508535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.556 5.556 3 C 0.115 3.885 4 C -0.132 4.132 5 C -0.084 4.084 6 C -0.140 4.140 7 C -0.095 4.095 8 C -0.128 4.128 9 C 0.229 3.771 10 O -0.540 6.540 11 C -0.552 4.552 12 H 0.031 0.969 13 C 0.032 3.968 14 N -0.923 5.923 15 Si 1.000 3.000 16 H -0.236 1.236 17 H -0.324 1.324 18 H -0.265 1.265 19 C 0.506 3.494 20 O -0.541 6.541 21 H 0.076 0.924 22 H 0.089 0.911 23 H 0.098 0.902 24 H 0.158 0.842 25 H 0.174 0.826 26 H 0.156 0.844 27 H 0.121 0.879 28 H 0.387 0.613 29 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.613 12.956 -7.203 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.280 5.280 3 C 0.021 3.979 4 C -0.152 4.152 5 C -0.102 4.102 6 C -0.158 4.158 7 C -0.113 4.113 8 C -0.131 4.131 9 C 0.186 3.814 10 O -0.350 6.350 11 C -0.589 4.589 12 H 0.050 0.950 13 C -0.170 4.170 14 N -0.559 5.559 15 Si 0.831 3.169 16 H -0.162 1.162 17 H -0.256 1.256 18 H -0.192 1.192 19 C 0.295 3.705 20 O -0.419 6.419 21 H 0.094 0.906 22 H 0.107 0.893 23 H 0.116 0.884 24 H 0.175 0.825 25 H 0.191 0.809 26 H 0.174 0.826 27 H 0.138 0.862 28 H 0.238 0.762 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.841 12.808 -7.221 16.663 hybrid contribution 0.509 -1.413 0.260 1.524 sum -7.333 11.395 -6.961 15.234 Atomic orbital electron populations 1.22070 0.75841 1.04397 1.04589 1.45766 1.08330 1.05158 1.68701 1.18552 0.89336 0.88677 1.01372 1.20710 1.02080 0.87294 1.05132 1.21302 0.91397 1.00368 0.97176 1.21441 0.97976 0.94448 1.01952 1.21003 0.99257 0.93009 0.98038 1.20049 0.94019 0.94017 1.04982 1.18508 0.86798 0.90236 0.85833 1.86363 1.77124 1.28579 1.42950 1.20787 0.94138 1.47875 0.96092 0.95037 1.25924 0.98256 0.92156 1.00623 1.70044 1.11609 1.41850 1.32410 0.85189 0.72729 0.81594 0.77413 1.16178 1.25574 1.19220 1.21954 0.91084 0.84219 0.73254 1.90584 1.79912 1.20602 1.50759 0.90554 0.89265 0.88398 0.82451 0.80857 0.82622 0.86177 0.76189 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.91 10.86 127.77 1.39 3.30 15 2 N -0.56 -21.54 3.13 -654.14 -2.05 -23.59 15 3 C 0.12 4.26 6.70 38.35 0.26 4.51 15 4 C -0.13 -3.45 9.84 22.47 0.22 -3.22 15 5 C -0.08 -1.91 10.02 22.21 0.22 -1.69 15 6 C -0.14 -3.88 10.07 22.32 0.22 -3.66 15 7 C -0.09 -3.68 9.52 22.18 0.21 -3.47 15 8 C -0.13 -5.59 5.20 -19.70 -0.10 -5.69 15 9 C 0.23 11.50 0.88 -12.67 -0.01 11.49 15 10 O -0.54 -25.57 8.60 -148.98 -1.28 -26.86 15 11 C -0.55 -32.67 8.83 25.60 0.23 -32.45 15 12 H 0.03 2.12 8.06 -2.91 -0.02 2.10 15 13 C 0.03 1.85 5.47 84.65 0.46 2.31 15 14 N -0.92 -57.15 13.96 21.45 0.30 -56.85 15 15 Si 1.00 46.86 24.22 68.60 1.66 48.52 15 16 H -0.24 -10.16 4.39 99.48 0.44 -9.72 15 17 H -0.32 -15.26 7.11 99.48 0.71 -14.55 15 18 H -0.27 -11.76 5.77 99.48 0.57 -11.18 15 19 C 0.51 24.57 7.23 87.94 0.64 25.20 15 20 O -0.54 -28.67 17.43 -3.06 -0.05 -28.73 15 21 H 0.08 2.19 7.57 -2.39 -0.02 2.18 15 22 H 0.09 1.95 8.14 -2.38 -0.02 1.93 15 23 H 0.10 1.97 8.14 -2.39 -0.02 1.95 15 24 H 0.16 2.84 8.06 -2.91 -0.02 2.82 15 25 H 0.17 2.26 8.06 -2.91 -0.02 2.23 15 26 H 0.16 3.21 8.06 -2.91 -0.02 3.18 15 27 H 0.12 4.94 4.55 -2.91 -0.01 4.93 15 28 H 0.39 17.38 7.84 -74.06 -0.58 16.80 15 29 H 0.28 15.81 8.31 -92.70 -0.77 15.04 15 Total: -1.00 -75.66 245.98 2.51 -73.15 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.20 Total: 17.71 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: 3.73 Total: -3.35 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -1.75 Total: -80.44 kcal Atomic # 8 Polarization: -54.25 SS G_CDS: -1.34 Total: -55.58 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.66 Total: 48.52 kcal Total: -75.66 2.51 -73.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169508262.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.266 kcal (2) G-P(sol) polarization free energy of solvation -75.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds