Wall clock time and date at job start Mon Mar 30 2020 03:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39536 * 123.87658 * 2 1 4 4 C 1.39363 * 130.82741 * 359.94596 * 3 2 1 5 5 C 1.37938 * 120.13225 * 180.02562 * 4 3 2 6 6 C 1.38294 * 120.37373 * 0.02574 * 5 4 3 7 7 C 1.38393 * 119.82882 * 359.95270 * 6 5 4 8 8 C 1.37675 * 119.91170 * 0.04523 * 7 6 5 9 9 C 1.51132 * 132.84816 * 179.97438 * 8 7 6 10 10 O 1.42907 * 110.50821 * 61.24109 * 9 8 7 11 11 C 1.50707 * 110.51298 * 298.67121 * 9 8 7 12 12 H 1.08004 * 119.99621 * 357.28240 * 11 9 8 13 13 C 1.37873 * 119.99964 * 177.27368 * 11 9 8 14 14 N 1.31513 * 120.00359 * 1.24586 * 13 11 9 15 15 Si 1.86800 * 119.99670 * 181.24137 * 13 11 9 16 16 H 1.48504 * 109.47263 * 180.02562 * 15 13 11 17 17 H 1.48502 * 109.47168 * 300.00219 * 15 13 11 18 18 H 1.48496 * 109.47238 * 60.00376 * 15 13 11 19 19 C 1.34674 * 123.83584 * 179.87927 * 2 1 3 20 20 O 1.21291 * 126.60750 * 0.05763 * 19 2 1 21 21 H 1.09000 * 109.47125 * 90.00298 * 1 2 3 22 22 H 1.09007 * 109.46883 * 209.99968 * 1 2 3 23 23 H 1.08994 * 109.47229 * 330.00097 * 1 2 3 24 24 H 1.08005 * 119.93234 * 0.02562 * 4 3 2 25 25 H 1.08004 * 119.81289 * 180.02562 * 5 4 3 26 26 H 1.08009 * 120.08543 * 179.97438 * 6 5 4 27 27 H 1.07999 * 120.04205 * 180.02562 * 7 6 5 28 28 H 0.96704 * 113.99749 * 170.86164 * 10 9 8 29 29 H 0.97003 * 119.99829 * 5.87053 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2428 1.1585 0.0000 4 6 1.8751 2.5027 -0.0010 5 6 2.8432 3.4854 -0.0013 6 6 4.1839 3.1462 -0.0011 7 6 4.5568 1.8134 0.0003 8 6 3.5925 0.8308 0.0006 9 6 3.6636 -0.6789 0.0016 10 8 4.3300 -1.1480 1.1754 11 6 4.3652 -1.1753 -1.2364 12 1 4.6936 -0.4737 -1.9890 13 6 4.5880 -2.5251 -1.4081 14 7 4.1666 -3.3815 -0.5033 15 14 5.4884 -3.1373 -2.9259 16 1 5.5982 -4.6174 -2.8730 17 1 4.7346 -2.7405 -4.1423 18 1 6.8477 -2.5410 -2.9693 19 6 2.2149 -1.1187 0.0024 20 8 1.8089 -2.2616 0.0038 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8901 0.5139 23 1 -0.3633 0.8899 0.5138 24 1 0.8301 2.7757 -0.0015 25 1 2.5525 4.5256 -0.0016 26 1 4.9380 3.9194 -0.0018 27 1 5.6028 1.5446 0.0009 28 1 4.2822 -2.1060 1.2985 29 1 3.6258 -3.0739 0.2409 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169508263.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:58 Heat of formation + Delta-G solvation = -32.525380 kcal Electronic energy + Delta-G solvation = -16617.175224 eV Core-core repulsion = 13892.070812 eV Total energy + Delta-G solvation = -2725.104412 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.85719 -37.79159 -35.84669 -35.13051 -32.15625 -31.32096 -29.74685 -27.31691 -26.32894 -23.51109 -21.83830 -20.86531 -19.70808 -18.06338 -16.92747 -16.23784 -15.39045 -15.14539 -14.55093 -13.85159 -13.74966 -13.68154 -13.54551 -13.04310 -12.56275 -12.30685 -12.10145 -11.91548 -11.43634 -11.20725 -10.85534 -10.53132 -10.41988 -10.14723 -9.86480 -9.15932 -8.62480 -8.53903 -8.17572 -7.34454 -6.50402 -4.42707 1.72698 1.83474 3.27896 3.35313 3.37451 3.43467 3.58182 4.30381 4.39494 4.90887 5.01646 5.17740 5.35405 5.37194 5.58543 5.65399 5.74193 5.80890 5.88397 6.05385 6.17869 6.36153 6.62521 6.83246 7.02299 7.17035 7.34031 7.60210 7.70814 8.16077 8.51742 8.71528 8.83398 9.32497 10.78182 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.026960 B = 0.011261 C = 0.009234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.322462 B = 2485.833980 C = 3031.644087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.565 5.565 3 C 0.150 3.850 4 C -0.156 4.156 5 C -0.097 4.097 6 C -0.156 4.156 7 C -0.051 4.051 8 C -0.090 4.090 9 C 0.253 3.747 10 O -0.566 6.566 11 C -0.614 4.614 12 H 0.068 0.932 13 C 0.035 3.965 14 N -0.873 5.873 15 Si 1.075 2.925 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.283 1.283 19 C 0.496 3.504 20 O -0.492 6.492 21 H 0.057 0.943 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.116 0.884 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.127 0.873 28 H 0.376 0.624 29 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.453 10.650 0.554 11.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.290 5.290 3 C 0.054 3.946 4 C -0.178 4.178 5 C -0.116 4.116 6 C -0.176 4.176 7 C -0.069 4.069 8 C -0.093 4.093 9 C 0.211 3.789 10 O -0.375 6.375 11 C -0.651 4.651 12 H 0.086 0.914 13 C -0.175 4.175 14 N -0.514 5.514 15 Si 0.902 3.098 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.209 1.209 19 C 0.286 3.714 20 O -0.364 6.364 21 H 0.075 0.925 22 H 0.095 0.905 23 H 0.088 0.912 24 H 0.134 0.866 25 H 0.139 0.861 26 H 0.139 0.861 27 H 0.145 0.855 28 H 0.228 0.772 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.110 9.151 -0.021 9.665 hybrid contribution -1.146 0.861 0.503 1.520 sum -4.257 10.013 0.481 10.891 Atomic orbital electron populations 1.21672 0.79555 1.02977 1.01974 1.46100 1.06168 1.06110 1.70635 1.18294 0.90729 0.87404 0.98189 1.20181 0.99527 0.89364 1.08679 1.20672 0.92693 0.98119 1.00106 1.20961 0.95866 0.95653 1.05073 1.20322 0.99338 0.91049 0.96219 1.19886 0.91773 0.95385 1.02251 1.18209 0.85584 0.87283 0.87812 1.86430 1.77611 1.28441 1.44987 1.22071 1.42126 0.95528 1.05414 0.91386 1.26069 0.96294 0.92799 1.02304 1.70768 1.29755 1.38414 1.12415 0.83472 0.75903 0.76551 0.73905 1.20309 1.21190 1.20865 1.23060 0.91237 0.83749 0.73306 1.90654 1.79155 1.18621 1.47966 0.92455 0.90531 0.91152 0.86566 0.86073 0.86053 0.85505 0.77184 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.77 59.85 0.64 1.96 15 2 N -0.57 -12.21 3.14 -120.54 -0.38 -12.59 15 3 C 0.15 3.09 6.69 -83.69 -0.56 2.53 15 4 C -0.16 -2.53 9.74 -39.27 -0.38 -2.91 15 5 C -0.10 -1.40 10.01 -39.67 -0.40 -1.80 15 6 C -0.16 -2.42 10.07 -39.50 -0.40 -2.82 15 7 C -0.05 -0.98 10.04 -39.73 -0.40 -1.38 15 8 C -0.09 -2.05 5.31 -104.37 -0.55 -2.61 15 9 C 0.25 6.71 1.00 -93.52 -0.09 6.62 15 10 O -0.57 -15.23 13.01 -35.23 -0.46 -15.69 15 11 C -0.61 -17.35 8.29 -34.44 -0.29 -17.63 15 12 H 0.07 1.89 7.77 -52.48 -0.41 1.48 15 13 C 0.04 1.00 5.27 -17.82 -0.09 0.91 15 14 N -0.87 -26.07 12.52 55.43 0.69 -25.38 15 15 Si 1.08 24.83 29.90 -169.99 -5.08 19.75 15 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 17 H -0.29 -6.36 7.11 56.52 0.40 -5.96 15 18 H -0.28 -6.15 7.11 56.52 0.40 -5.74 15 19 C 0.50 12.93 6.96 -10.69 -0.07 12.86 15 20 O -0.49 -13.95 14.98 5.55 0.08 -13.87 15 21 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.08 1.25 7.96 -51.92 -0.41 0.84 15 23 H 0.07 0.91 7.61 -51.93 -0.40 0.51 15 24 H 0.12 1.54 7.70 -52.48 -0.40 1.13 15 25 H 0.12 1.31 8.06 -52.48 -0.42 0.88 15 26 H 0.12 1.48 8.06 -52.48 -0.42 1.06 15 27 H 0.13 2.40 8.06 -52.49 -0.42 1.97 15 28 H 0.38 10.18 6.12 45.56 0.28 10.46 15 29 H 0.28 8.48 3.21 -40.82 -0.13 8.35 15 LS Contribution 251.69 15.07 3.79 3.79 Total: -1.00 -32.94 251.69 -5.90 -38.85 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -1.96 Total: 9.43 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -2.59 Total: -4.29 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.32 Total: -37.97 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.38 Total: -29.56 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -5.08 Total: 19.75 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -32.94 -5.90 -38.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169508263.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.320 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds