Wall clock time and date at job start Mon Mar 30 2020 03:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30627 * 1 3 3 Si 1.86799 * 120.00164 * 2 1 4 4 H 1.48500 * 109.46818 * 240.00006 * 3 2 1 5 5 H 1.48501 * 109.47006 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47378 * 119.99899 * 3 2 1 7 7 C 1.40327 * 119.99606 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99526 * 179.97438 * 7 2 1 9 9 C 1.40138 * 120.00270 * 0.02562 * 7 2 1 10 10 N 1.33171 * 126.34767 * 5.43024 * 9 7 2 11 11 C 1.32195 * 109.81372 * 179.97438 * 10 9 7 12 12 N 1.31470 * 109.75555 * 359.71395 * 11 10 9 13 13 N 1.37379 * 126.34739 * 185.42684 * 9 7 2 14 14 C 1.39743 * 127.03759 * 0.02562 * 13 9 7 15 15 C 1.38967 * 120.09467 * 312.09701 * 14 13 9 16 16 C 1.38067 * 119.94643 * 179.97438 * 15 14 13 17 17 C 1.38353 * 120.12851 * 0.02562 * 16 15 14 18 18 C 1.38276 * 120.18810 * 359.97438 * 17 16 15 19 19 C 1.38305 * 120.04908 * 0.02562 * 18 17 16 20 20 F 1.35103 * 120.06190 * 179.97438 * 19 18 17 21 21 H 0.96997 * 119.99867 * 0.02562 * 1 2 3 22 22 H 1.07993 * 125.12044 * 179.97438 * 11 10 9 23 23 H 1.08001 * 120.02376 * 0.02562 * 15 14 13 24 24 H 1.07997 * 119.93719 * 179.97438 * 16 15 14 25 25 H 1.08001 * 119.90577 * 179.72588 * 17 16 15 26 26 H 1.07993 * 119.97521 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0940 1.6963 -1.2125 5 1 1.2753 2.7464 -0.0006 6 1 3.0940 1.6964 1.2124 7 6 2.0078 -1.2153 0.0005 8 1 3.0878 -1.2153 0.0001 9 6 1.3071 -2.4289 0.0005 10 7 -0.0122 -2.5786 -0.1014 11 6 -0.3215 -3.8633 -0.0662 12 7 0.7736 -4.5810 0.0521 13 7 1.8539 -3.6848 0.1057 14 6 3.2081 -4.0053 0.2334 15 6 4.1446 -3.4237 -0.6127 16 6 5.4818 -3.7421 -0.4834 17 6 5.8913 -4.6396 0.4866 18 6 4.9641 -5.2216 1.3314 19 6 3.6227 -4.9080 1.2086 20 9 2.7164 -5.4768 2.0335 21 1 -0.4850 0.8400 -0.0004 22 1 -1.3227 -4.2633 -0.1297 23 1 3.8267 -2.7226 -1.3701 24 1 6.2094 -3.2904 -1.1413 25 1 6.9377 -4.8895 0.5816 26 1 5.2876 -5.9214 2.0876 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214342434.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:04 Heat of formation + Delta-G solvation = 63.372517 kcal Electronic energy + Delta-G solvation = -15672.915543 eV Core-core repulsion = 12860.802021 eV Total energy + Delta-G solvation = -2812.113522 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.066 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.21543 -40.06466 -38.25363 -33.80967 -32.91508 -30.29319 -29.59018 -28.42816 -26.02993 -22.86812 -22.36717 -20.23836 -20.11974 -17.57737 -16.81236 -16.31945 -15.81675 -15.14803 -14.94901 -14.40292 -13.72669 -13.61027 -13.35916 -12.88476 -12.52489 -11.97152 -11.82857 -11.60542 -11.35681 -11.03860 -10.91453 -10.50816 -10.11602 -9.59709 -9.20574 -8.47447 -8.00023 -7.93640 -7.63339 -6.78346 -4.86205 1.47741 1.55148 2.87193 2.99511 3.01563 3.32614 3.67992 3.88658 4.01893 4.45831 4.71205 5.07675 5.20356 5.34187 5.52672 5.68630 5.87986 6.02607 6.32773 6.39853 6.56875 6.69870 6.78161 6.98541 7.07269 7.48475 7.81995 8.16417 8.24958 8.54804 8.92370 10.02758 10.15962 Molecular weight = 233.07amu Principal moments of inertia in cm(-1) A = 0.024441 B = 0.010498 C = 0.007971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.320639 B = 2666.563356 C = 3512.032873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.079 3.921 3 Si 0.920 3.080 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.433 4.433 8 H 0.092 0.908 9 C 0.407 3.593 10 N -0.564 5.564 11 C 0.202 3.798 12 N -0.410 5.410 13 N -0.414 5.414 14 C 0.179 3.821 15 C -0.110 4.110 16 C -0.114 4.114 17 C -0.121 4.121 18 C -0.144 4.144 19 C 0.083 3.917 20 F -0.131 7.131 21 H 0.282 0.718 22 H 0.185 0.815 23 H 0.139 0.861 24 H 0.129 0.871 25 H 0.127 0.873 26 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.364 -1.854 -0.052 9.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.150 4.150 3 Si 0.743 3.257 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.473 4.473 8 H 0.110 0.890 9 C 0.165 3.835 10 N -0.299 5.299 11 C -0.101 4.101 12 N -0.242 5.242 13 N -0.202 5.202 14 C 0.081 3.919 15 C -0.131 4.131 16 C -0.133 4.133 17 C -0.140 4.140 18 C -0.164 4.164 19 C 0.061 3.939 20 F -0.109 7.109 21 H 0.093 0.907 22 H 0.201 0.799 23 H 0.157 0.843 24 H 0.147 0.853 25 H 0.145 0.855 26 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.777 -2.287 -0.023 9.070 hybrid contribution 0.240 0.669 0.229 0.747 sum 9.017 -1.618 0.207 9.163 Atomic orbital electron populations 1.69956 1.07315 1.29019 1.27504 1.25932 0.94971 1.01004 0.93089 0.86174 0.79929 0.79466 0.80145 1.18571 1.19879 1.18669 1.18585 0.94347 0.87308 1.47091 0.88972 1.21230 0.87732 0.84683 0.89887 1.71510 1.10132 1.14657 1.33581 1.25579 0.97438 0.90360 0.96761 1.78062 0.93601 1.15050 1.37492 1.47649 1.02370 1.05866 1.64278 1.17408 0.83012 0.97080 0.94366 1.21164 0.92383 1.01275 0.98250 1.20961 0.95014 0.98390 0.98908 1.20847 0.99019 0.98006 0.96164 1.20942 0.90750 1.02691 1.02005 1.17771 0.86727 0.98409 0.90979 1.91492 1.66794 1.82985 1.69654 0.90715 0.79855 0.84288 0.85324 0.85475 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.68 11.94 55.57 0.66 -18.02 15 2 C 0.08 1.93 5.50 -17.28 -0.10 1.83 15 3 Si 0.92 17.70 29.56 -169.99 -5.03 12.68 15 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 15 5 H -0.27 -5.13 7.11 56.52 0.40 -4.73 15 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 15 7 C -0.43 -11.23 8.57 -38.08 -0.33 -11.56 15 8 H 0.09 2.18 6.29 -52.49 -0.33 1.85 15 9 C 0.41 11.35 7.37 -155.54 -1.15 10.21 15 10 N -0.56 -16.13 9.42 -13.90 -0.13 -16.26 15 11 C 0.20 5.22 12.97 -92.09 -1.19 4.03 15 12 N -0.41 -10.97 12.26 29.23 0.36 -10.61 15 13 N -0.41 -10.89 3.63 -9.90 -0.04 -10.92 15 14 C 0.18 4.02 6.14 -83.62 -0.51 3.51 15 15 C -0.11 -2.06 8.39 -39.37 -0.33 -2.39 15 16 C -0.11 -1.65 10.04 -39.60 -0.40 -2.05 15 17 C -0.12 -1.64 10.04 -39.52 -0.40 -2.04 15 18 C -0.14 -2.27 10.02 -39.54 -0.40 -2.67 15 19 C 0.08 1.71 7.30 -39.20 -0.29 1.43 15 20 F -0.13 -2.95 16.73 2.25 0.04 -2.92 15 21 H 0.28 6.59 8.29 -40.82 -0.34 6.25 15 22 H 0.18 3.93 8.06 -52.49 -0.42 3.51 15 23 H 0.14 2.64 7.37 -52.49 -0.39 2.25 15 24 H 0.13 1.43 8.06 -52.49 -0.42 1.01 15 25 H 0.13 1.25 8.06 -52.49 -0.42 0.83 15 26 H 0.13 1.70 8.06 -52.49 -0.42 1.27 15 LS Contribution 245.37 15.07 3.70 3.70 Total: -1.00 -31.80 245.37 -7.06 -38.86 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -1.54 Total: 3.19 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -5.08 Total: 0.30 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.86 Total: -55.81 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.92 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.68 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.80 -7.06 -38.86 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214342434.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.232 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds