Wall clock time and date at job start Mon Mar 30 2020 03:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30627 * 1 3 3 Si 1.86799 * 120.00164 * 2 1 4 4 H 1.48500 * 109.46818 * 240.00006 * 3 2 1 5 5 H 1.48501 * 109.47006 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47378 * 119.99899 * 3 2 1 7 7 C 1.40327 * 119.99606 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99526 * 179.97438 * 7 2 1 9 9 C 1.40138 * 120.00270 * 0.02562 * 7 2 1 10 10 N 1.33171 * 126.34767 * 5.43024 * 9 7 2 11 11 C 1.32195 * 109.81372 * 179.97438 * 10 9 7 12 12 N 1.31470 * 109.75555 * 359.71395 * 11 10 9 13 13 N 1.37379 * 126.34739 * 185.42684 * 9 7 2 14 14 C 1.39743 * 127.03759 * 0.02562 * 13 9 7 15 15 C 1.38967 * 120.09467 * 312.09701 * 14 13 9 16 16 C 1.38067 * 119.94643 * 179.97438 * 15 14 13 17 17 C 1.38353 * 120.12851 * 0.02562 * 16 15 14 18 18 C 1.38276 * 120.18810 * 359.97438 * 17 16 15 19 19 C 1.38305 * 120.04908 * 0.02562 * 18 17 16 20 20 F 1.35103 * 120.06190 * 179.97438 * 19 18 17 21 21 H 0.96997 * 119.99867 * 0.02562 * 1 2 3 22 22 H 1.07993 * 125.12044 * 179.97438 * 11 10 9 23 23 H 1.08001 * 120.02376 * 0.02562 * 15 14 13 24 24 H 1.07997 * 119.93719 * 179.97438 * 16 15 14 25 25 H 1.08001 * 119.90577 * 179.72588 * 17 16 15 26 26 H 1.07993 * 119.97521 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0940 1.6963 -1.2125 5 1 1.2753 2.7464 -0.0006 6 1 3.0940 1.6964 1.2124 7 6 2.0078 -1.2153 0.0005 8 1 3.0878 -1.2153 0.0001 9 6 1.3071 -2.4289 0.0005 10 7 -0.0122 -2.5786 -0.1014 11 6 -0.3215 -3.8633 -0.0662 12 7 0.7736 -4.5810 0.0521 13 7 1.8539 -3.6848 0.1057 14 6 3.2081 -4.0053 0.2334 15 6 4.1446 -3.4237 -0.6127 16 6 5.4818 -3.7421 -0.4834 17 6 5.8913 -4.6396 0.4866 18 6 4.9641 -5.2216 1.3314 19 6 3.6227 -4.9080 1.2086 20 9 2.7164 -5.4768 2.0335 21 1 -0.4850 0.8400 -0.0004 22 1 -1.3227 -4.2633 -0.1297 23 1 3.8267 -2.7226 -1.3701 24 1 6.2094 -3.2904 -1.1413 25 1 6.9377 -4.8895 0.5816 26 1 5.2876 -5.9214 2.0876 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214342434.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:04 Heat of formation + Delta-G solvation = 44.541066 kcal Electronic energy + Delta-G solvation = -15673.732136 eV Core-core repulsion = 12860.802021 eV Total energy + Delta-G solvation = -2812.930115 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.066 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.82760 -41.96175 -39.66768 -35.69156 -34.56478 -31.83819 -31.36358 -30.04971 -27.95137 -24.43890 -23.82693 -22.12419 -21.82650 -19.31115 -18.41132 -18.06366 -17.33282 -16.77689 -16.55297 -15.80656 -15.51805 -15.25409 -14.87041 -14.68684 -14.07410 -13.65240 -13.37307 -12.93548 -12.83853 -12.70140 -12.50495 -12.09602 -11.86272 -11.36189 -10.90902 -10.01000 -9.98143 -9.83935 -9.28118 -8.61647 -6.83708 0.05473 0.22046 1.20340 1.41677 1.57472 1.64393 2.00194 2.24672 2.53354 2.64930 3.28425 3.34515 3.81091 4.02194 4.11657 4.35445 4.36298 4.58839 4.68865 5.06781 5.11012 5.18716 5.34725 5.42600 5.53954 5.85001 5.98536 6.22528 6.32883 6.64174 7.02724 8.05959 8.33539 Molecular weight = 233.07amu Principal moments of inertia in cm(-1) A = 0.024441 B = 0.010498 C = 0.007971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.320639 B = 2666.563356 C = 3512.032873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.032 3.968 3 Si 1.004 2.996 4 H -0.247 1.247 5 H -0.266 1.266 6 H -0.255 1.255 7 C -0.453 4.453 8 H 0.107 0.893 9 C 0.376 3.624 10 N -0.601 5.601 11 C 0.188 3.812 12 N -0.431 5.431 13 N -0.421 5.421 14 C 0.122 3.878 15 C -0.121 4.121 16 C -0.096 4.096 17 C -0.093 4.093 18 C -0.133 4.133 19 C 0.047 3.953 20 F -0.155 7.155 21 H 0.290 0.710 22 H 0.216 0.784 23 H 0.127 0.873 24 H 0.175 0.825 25 H 0.184 0.816 26 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.210 -1.154 -0.166 13.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.170 1.170 5 H -0.190 1.190 6 H -0.179 1.179 7 C -0.493 4.493 8 H 0.125 0.875 9 C 0.134 3.866 10 N -0.337 5.337 11 C -0.115 4.115 12 N -0.263 5.263 13 N -0.209 5.209 14 C 0.027 3.973 15 C -0.142 4.142 16 C -0.114 4.114 17 C -0.111 4.111 18 C -0.152 4.152 19 C 0.026 3.974 20 F -0.134 7.134 21 H 0.100 0.900 22 H 0.232 0.768 23 H 0.145 0.855 24 H 0.192 0.808 25 H 0.202 0.798 26 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 12.659 -1.635 -0.137 12.764 hybrid contribution -0.796 0.334 0.256 0.901 sum 11.862 -1.300 0.119 11.934 Atomic orbital electron populations 1.70060 1.09399 1.30651 1.28206 1.27108 0.95792 1.04722 0.91633 0.84939 0.78452 0.73743 0.80712 1.17045 1.19024 1.17931 1.19066 0.95210 0.87529 1.47487 0.87537 1.21682 0.88157 0.85967 0.90802 1.71431 1.11368 1.16023 1.34845 1.26187 0.98752 0.89890 0.96691 1.77881 0.94283 1.16468 1.37650 1.47663 1.03696 1.05111 1.64464 1.18040 0.81866 1.00182 0.97217 1.21280 0.93902 1.01205 0.97784 1.21502 0.93524 0.97343 0.99020 1.21527 1.01097 0.95106 0.93378 1.21409 0.88621 1.02516 1.02697 1.18312 0.88405 0.99332 0.91373 1.91419 1.68079 1.83477 1.70390 0.89958 0.76754 0.85547 0.80778 0.79840 0.81862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -40.83 11.94 21.89 0.26 -40.57 15 2 C 0.03 1.58 5.50 85.38 0.47 2.05 15 3 Si 1.00 35.70 29.56 68.60 2.03 37.73 15 4 H -0.25 -8.15 7.11 99.48 0.71 -7.44 15 5 H -0.27 -9.01 7.11 99.48 0.71 -8.30 15 6 H -0.26 -8.73 7.11 99.48 0.71 -8.02 15 7 C -0.45 -24.10 8.57 23.24 0.20 -23.90 15 8 H 0.11 5.11 6.29 -2.91 -0.02 5.09 15 9 C 0.38 21.99 7.37 133.62 0.99 22.97 15 10 N -0.60 -36.13 9.42 -197.90 -1.86 -38.00 15 11 C 0.19 10.23 12.97 180.86 2.35 12.58 15 12 N -0.43 -24.23 12.26 -61.44 -0.75 -24.98 15 13 N -0.42 -23.18 3.63 -185.23 -0.67 -23.85 15 14 C 0.12 5.60 6.14 38.29 0.24 5.84 15 15 C -0.12 -4.42 8.39 22.40 0.19 -4.23 15 16 C -0.10 -2.34 10.04 22.26 0.22 -2.12 15 17 C -0.09 -1.97 10.04 22.31 0.22 -1.75 15 18 C -0.13 -3.75 10.02 22.29 0.22 -3.53 15 19 C 0.05 1.95 7.30 22.52 0.16 2.11 15 20 F -0.15 -7.24 16.73 44.97 0.75 -6.49 15 21 H 0.29 13.86 8.29 -92.71 -0.77 13.10 15 22 H 0.22 9.62 8.06 -2.91 -0.02 9.60 15 23 H 0.13 4.84 7.37 -2.91 -0.02 4.82 15 24 H 0.17 2.73 8.06 -2.91 -0.02 2.71 15 25 H 0.18 2.01 8.06 -2.91 -0.02 1.99 15 26 H 0.16 3.50 8.06 -2.91 -0.02 3.47 15 Total: -1.00 -75.35 245.37 6.23 -69.12 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 1.22 Total: 17.01 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 5.26 Total: 10.02 kcal Atomic # 7 Polarization: -124.37 SS G_CDS: -3.03 Total: -127.40 kcal Atomic # 9 Polarization: -7.24 SS G_CDS: 0.75 Total: -6.49 kcal Atomic # 14 Polarization: 35.70 SS G_CDS: 2.03 Total: 37.73 kcal Total: -75.35 6.23 -69.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214342434.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.666 kcal (2) G-P(sol) polarization free energy of solvation -75.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds