Wall clock time and date at job start Mon Mar 30 2020 03:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 120.00007 * 2 1 4 4 H 1.48499 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47230 * 300.00178 * 3 2 1 6 6 H 1.48500 * 109.47240 * 60.00022 * 3 2 1 7 7 C 1.37875 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00006 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00209 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.46753 * 61.17575 * 9 7 2 11 11 C 1.54090 * 110.52087 * 183.95747 * 9 7 2 12 12 N 1.47095 * 103.77649 * 118.41949 * 11 9 7 13 13 C 1.39952 * 125.55348 * 180.21135 * 12 11 9 14 14 C 1.38859 * 120.07426 * 359.92391 * 13 12 11 15 15 C 1.38114 * 119.93073 * 179.67833 * 14 13 12 16 16 C 1.38285 * 120.06756 * 0.61386 * 15 14 13 17 17 C 1.38284 * 120.14032 * 359.67960 * 16 15 14 18 18 C 1.38116 * 120.06679 * 0.02562 * 17 16 15 19 19 C 1.34000 * 108.88311 * 0.35802 * 12 11 9 20 20 O 1.21513 * 123.07326 * 179.87649 * 19 12 11 21 21 O 1.33785 * 113.85191 * 359.60650 * 19 12 11 22 22 H 0.96993 * 119.99549 * 359.97438 * 1 2 3 23 23 H 1.09004 * 110.56281 * 237.20161 * 11 9 7 24 24 H 1.08997 * 110.56442 * 0.05339 * 11 9 7 25 25 H 1.08000 * 120.03731 * 359.97438 * 14 13 12 26 26 H 1.07992 * 119.96802 * 180.31532 * 15 14 13 27 27 H 1.07997 * 119.92884 * 179.70437 * 16 15 14 28 28 H 1.07991 * 119.96727 * 180.02562 * 17 16 15 29 29 H 1.08000 * 120.03112 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6345 -2.5825 -0.8967 11 6 2.2278 -3.6869 0.0975 12 7 1.8499 -4.3469 1.3566 13 6 2.4584 -5.4880 1.8917 14 6 3.5127 -6.0937 1.2211 15 6 4.1154 -7.2158 1.7552 16 6 3.6616 -7.7435 2.9502 17 6 2.6079 -7.1462 3.6174 18 6 2.0050 -6.0203 3.0914 19 6 0.8261 -3.6794 1.9059 20 8 0.3077 -4.0067 2.9550 21 8 0.4306 -2.6163 1.1965 22 1 -0.4849 0.8400 0.0004 23 1 2.0957 -4.3627 -0.7475 24 1 3.2573 -3.3327 0.1485 25 1 3.8642 -5.6851 0.2852 26 1 4.9387 -7.6844 1.2368 27 1 4.1314 -8.6238 3.3634 28 1 2.2560 -7.5604 4.5505 29 1 1.1823 -5.5541 3.6132 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219942991.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:05 Heat of formation + Delta-G solvation = -41.943998 kcal Electronic energy + Delta-G solvation = -15914.661406 eV Core-core repulsion = 13189.148571 eV Total energy + Delta-G solvation = -2725.512834 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.89596 -38.60273 -36.43316 -34.69661 -32.94766 -30.71188 -30.14594 -28.64116 -25.27314 -23.16072 -22.69100 -21.19700 -20.18774 -17.78588 -17.06716 -16.28233 -15.82828 -15.48545 -14.95674 -14.60558 -14.03600 -13.59263 -13.22007 -13.19694 -13.07865 -12.88646 -12.20701 -11.76428 -11.53001 -11.10380 -11.01862 -10.92642 -10.58205 -10.12206 -9.88475 -9.47095 -9.09171 -8.84900 -8.74663 -7.57699 -6.38817 -4.59484 1.56292 1.62361 3.07875 3.15055 3.22778 3.25198 3.52365 4.12855 4.17506 4.56180 4.94819 5.12616 5.16985 5.32125 5.34655 5.57348 5.65890 5.70909 5.84017 5.91445 6.14944 6.36004 6.59301 6.77694 6.83153 6.91379 6.96366 7.40570 7.50528 7.64668 8.29708 8.57659 8.77281 9.17156 10.67515 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.043983 B = 0.006739 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.454644 B = 4153.753463 C = 4467.740602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.081 3.919 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.196 3.804 10 H 0.081 0.919 11 C 0.069 3.931 12 N -0.577 5.577 13 C 0.202 3.798 14 C -0.166 4.166 15 C -0.093 4.093 16 C -0.162 4.162 17 C -0.091 4.091 18 C -0.164 4.164 19 C 0.636 3.364 20 O -0.543 6.543 21 O -0.299 6.299 22 H 0.270 0.730 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.124 0.876 26 H 0.122 0.878 27 H 0.117 0.883 28 H 0.122 0.878 29 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.999 -10.461 0.146 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.128 4.128 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.592 4.592 8 H 0.094 0.906 9 C 0.144 3.856 10 H 0.098 0.902 11 C -0.053 4.053 12 N -0.312 5.312 13 C 0.106 3.894 14 C -0.187 4.187 15 C -0.112 4.112 16 C -0.181 4.181 17 C -0.110 4.110 18 C -0.184 4.184 19 C 0.394 3.606 20 O -0.432 6.432 21 O -0.207 6.207 22 H 0.080 0.920 23 H 0.095 0.905 24 H 0.108 0.892 25 H 0.142 0.858 26 H 0.140 0.860 27 H 0.135 0.865 28 H 0.140 0.860 29 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.298 -10.211 0.643 12.015 hybrid contribution 0.567 0.873 -0.146 1.051 sum 6.865 -9.338 0.497 11.601 Atomic orbital electron populations 1.70014 1.06296 1.27883 1.44214 1.25159 0.94944 1.00135 0.92599 0.86321 0.80098 0.82330 0.78064 1.19258 1.20391 1.20426 1.21223 0.93209 0.89155 1.55578 0.90603 1.21651 0.87181 0.92961 0.83801 0.90180 1.23247 1.02420 0.95097 0.84569 1.45750 1.34010 1.26965 1.24510 1.17587 0.92834 0.85712 0.93224 1.20744 0.97917 0.98563 1.01527 1.20838 0.99115 0.95383 0.95818 1.21013 0.99058 1.01322 0.96713 1.21007 0.95603 0.95046 0.99346 1.21732 1.03233 0.97715 0.95758 1.19054 0.78457 0.79356 0.83698 1.90763 1.60862 1.69973 1.21602 1.87755 1.55970 1.39838 1.37127 0.91989 0.90499 0.89197 0.85778 0.86040 0.86487 0.86004 0.82501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.65 12.94 55.43 0.72 -22.93 15 2 C 0.08 2.13 5.42 -17.82 -0.10 2.03 15 3 Si 0.91 19.94 29.54 -169.99 -5.02 14.92 15 4 H -0.27 -5.75 7.11 56.52 0.40 -5.34 15 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 7 C -0.56 -14.10 8.83 -34.44 -0.30 -14.41 15 8 H 0.08 1.83 7.39 -52.48 -0.39 1.44 15 9 C 0.20 4.64 3.69 -27.31 -0.10 4.53 15 10 H 0.08 1.89 8.14 -51.93 -0.42 1.46 15 11 C 0.07 1.30 6.12 -3.15 -0.02 1.28 15 12 N -0.58 -11.87 3.16 -118.27 -0.37 -12.25 15 13 C 0.20 3.67 6.63 -83.69 -0.56 3.12 15 14 C -0.17 -2.48 9.49 -39.40 -0.37 -2.85 15 15 C -0.09 -1.18 10.04 -39.61 -0.40 -1.57 15 16 C -0.16 -2.03 10.04 -39.55 -0.40 -2.42 15 17 C -0.09 -1.30 10.04 -39.61 -0.40 -1.70 15 18 C -0.16 -2.92 9.31 -39.39 -0.37 -3.29 15 19 C 0.64 15.57 8.77 53.71 0.47 16.05 15 20 O -0.54 -13.99 14.75 -19.12 -0.28 -14.27 15 21 O -0.30 -7.97 10.34 -37.87 -0.39 -8.36 15 22 H 0.27 7.05 8.31 -40.82 -0.34 6.71 15 23 H 0.08 1.21 8.14 -51.93 -0.42 0.78 15 24 H 0.09 1.60 7.46 -51.93 -0.39 1.21 15 25 H 0.12 1.64 7.31 -52.49 -0.38 1.26 15 26 H 0.12 1.18 8.06 -52.49 -0.42 0.75 15 27 H 0.12 1.13 8.06 -52.49 -0.42 0.71 15 28 H 0.12 1.42 8.06 -52.49 -0.42 1.00 15 29 H 0.16 3.15 5.24 -52.49 -0.28 2.87 15 LS Contribution 256.59 15.07 3.87 3.87 Total: -1.00 -30.11 256.59 -6.70 -36.82 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -2.68 Total: 1.45 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -2.54 Total: 0.76 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.34 Total: -35.18 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.67 Total: -22.63 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.11 -6.70 -36.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219942991.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.128 kcal (2) G-P(sol) polarization free energy of solvation -30.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds