Wall clock time and date at job start Mon Mar 30 2020 03:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 120.00007 * 2 1 4 4 H 1.48499 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47230 * 300.00178 * 3 2 1 6 6 H 1.48500 * 109.47240 * 60.00022 * 3 2 1 7 7 C 1.37875 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00006 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00209 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.46753 * 61.17575 * 9 7 2 11 11 C 1.54090 * 110.52087 * 183.95747 * 9 7 2 12 12 N 1.47095 * 103.77649 * 118.41949 * 11 9 7 13 13 C 1.39952 * 125.55348 * 180.21135 * 12 11 9 14 14 C 1.38859 * 120.07426 * 359.92391 * 13 12 11 15 15 C 1.38114 * 119.93073 * 179.67833 * 14 13 12 16 16 C 1.38285 * 120.06756 * 0.61386 * 15 14 13 17 17 C 1.38284 * 120.14032 * 359.67960 * 16 15 14 18 18 C 1.38116 * 120.06679 * 0.02562 * 17 16 15 19 19 C 1.34000 * 108.88311 * 0.35802 * 12 11 9 20 20 O 1.21513 * 123.07326 * 179.87649 * 19 12 11 21 21 O 1.33785 * 113.85191 * 359.60650 * 19 12 11 22 22 H 0.96993 * 119.99549 * 359.97438 * 1 2 3 23 23 H 1.09004 * 110.56281 * 237.20161 * 11 9 7 24 24 H 1.08997 * 110.56442 * 0.05339 * 11 9 7 25 25 H 1.08000 * 120.03731 * 359.97438 * 14 13 12 26 26 H 1.07992 * 119.96802 * 180.31532 * 15 14 13 27 27 H 1.07997 * 119.92884 * 179.70437 * 16 15 14 28 28 H 1.07991 * 119.96727 * 180.02562 * 17 16 15 29 29 H 1.08000 * 120.03112 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6345 -2.5825 -0.8967 11 6 2.2278 -3.6869 0.0975 12 7 1.8499 -4.3469 1.3566 13 6 2.4584 -5.4880 1.8917 14 6 3.5127 -6.0937 1.2211 15 6 4.1154 -7.2158 1.7552 16 6 3.6616 -7.7435 2.9502 17 6 2.6079 -7.1462 3.6174 18 6 2.0050 -6.0203 3.0914 19 6 0.8261 -3.6794 1.9059 20 8 0.3077 -4.0067 2.9550 21 8 0.4306 -2.6163 1.1965 22 1 -0.4849 0.8400 0.0004 23 1 2.0957 -4.3627 -0.7475 24 1 3.2573 -3.3327 0.1485 25 1 3.8642 -5.6851 0.2852 26 1 4.9387 -7.6844 1.2368 27 1 4.1314 -8.6238 3.3634 28 1 2.2560 -7.5604 4.5505 29 1 1.1823 -5.5541 3.6132 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219942991.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:05 Heat of formation + Delta-G solvation = -60.536437 kcal Electronic energy + Delta-G solvation = -15915.467634 eV Core-core repulsion = 13189.148571 eV Total energy + Delta-G solvation = -2726.319063 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.59623 -39.89143 -38.30448 -36.25718 -34.91650 -31.89478 -31.61831 -30.21485 -27.03477 -24.56064 -24.27540 -22.60440 -21.73583 -19.46815 -18.76505 -17.81841 -17.34514 -17.23390 -16.65150 -16.12145 -15.42433 -14.97473 -14.90234 -14.71479 -14.60046 -14.29117 -13.79202 -13.32565 -12.88296 -12.86828 -12.71513 -12.36261 -12.10119 -11.84849 -11.38713 -11.17577 -10.96475 -10.78121 -9.87127 -8.92759 -8.35591 -6.62417 0.36041 0.48169 1.38840 1.41947 1.54422 1.56813 1.78918 2.31621 2.71569 2.94790 3.24577 3.64588 3.73795 4.09531 4.22910 4.31901 4.37206 4.46321 4.57403 4.67119 4.87296 5.05943 5.20158 5.48467 5.53034 5.58856 5.63357 5.65939 5.75179 6.14886 6.44100 6.70222 6.98709 7.18748 8.71921 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.043983 B = 0.006739 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.454644 B = 4153.753463 C = 4467.740602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.974 3.026 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.287 1.287 7 C -0.566 4.566 8 H 0.088 0.912 9 C 0.183 3.817 10 H 0.070 0.930 11 C 0.082 3.918 12 N -0.570 5.570 13 C 0.160 3.840 14 C -0.161 4.161 15 C -0.085 4.085 16 C -0.146 4.146 17 C -0.094 4.094 18 C -0.193 4.193 19 C 0.626 3.374 20 O -0.573 6.573 21 O -0.337 6.337 22 H 0.270 0.730 23 H 0.114 0.886 24 H 0.106 0.894 25 H 0.144 0.856 26 H 0.164 0.836 27 H 0.157 0.843 28 H 0.143 0.857 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.184 -12.317 -0.464 15.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.179 4.179 3 Si 0.797 3.203 4 H -0.177 1.177 5 H -0.195 1.195 6 H -0.213 1.213 7 C -0.602 4.602 8 H 0.106 0.894 9 C 0.131 3.869 10 H 0.088 0.912 11 C -0.039 4.039 12 N -0.306 5.306 13 C 0.067 3.933 14 C -0.182 4.182 15 C -0.103 4.103 16 C -0.165 4.165 17 C -0.112 4.112 18 C -0.213 4.213 19 C 0.383 3.617 20 O -0.464 6.464 21 O -0.246 6.246 22 H 0.079 0.921 23 H 0.132 0.868 24 H 0.124 0.876 25 H 0.161 0.839 26 H 0.181 0.819 27 H 0.175 0.825 28 H 0.161 0.839 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.531 -12.110 0.016 15.410 hybrid contribution -0.368 1.274 0.088 1.329 sum 9.163 -10.835 0.104 14.190 Atomic orbital electron populations 1.70147 1.08062 1.28660 1.46162 1.26099 0.95656 1.03928 0.92230 0.85275 0.79381 0.77857 0.77772 1.17725 1.19455 1.21306 1.21673 0.93957 0.90041 1.54555 0.89408 1.21763 0.87835 0.94700 0.82639 0.91208 1.23231 1.01580 0.93935 0.85171 1.45675 1.32911 1.27409 1.24561 1.17965 0.94930 0.85950 0.94441 1.21052 0.96439 0.98829 1.01886 1.21366 0.99267 0.94041 0.95628 1.21514 0.97338 1.01565 0.96032 1.21285 0.95900 0.93799 1.00249 1.21636 1.03578 0.99627 0.96462 1.19223 0.79490 0.79406 0.83570 1.90735 1.62189 1.70691 1.22784 1.87680 1.57338 1.41246 1.38286 0.92076 0.86784 0.87617 0.83854 0.81878 0.82516 0.83923 0.85966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.43 12.94 21.45 0.28 -51.15 15 2 C 0.03 1.36 5.42 84.65 0.46 1.82 15 3 Si 0.97 41.09 29.54 68.60 2.03 43.11 15 4 H -0.25 -9.99 7.11 99.48 0.71 -9.28 15 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 15 6 H -0.29 -12.39 7.11 99.48 0.71 -11.68 15 7 C -0.57 -28.88 8.83 25.60 0.23 -28.65 15 8 H 0.09 4.14 7.39 -2.91 -0.02 4.12 15 9 C 0.18 8.80 3.69 30.22 0.11 8.91 15 10 H 0.07 3.41 8.14 -2.39 -0.02 3.39 15 11 C 0.08 3.01 6.12 86.63 0.53 3.54 15 12 N -0.57 -23.55 3.16 -759.80 -2.40 -25.95 15 13 C 0.16 5.69 6.63 38.14 0.25 5.94 15 14 C -0.16 -4.26 9.49 22.39 0.21 -4.04 15 15 C -0.08 -1.71 10.04 22.25 0.22 -1.48 15 16 C -0.15 -2.95 10.04 22.29 0.22 -2.73 15 17 C -0.09 -2.46 10.04 22.25 0.22 -2.24 15 18 C -0.19 -6.90 9.31 22.39 0.21 -6.70 15 19 C 0.63 32.02 8.77 129.91 1.14 33.16 15 20 O -0.57 -31.38 14.75 19.64 0.29 -31.09 15 21 O -0.34 -18.81 10.34 -47.44 -0.49 -19.30 15 22 H 0.27 14.61 8.31 -92.71 -0.77 13.84 15 23 H 0.11 3.30 8.14 -2.38 -0.02 3.28 15 24 H 0.11 3.52 7.46 -2.39 -0.02 3.50 15 25 H 0.14 3.16 7.31 -2.91 -0.02 3.14 15 26 H 0.16 2.00 8.06 -2.91 -0.02 1.98 15 27 H 0.16 2.00 8.06 -2.91 -0.02 1.98 15 28 H 0.14 3.02 8.06 -2.92 -0.02 2.99 15 29 H 0.12 5.23 5.24 -2.91 -0.02 5.21 15 Total: -1.00 -69.23 256.59 4.68 -64.55 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 1.17 Total: 12.30 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 3.81 Total: 7.53 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -2.12 Total: -77.11 kcal Atomic # 8 Polarization: -50.19 SS G_CDS: -0.20 Total: -50.39 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.11 kcal Total: -69.23 4.68 -64.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219942991.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.016 kcal (2) G-P(sol) polarization free energy of solvation -69.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds