Wall clock time and date at job start Mon Mar 30 2020 03:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.45977 * 298.82589 * 9 7 2 11 11 C 1.54082 * 110.52156 * 176.04215 * 9 7 2 12 12 N 1.47100 * 103.78002 * 241.36855 * 11 9 7 13 13 C 1.39945 * 125.56135 * 180.02562 * 12 11 9 14 14 C 1.38868 * 120.06906 * 359.70311 * 13 12 11 15 15 C 1.38119 * 119.92736 * 179.77064 * 14 13 12 16 16 C 1.38282 * 120.06985 * 0.48547 * 15 14 13 17 17 C 1.38278 * 120.13811 * 359.77242 * 16 15 14 18 18 C 1.38114 * 120.07064 * 359.97438 * 17 16 15 19 19 C 1.34002 * 108.87827 * 0.02562 * 12 11 9 20 20 O 1.21509 * 123.07574 * 180.02562 * 19 12 11 21 21 O 1.33785 * 113.85545 * 0.02562 * 19 12 11 22 22 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 23 23 H 1.08992 * 110.56764 * 359.94263 * 11 9 7 24 24 H 1.09004 * 110.56434 * 122.79885 * 11 9 7 25 25 H 1.07998 * 120.03634 * 359.97438 * 14 13 12 26 26 H 1.08000 * 119.96221 * 180.22963 * 15 14 13 27 27 H 1.07997 * 119.92627 * 179.74684 * 16 15 14 28 28 H 1.08006 * 119.96010 * 179.97438 * 17 16 15 29 29 H 1.08008 * 120.03160 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6338 -2.5828 0.8950 11 6 2.2279 -3.6867 -0.0984 12 7 1.8476 -4.3493 -1.3555 13 6 2.4522 -5.4939 -1.8874 14 6 3.5098 -6.0966 -1.2191 15 6 4.1012 -7.2289 -1.7444 16 6 3.6477 -7.7566 -2.9394 17 6 2.5983 -7.1556 -3.6100 18 6 1.9993 -6.0262 -3.0873 19 6 0.8279 -3.6782 -1.9082 20 8 0.3098 -4.0054 -2.9574 21 8 0.4325 -2.6149 -1.1991 22 1 -0.4850 -0.8401 -0.0004 23 1 3.2574 -3.3325 -0.1486 24 1 2.0952 -4.3630 0.7461 25 1 3.8673 -5.6824 -0.2881 26 1 4.9213 -7.7002 -1.2232 27 1 4.1145 -8.6396 -3.3501 28 1 2.2467 -7.5699 -4.5434 29 1 1.1794 -5.5575 -3.6114 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219943011.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:08 Heat of formation + Delta-G solvation = -47.199307 kcal Electronic energy + Delta-G solvation = -15959.101726 eV Core-core repulsion = 13233.361005 eV Total energy + Delta-G solvation = -2725.740722 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.05456 -38.71056 -36.62106 -34.85665 -33.12293 -30.78127 -30.20482 -28.50726 -24.91344 -23.25621 -22.87536 -21.39557 -20.29362 -18.06940 -17.25597 -16.42905 -15.96653 -15.86004 -14.90422 -14.18253 -13.94802 -13.76216 -13.54930 -13.33023 -13.23177 -12.92908 -12.17109 -12.11343 -11.60534 -11.05109 -11.00390 -10.92080 -10.24528 -10.18877 -10.03474 -9.61522 -8.88419 -8.81411 -8.74401 -7.67107 -6.74449 -4.62346 1.48978 1.55484 2.96484 3.28148 3.32154 3.39455 3.50053 4.06709 4.26475 4.41900 4.87610 5.06497 5.10876 5.20691 5.27923 5.49563 5.54317 5.61964 5.74303 5.82893 6.05354 6.27445 6.52642 6.58033 6.71336 6.78190 6.84835 7.31549 7.45449 7.94464 8.18593 8.42693 8.64339 9.22298 10.65226 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.043980 B = 0.006764 C = 0.006290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.494457 B = 4138.354725 C = 4450.769552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.037 3.963 3 Si 1.075 2.925 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.625 4.625 8 H 0.069 0.931 9 C 0.176 3.824 10 H 0.075 0.925 11 C 0.077 3.923 12 N -0.576 5.576 13 C 0.199 3.801 14 C -0.165 4.165 15 C -0.093 4.093 16 C -0.160 4.160 17 C -0.091 4.091 18 C -0.163 4.163 19 C 0.642 3.358 20 O -0.539 6.539 21 O -0.323 6.323 22 H 0.281 0.719 23 H 0.092 0.908 24 H 0.077 0.923 25 H 0.124 0.876 26 H 0.123 0.877 27 H 0.118 0.882 28 H 0.123 0.877 29 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.506 -11.100 -0.228 13.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.174 4.174 3 Si 0.901 3.099 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.661 4.661 8 H 0.087 0.913 9 C 0.124 3.876 10 H 0.092 0.908 11 C -0.045 4.045 12 N -0.311 5.311 13 C 0.105 3.895 14 C -0.186 4.186 15 C -0.111 4.111 16 C -0.179 4.179 17 C -0.110 4.110 18 C -0.184 4.184 19 C 0.400 3.600 20 O -0.427 6.427 21 O -0.232 6.232 22 H 0.092 0.908 23 H 0.110 0.890 24 H 0.095 0.905 25 H 0.142 0.858 26 H 0.141 0.859 27 H 0.136 0.864 28 H 0.141 0.859 29 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.765 -9.343 -0.729 11.558 hybrid contribution 0.395 -1.752 0.147 1.802 sum 7.160 -11.095 -0.582 13.218 Atomic orbital electron populations 1.70729 1.07017 1.31967 1.40286 1.26098 0.96352 1.03308 0.91644 0.83463 0.74998 0.74541 0.76939 1.20262 1.20844 1.20962 1.22089 0.94476 0.90179 1.59370 0.91278 1.21842 0.87784 0.94554 0.83441 0.90781 1.23101 1.02260 0.94539 0.84627 1.45674 1.34212 1.26647 1.24537 1.17577 0.92964 0.85635 0.93369 1.20747 0.97790 0.98431 1.01653 1.20850 0.99184 0.95227 0.95856 1.21030 0.98997 1.01304 0.96567 1.21015 0.95604 0.94955 0.99383 1.21722 1.03259 0.97727 0.95645 1.18859 0.78537 0.79065 0.83539 1.90777 1.60679 1.69834 1.21455 1.87668 1.56984 1.40955 1.37565 0.90797 0.88989 0.90480 0.85781 0.85940 0.86372 0.85905 0.82528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.06 13.56 55.43 0.75 -24.31 15 2 C 0.04 1.00 5.42 -17.82 -0.10 0.90 15 3 Si 1.07 23.38 29.90 -169.99 -5.08 18.30 15 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 15 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 7 C -0.63 -16.12 8.83 -34.44 -0.30 -16.42 15 8 H 0.07 1.71 7.39 -52.48 -0.39 1.32 15 9 C 0.18 4.13 3.23 -27.31 -0.09 4.04 15 10 H 0.07 1.71 8.06 -51.93 -0.42 1.29 15 11 C 0.08 1.46 6.12 -3.15 -0.02 1.44 15 12 N -0.58 -11.80 3.16 -118.27 -0.37 -12.17 15 13 C 0.20 3.61 6.63 -83.69 -0.56 3.05 15 14 C -0.17 -2.45 9.49 -39.39 -0.37 -2.82 15 15 C -0.09 -1.16 10.04 -39.61 -0.40 -1.55 15 16 C -0.16 -1.97 10.04 -39.55 -0.40 -2.37 15 17 C -0.09 -1.27 10.04 -39.61 -0.40 -1.67 15 18 C -0.16 -2.88 9.31 -39.40 -0.37 -3.25 15 19 C 0.64 15.59 8.77 53.71 0.47 16.06 15 20 O -0.54 -13.75 14.75 -19.11 -0.28 -14.03 15 21 O -0.32 -8.45 9.66 -37.87 -0.37 -8.82 15 22 H 0.28 8.18 6.59 -40.82 -0.27 7.91 15 23 H 0.09 1.67 7.46 -51.93 -0.39 1.28 15 24 H 0.08 1.22 8.14 -51.93 -0.42 0.79 15 25 H 0.12 1.64 7.31 -52.49 -0.38 1.25 15 26 H 0.12 1.16 8.06 -52.49 -0.42 0.74 15 27 H 0.12 1.12 8.06 -52.49 -0.42 0.69 15 28 H 0.12 1.41 8.06 -52.48 -0.42 0.99 15 29 H 0.16 3.11 5.24 -52.48 -0.28 2.84 15 LS Contribution 254.63 15.07 3.84 3.84 Total: -1.00 -30.63 254.63 -6.65 -37.28 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -2.61 Total: 2.48 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -2.53 Total: -2.57 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.38 Total: -36.49 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.65 Total: -22.84 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.08 Total: 18.30 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.63 -6.65 -37.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219943011.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.918 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds