Wall clock time and date at job start Mon Mar 30 2020 03:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31361 * 1 3 3 Si 1.86797 * 119.99741 * 2 1 4 4 H 1.48507 * 109.47034 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47314 * 299.99776 * 3 2 1 6 6 H 1.48505 * 109.47226 * 59.99924 * 3 2 1 7 7 C 1.38917 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99708 * 197.16743 * 7 2 1 9 9 N 1.37492 * 120.00189 * 17.16261 * 7 2 1 10 10 C 1.38432 * 123.81924 * 27.56816 * 9 7 2 11 11 O 1.21215 * 128.47124 * 17.20705 * 10 9 7 12 12 C 1.46682 * 104.43082 * 197.41781 * 10 9 7 13 13 H 1.08998 * 99.18316 * 62.16864 * 12 10 9 14 14 C 1.47751 * 148.57069 * 188.79269 * 12 10 9 15 15 H 1.08997 * 115.85816 * 313.05945 * 14 12 10 16 16 C 1.52850 * 112.82186 * 89.78501 * 14 12 10 17 17 C 1.32081 * 111.01590 * 65.66158 * 16 14 12 18 18 C 1.55671 * 106.61211 * 355.85364 * 17 16 14 19 19 H 1.09000 * 118.21110 * 165.01402 * 18 17 16 20 20 C 1.57841 * 96.63756 * 38.95963 * 18 17 16 21 21 C 1.53373 * 97.43668 * 291.58758 * 18 17 16 22 22 H 1.08997 * 110.66244 * 329.62314 * 21 18 17 23 23 C 1.37581 * 123.82328 * 207.53634 * 9 7 2 24 24 O 1.21220 * 127.57392 * 15.31088 * 23 9 7 25 25 H 0.97002 * 120.00003 * 0.02562 * 1 2 3 26 26 H 1.07996 * 124.49213 * 245.63483 * 16 14 12 27 27 H 1.08003 * 126.69869 * 175.86088 * 17 16 14 28 28 H 1.08997 * 112.48514 * 189.34285 * 20 18 17 29 29 H 1.08999 * 112.48078 * 61.59308 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 3.7076 1.3464 0.0006 5 1 1.8888 2.3965 -1.2125 6 1 1.8887 2.3965 1.2125 7 6 2.0082 -1.2031 0.0005 8 1 3.0522 -1.2237 0.2766 9 7 1.3666 -2.3674 -0.3503 10 6 0.2799 -2.4206 -1.2062 11 8 -0.1061 -1.5786 -1.9880 12 6 -0.3184 -3.7363 -0.9560 13 1 -0.5862 -3.6090 0.0929 14 6 -1.3017 -4.7685 -1.3441 15 1 -2.3112 -4.4110 -1.5472 16 6 -0.7393 -5.7759 -2.3467 17 6 0.2281 -6.4937 -1.8050 18 6 0.4586 -5.9228 -0.3752 19 1 1.0347 -6.5202 0.3315 20 6 -1.0605 -5.6607 -0.0363 21 6 1.0437 -4.5684 -0.7941 22 1 1.5768 -4.6560 -1.7408 23 6 1.7325 -3.6117 0.1090 24 8 2.4577 -3.8702 1.0452 25 1 -0.4850 0.8401 -0.0004 26 1 -1.0870 -5.8864 -3.3632 27 1 0.7563 -7.3162 -2.2643 28 1 -1.1901 -5.0930 0.8851 29 1 -1.6526 -6.5758 -0.0411 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225143850.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:53 Heat of formation + Delta-G solvation = 34.765969 kcal Electronic energy + Delta-G solvation = -16672.824241 eV Core-core repulsion = 13950.637800 eV Total energy + Delta-G solvation = -2722.186441 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.02626 -38.53895 -36.95311 -34.40669 -32.77654 -30.30080 -29.04787 -27.69923 -24.77842 -23.84562 -21.07810 -20.28477 -18.50791 -17.95249 -17.19969 -16.83696 -15.92665 -14.99121 -14.75422 -14.17826 -13.89303 -13.49008 -13.18001 -12.42717 -12.23360 -11.79952 -11.76979 -11.31635 -11.23419 -11.15983 -11.08177 -10.96783 -10.71380 -10.37196 -9.74857 -9.57563 -8.93071 -8.70790 -8.68629 -8.00293 -6.49293 -4.17074 2.30656 2.80232 3.15794 3.23961 3.29140 3.68494 3.90984 4.18528 4.39431 4.45834 4.82729 4.94672 5.08222 5.11862 5.26809 5.47575 5.62696 5.69356 5.85231 6.00219 6.04468 6.12262 6.18544 6.23318 6.40506 6.51889 7.03012 7.35523 7.73692 8.00928 8.65808 8.79360 9.09300 9.69472 10.60880 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.042829 B = 0.009275 C = 0.008306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.601265 B = 3018.072943 C = 3370.278442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.052 3.948 3 Si 0.931 3.069 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.279 1.279 7 C -0.352 4.352 8 H 0.102 0.898 9 N -0.434 5.434 10 C 0.559 3.441 11 O -0.465 6.465 12 C -0.160 4.160 13 H 0.083 0.917 14 C -0.022 4.022 15 H 0.110 0.890 16 C -0.159 4.159 17 C -0.168 4.168 18 C -0.051 4.051 19 H 0.112 0.888 20 C -0.123 4.123 21 C -0.143 4.143 22 H 0.110 0.890 23 C 0.504 3.496 24 O -0.515 6.515 25 H 0.275 0.725 26 H 0.123 0.877 27 H 0.134 0.866 28 H 0.075 0.925 29 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.942 -10.213 -2.881 11.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.158 4.158 3 Si 0.756 3.244 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.477 4.477 8 H 0.119 0.881 9 N -0.168 5.168 10 C 0.349 3.651 11 O -0.336 6.336 12 C -0.182 4.182 13 H 0.101 0.899 14 C -0.041 4.041 15 H 0.128 0.872 16 C -0.177 4.177 17 C -0.186 4.186 18 C -0.069 4.069 19 H 0.130 0.870 20 C -0.160 4.160 21 C -0.165 4.165 22 H 0.128 0.872 23 C 0.295 3.705 24 O -0.392 6.392 25 H 0.085 0.915 26 H 0.141 0.859 27 H 0.152 0.848 28 H 0.094 0.906 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.916 -9.686 -2.773 10.488 hybrid contribution 0.394 0.947 0.038 1.027 sum -2.522 -8.739 -2.735 9.497 Atomic orbital electron populations 1.69801 1.06486 1.28715 1.42232 1.25366 0.95320 1.00324 0.94833 0.85826 0.79803 0.80777 0.77959 1.18974 1.20177 1.20489 1.19565 0.95525 0.82957 1.49687 0.88067 1.44377 1.28590 1.07135 1.36650 1.19034 0.81304 0.85623 0.79148 1.90519 1.63465 1.46639 1.32961 1.22215 0.95587 0.95073 1.05344 0.89899 1.21116 0.97888 0.91074 0.93984 0.87151 1.23887 0.98290 0.96615 0.98934 1.24832 0.97794 0.98962 0.96967 1.22734 0.95416 0.93976 0.94813 0.87013 1.25102 0.94518 0.99605 0.96797 1.23625 0.96932 0.95031 1.00874 0.87243 1.20362 0.82382 0.84022 0.83702 1.90550 1.38237 1.82103 1.28347 0.91464 0.85883 0.84839 0.90609 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.25 11.06 55.49 0.61 -23.63 15 2 C 0.05 1.44 4.97 -17.50 -0.09 1.35 15 3 Si 0.93 21.32 29.58 -169.99 -5.03 16.29 15 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 6 H -0.28 -6.22 7.11 56.52 0.40 -5.81 15 7 C -0.35 -10.02 9.76 -14.76 -0.14 -10.16 15 8 H 0.10 2.84 7.89 -52.48 -0.41 2.43 15 9 N -0.43 -11.58 2.85 -61.09 -0.17 -11.76 15 10 C 0.56 14.24 6.46 -11.16 -0.07 14.17 15 11 O -0.47 -13.22 16.01 5.61 0.09 -13.13 15 12 C -0.16 -3.18 3.86 -91.96 -0.36 -3.54 15 13 H 0.08 1.75 5.34 -51.93 -0.28 1.47 15 14 C -0.02 -0.33 5.19 -89.20 -0.46 -0.79 15 15 H 0.11 1.51 8.14 -51.93 -0.42 1.09 15 16 C -0.16 -2.07 10.05 -35.16 -0.35 -2.42 15 17 C -0.17 -2.08 9.62 -33.66 -0.32 -2.41 15 18 C -0.05 -0.74 5.53 -86.35 -0.48 -1.22 15 19 H 0.11 1.52 8.14 -51.93 -0.42 1.10 15 20 C -0.12 -1.67 6.50 -20.04 -0.13 -1.80 15 21 C -0.14 -2.69 2.83 -88.41 -0.25 -2.94 15 22 H 0.11 1.99 7.33 -51.93 -0.38 1.60 15 23 C 0.50 12.09 7.45 -10.74 -0.08 12.01 15 24 O -0.52 -13.46 17.89 5.61 0.10 -13.36 15 25 H 0.28 7.47 8.31 -40.82 -0.34 7.13 15 26 H 0.12 1.37 8.06 -52.49 -0.42 0.95 15 27 H 0.13 1.34 8.06 -52.48 -0.42 0.92 15 28 H 0.08 1.09 7.16 -51.93 -0.37 0.72 15 29 H 0.08 0.92 8.13 -51.93 -0.42 0.50 15 LS Contribution 247.50 15.07 3.73 3.73 Total: -1.00 -32.82 247.50 -6.10 -38.91 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -2.69 Total: 0.69 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -2.74 Total: 2.26 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.44 Total: -35.39 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: 0.19 Total: -26.49 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -32.82 -6.10 -38.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225143850.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.680 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds