Wall clock time and date at job start Mon Mar 30 2020 03:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31361 * 1 3 3 Si 1.86797 * 119.99741 * 2 1 4 4 H 1.48507 * 109.47034 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47314 * 299.99776 * 3 2 1 6 6 H 1.48505 * 109.47226 * 59.99924 * 3 2 1 7 7 C 1.38917 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99708 * 197.16743 * 7 2 1 9 9 N 1.37492 * 120.00189 * 17.16261 * 7 2 1 10 10 C 1.38432 * 123.81924 * 27.56816 * 9 7 2 11 11 O 1.21215 * 128.47124 * 17.20705 * 10 9 7 12 12 C 1.46682 * 104.43082 * 197.41781 * 10 9 7 13 13 H 1.08998 * 99.18316 * 62.16864 * 12 10 9 14 14 C 1.47751 * 148.57069 * 188.79269 * 12 10 9 15 15 H 1.08997 * 115.85816 * 313.05945 * 14 12 10 16 16 C 1.52850 * 112.82186 * 89.78501 * 14 12 10 17 17 C 1.32081 * 111.01590 * 65.66158 * 16 14 12 18 18 C 1.55671 * 106.61211 * 355.85364 * 17 16 14 19 19 H 1.09000 * 118.21110 * 165.01402 * 18 17 16 20 20 C 1.57841 * 96.63756 * 38.95963 * 18 17 16 21 21 C 1.53373 * 97.43668 * 291.58758 * 18 17 16 22 22 H 1.08997 * 110.66244 * 329.62314 * 21 18 17 23 23 C 1.37581 * 123.82328 * 207.53634 * 9 7 2 24 24 O 1.21220 * 127.57392 * 15.31088 * 23 9 7 25 25 H 0.97002 * 120.00003 * 0.02562 * 1 2 3 26 26 H 1.07996 * 124.49213 * 245.63483 * 16 14 12 27 27 H 1.08003 * 126.69869 * 175.86088 * 17 16 14 28 28 H 1.08997 * 112.48514 * 189.34285 * 20 18 17 29 29 H 1.08999 * 112.48078 * 61.59308 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 3.7076 1.3464 0.0006 5 1 1.8888 2.3965 -1.2125 6 1 1.8887 2.3965 1.2125 7 6 2.0082 -1.2031 0.0005 8 1 3.0522 -1.2237 0.2766 9 7 1.3666 -2.3674 -0.3503 10 6 0.2799 -2.4206 -1.2062 11 8 -0.1061 -1.5786 -1.9880 12 6 -0.3184 -3.7363 -0.9560 13 1 -0.5862 -3.6090 0.0929 14 6 -1.3017 -4.7685 -1.3441 15 1 -2.3112 -4.4110 -1.5472 16 6 -0.7393 -5.7759 -2.3467 17 6 0.2281 -6.4937 -1.8050 18 6 0.4586 -5.9228 -0.3752 19 1 1.0347 -6.5202 0.3315 20 6 -1.0605 -5.6607 -0.0363 21 6 1.0437 -4.5684 -0.7941 22 1 1.5768 -4.6560 -1.7408 23 6 1.7325 -3.6117 0.1090 24 8 2.4577 -3.8702 1.0452 25 1 -0.4850 0.8401 -0.0004 26 1 -1.0870 -5.8864 -3.3632 27 1 0.7563 -7.3162 -2.2643 28 1 -1.1901 -5.0930 0.8851 29 1 -1.6526 -6.5758 -0.0411 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225143850.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:52 Heat of formation + Delta-G solvation = 12.910276 kcal Electronic energy + Delta-G solvation = -16673.771975 eV Core-core repulsion = 13950.637800 eV Total energy + Delta-G solvation = -2723.134175 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.57712 -40.17372 -38.99352 -36.46068 -34.75242 -31.88857 -30.42287 -28.98876 -26.68042 -25.57317 -22.59957 -21.90351 -20.09128 -19.29332 -19.00530 -18.57289 -17.36811 -16.91487 -16.49708 -16.03611 -15.73148 -15.32795 -14.93852 -14.03576 -13.78050 -13.52178 -13.25762 -13.01115 -12.89794 -12.51930 -12.43018 -12.37973 -12.27568 -12.10233 -11.60092 -11.12535 -10.73142 -10.60325 -10.10006 -9.82300 -8.60478 -6.37343 0.85421 1.29982 1.30292 1.35415 1.49708 1.84818 2.07008 2.44111 2.69441 2.89491 3.17479 3.56741 3.68786 3.84819 3.94741 4.09035 4.26079 4.31716 4.63285 4.73848 4.76784 4.92305 5.01088 5.02195 5.16186 5.26676 5.50582 5.67901 5.96822 6.05566 6.56855 6.81830 6.98981 7.64681 8.50126 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.042829 B = 0.009275 C = 0.008306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.601265 B = 3018.072943 C = 3370.278442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.005 3.995 3 Si 1.001 2.999 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.388 4.388 8 H 0.092 0.908 9 N -0.459 5.459 10 C 0.547 3.453 11 O -0.507 6.507 12 C -0.148 4.148 13 H 0.065 0.935 14 C -0.028 4.028 15 H 0.123 0.877 16 C -0.162 4.162 17 C -0.149 4.149 18 C -0.055 4.055 19 H 0.126 0.874 20 C -0.113 4.113 21 C -0.130 4.130 22 H 0.121 0.879 23 C 0.498 3.502 24 O -0.543 6.543 25 H 0.278 0.722 26 H 0.148 0.852 27 H 0.168 0.832 28 H 0.059 0.941 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.299 -12.167 -3.673 13.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.202 4.202 3 Si 0.822 3.178 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.191 1.191 7 C -0.514 4.514 8 H 0.110 0.890 9 N -0.193 5.193 10 C 0.340 3.660 11 O -0.381 6.381 12 C -0.169 4.169 13 H 0.083 0.917 14 C -0.047 4.047 15 H 0.141 0.859 16 C -0.180 4.180 17 C -0.166 4.166 18 C -0.073 4.073 19 H 0.144 0.856 20 C -0.150 4.150 21 C -0.151 4.151 22 H 0.139 0.861 23 C 0.292 3.708 24 O -0.422 6.422 25 H 0.087 0.913 26 H 0.165 0.835 27 H 0.185 0.815 28 H 0.078 0.922 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.274 -11.676 -3.553 12.636 hybrid contribution 0.531 1.532 0.331 1.655 sum -2.743 -10.143 -3.222 10.991 Atomic orbital electron populations 1.69885 1.07978 1.29662 1.43163 1.26399 0.96205 1.03773 0.93813 0.84800 0.78749 0.75925 0.78342 1.18023 1.19859 1.19060 1.19796 0.95712 0.84696 1.51163 0.89017 1.44787 1.29495 1.07701 1.37329 1.19892 0.80861 0.87319 0.77952 1.90465 1.64384 1.48585 1.34655 1.22264 0.97614 0.92897 1.04162 0.91742 1.21353 0.97304 0.89767 0.96234 0.85860 1.23989 0.98671 0.95760 0.99591 1.24975 0.97369 0.99420 0.94884 1.22897 0.95711 0.91484 0.97226 0.85596 1.25100 0.94228 1.00514 0.95205 1.23733 0.95281 0.96426 0.99669 0.86120 1.21257 0.81409 0.84504 0.83602 1.90512 1.39347 1.82612 1.29752 0.91275 0.83465 0.81471 0.92187 0.86120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -52.14 11.06 21.65 0.24 -51.90 15 2 C 0.00 0.26 4.97 84.93 0.42 0.68 15 3 Si 1.00 44.62 29.58 68.60 2.03 46.65 15 4 H -0.26 -10.92 7.11 99.48 0.71 -10.22 15 5 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 15 7 C -0.39 -23.01 9.76 83.97 0.82 -22.19 15 8 H 0.09 5.40 7.89 -2.91 -0.02 5.38 15 9 N -0.46 -25.40 2.85 -580.24 -1.66 -27.06 15 10 C 0.55 28.71 6.46 85.86 0.55 29.27 15 11 O -0.51 -29.86 16.01 -2.83 -0.05 -29.91 15 12 C -0.15 -5.82 3.86 -11.66 -0.05 -5.86 15 13 H 0.06 2.77 5.34 -2.39 -0.01 2.76 15 14 C -0.03 -0.77 5.19 -9.87 -0.05 -0.82 15 15 H 0.12 3.08 8.14 -2.39 -0.02 3.06 15 16 C -0.16 -3.50 10.05 25.43 0.26 -3.24 15 17 C -0.15 -2.96 9.62 26.40 0.25 -2.71 15 18 C -0.05 -1.42 5.53 -8.03 -0.04 -1.46 15 19 H 0.13 2.99 8.14 -2.39 -0.02 2.97 15 20 C -0.11 -2.72 6.50 34.93 0.23 -2.50 15 21 C -0.13 -4.74 2.83 -9.36 -0.03 -4.76 15 22 H 0.12 4.16 7.33 -2.39 -0.02 4.15 15 23 C 0.50 24.43 7.45 86.53 0.64 25.07 15 24 O -0.54 -29.04 17.89 -2.84 -0.05 -29.09 15 25 H 0.28 15.53 8.31 -92.71 -0.77 14.76 15 26 H 0.15 2.54 8.06 -2.91 -0.02 2.52 15 27 H 0.17 2.30 8.06 -2.91 -0.02 2.28 15 28 H 0.06 1.64 7.16 -2.39 -0.02 1.63 15 29 H 0.12 2.07 8.13 -2.39 -0.02 2.05 15 Total: -1.00 -74.94 247.50 4.70 -70.24 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 1.18 Total: 9.59 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 3.01 Total: 11.48 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -1.42 Total: -78.97 kcal Atomic # 8 Polarization: -58.90 SS G_CDS: -0.10 Total: -59.00 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -74.94 4.70 -70.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225143850.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.146 kcal (2) G-P(sol) polarization free energy of solvation -74.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds