Wall clock time and date at job start Mon Mar 30 2020 02:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99874 * 2 1 4 4 H 1.48502 * 109.47269 * 270.00643 * 3 2 1 5 5 H 1.48500 * 109.47389 * 30.00717 * 3 2 1 6 6 H 1.48500 * 109.47005 * 150.00684 * 3 2 1 7 7 C 1.37875 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00063 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00032 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47461 * 300.00588 * 9 7 2 11 11 N 1.46904 * 109.47289 * 60.00410 * 9 7 2 12 12 C 1.50696 * 109.47437 * 180.02562 * 9 7 2 13 13 C 1.38396 * 119.89347 * 280.28622 * 12 9 7 14 14 C 1.37941 * 120.32405 * 180.26636 * 13 12 9 15 15 C 1.39620 * 119.79417 * 359.71552 * 14 13 12 16 16 C 1.39747 * 119.41461 * 359.97438 * 15 14 13 17 17 C 1.37548 * 120.30218 * 0.02562 * 16 15 14 18 18 C 1.50793 * 106.32754 * 180.02562 * 16 15 14 19 19 O 1.45392 * 106.41803 * 0.02562 * 18 16 15 20 20 C 1.34349 * 109.00380 * 359.97438 * 19 18 16 21 21 O 1.21474 * 124.89621 * 180.02562 * 20 19 18 22 22 H 0.96996 * 119.99947 * 359.97438 * 1 2 3 23 23 H 1.00897 * 110.99834 * 59.99765 * 11 9 7 24 24 H 1.00900 * 111.00084 * 183.95571 * 11 9 7 25 25 H 1.07997 * 119.83768 * 359.97438 * 13 12 9 26 26 H 1.08005 * 120.10810 * 179.73800 * 14 13 12 27 27 H 1.08002 * 120.02227 * 179.97438 * 17 16 15 28 28 H 1.09001 * 110.06646 * 119.23950 * 18 16 15 29 29 H 1.09006 * 110.07072 * 240.76042 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 7 0.4061 -2.5768 -1.1997 12 6 2.2303 -3.6446 -0.0005 13 6 2.8413 -4.0297 -1.1811 14 6 3.7349 -5.0805 -1.1923 15 6 4.0281 -5.7545 -0.0052 16 6 3.4104 -5.3533 1.1824 17 6 2.5209 -4.3041 1.1820 18 6 3.9331 -6.2674 2.2619 19 8 4.8599 -7.1809 1.6136 20 6 4.9180 -6.8886 0.3036 21 8 5.6047 -7.4744 -0.5094 22 1 -0.4850 0.8400 0.0004 23 1 0.9638 -2.5252 -2.0390 24 1 -0.1579 -3.4134 -1.1912 25 1 2.6139 -3.5080 -2.0989 26 1 4.2065 -5.3808 -2.1163 27 1 2.0458 -3.9981 2.1024 28 1 4.4524 -5.6869 3.0244 29 1 3.1107 -6.8245 2.7108 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238602406.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:16 Heat of formation + Delta-G solvation = -46.239177 kcal Electronic energy + Delta-G solvation = -15609.359122 eV Core-core repulsion = 12883.660035 eV Total energy + Delta-G solvation = -2725.699087 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.36192 -38.43984 -37.23143 -34.69546 -31.97126 -31.31220 -29.98242 -27.18136 -26.20080 -23.92165 -22.60100 -20.65352 -20.21741 -17.31485 -16.93151 -16.70056 -16.40399 -15.44844 -14.83573 -14.37509 -14.08137 -14.03199 -13.62721 -13.42547 -12.96903 -12.75777 -12.27543 -11.97405 -11.48654 -10.99814 -10.92670 -10.78452 -10.72474 -10.17310 -9.98711 -9.46626 -8.70424 -8.58192 -8.37191 -7.30683 -6.03358 -4.20178 0.86728 1.51360 2.69392 3.11769 3.25271 3.32850 3.35462 3.91080 3.96670 4.26588 4.37914 4.91068 5.10098 5.20386 5.24131 5.46025 5.54433 5.72552 5.94242 6.07954 6.17284 6.28932 6.58853 6.69643 6.73928 7.11635 7.29180 7.55004 7.74354 7.96305 8.42616 8.80254 8.95668 9.49872 11.00723 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.040467 B = 0.006196 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.759014 B = 4517.919025 C = 4581.451156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.086 3.914 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.055 0.945 9 C 0.250 3.750 10 H 0.053 0.947 11 N -0.808 5.808 12 C -0.026 4.026 13 C -0.131 4.131 14 C -0.033 4.033 15 C -0.229 4.229 16 C -0.104 4.104 17 C -0.102 4.102 18 C 0.094 3.906 19 O -0.327 6.327 20 C 0.525 3.475 21 O -0.468 6.468 22 H 0.258 0.742 23 H 0.320 0.680 24 H 0.301 0.699 25 H 0.133 0.867 26 H 0.127 0.873 27 H 0.132 0.868 28 H 0.114 0.886 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.479 -8.495 2.706 9.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.122 4.122 3 Si 0.715 3.285 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.074 0.926 9 C 0.140 3.860 10 H 0.071 0.929 11 N -0.334 5.334 12 C -0.029 4.029 13 C -0.149 4.149 14 C -0.051 4.051 15 C -0.231 4.231 16 C -0.105 4.105 17 C -0.120 4.120 18 C 0.020 3.980 19 O -0.243 6.243 20 C 0.369 3.631 21 O -0.355 6.355 22 H 0.068 0.932 23 H 0.133 0.867 24 H 0.111 0.889 25 H 0.151 0.849 26 H 0.145 0.855 27 H 0.150 0.850 28 H 0.132 0.868 29 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.375 -8.133 2.723 9.217 hybrid contribution 0.995 0.200 -0.244 1.043 sum 4.370 -7.933 2.479 9.390 Atomic orbital electron populations 1.70092 1.05714 1.26066 1.45873 1.24933 0.94682 0.98665 0.93889 0.86696 0.79951 0.83640 0.78223 1.20587 1.21162 1.19943 1.20759 0.92260 0.89055 1.55441 0.92645 1.18377 0.87467 0.88571 0.91570 0.92879 1.59187 1.27859 1.42162 1.04224 1.22253 0.94698 0.94501 0.91443 1.21070 0.97487 0.96883 0.99471 1.20781 0.95028 0.93221 0.96066 1.20540 1.04669 1.01667 0.96220 1.20761 0.97752 0.97151 0.94825 1.20273 0.98063 0.94326 0.99384 1.22369 0.92276 0.89672 0.93704 1.87174 1.60300 1.54505 1.22300 1.20588 0.79733 0.81733 0.81021 1.90838 1.41519 1.55286 1.47887 0.93195 0.86721 0.88890 0.84944 0.85519 0.85008 0.86818 0.86896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.03 12.77 55.43 0.71 -22.32 15 2 C 0.09 2.24 5.39 -17.82 -0.10 2.15 15 3 Si 0.89 20.22 29.54 -169.99 -5.02 15.20 15 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 7 C -0.54 -13.52 8.70 -34.44 -0.30 -13.82 15 8 H 0.06 1.42 7.74 -52.49 -0.41 1.01 15 9 C 0.25 5.51 2.85 -70.02 -0.20 5.31 15 10 H 0.05 1.28 8.00 -51.93 -0.42 0.86 15 11 N -0.81 -17.06 8.37 -6.65 -0.06 -17.12 15 12 C -0.03 -0.48 4.90 -104.47 -0.51 -0.99 15 13 C -0.13 -2.21 9.26 -39.63 -0.37 -2.58 15 14 C -0.03 -0.52 10.10 -39.17 -0.40 -0.92 15 15 C -0.23 -3.71 6.27 -105.08 -0.66 -4.37 15 16 C -0.10 -1.53 6.38 -104.26 -0.67 -2.19 15 17 C -0.10 -1.64 9.65 -39.74 -0.38 -2.03 15 18 C 0.09 1.06 7.92 36.05 0.29 1.34 15 19 O -0.33 -4.77 11.13 -39.20 -0.44 -5.21 15 20 C 0.53 8.81 8.58 34.47 0.30 9.11 15 21 O -0.47 -9.03 18.04 -18.92 -0.34 -9.37 15 22 H 0.26 6.78 8.31 -40.82 -0.34 6.44 15 23 H 0.32 6.38 7.33 -39.29 -0.29 6.09 15 24 H 0.30 5.61 9.06 -39.29 -0.36 5.25 15 25 H 0.13 2.13 6.66 -52.49 -0.35 1.79 15 26 H 0.13 1.79 8.06 -52.48 -0.42 1.37 15 27 H 0.13 1.93 8.04 -52.49 -0.42 1.51 15 28 H 0.11 1.02 8.14 -51.93 -0.42 0.60 15 29 H 0.11 0.96 8.14 -51.93 -0.42 0.54 15 LS Contribution 260.66 15.07 3.93 3.93 Total: -1.00 -29.49 260.66 -6.85 -36.34 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -2.64 Total: 7.54 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -3.00 Total: -8.99 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.65 Total: -39.44 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.78 Total: -14.58 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.49 -6.85 -36.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238602406.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.895 kcal (2) G-P(sol) polarization free energy of solvation -29.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds