Wall clock time and date at job start Mon Mar 30 2020 02:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99810 * 2 1 4 4 H 1.48503 * 109.46844 * 244.41021 * 3 2 1 5 5 H 1.48497 * 109.47239 * 4.40714 * 3 2 1 6 6 H 1.48499 * 109.47206 * 124.41347 * 3 2 1 7 7 C 1.37876 * 119.99686 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 337.14030 * 7 2 1 9 9 C 1.50698 * 119.99502 * 157.13895 * 7 2 1 10 10 C 1.53002 * 110.56516 * 180.50230 * 9 7 2 11 11 O 1.42904 * 109.47217 * 68.50969 * 10 9 7 12 12 C 1.51392 * 110.51168 * 303.17826 * 9 7 2 13 13 O 1.21282 * 126.44239 * 298.90963 * 12 9 7 14 14 N 1.34371 * 107.11233 * 118.64919 * 12 9 7 15 15 C 1.39530 * 112.25204 * 0.02562 * 14 12 9 16 16 C 1.39357 * 130.82880 * 179.97438 * 15 14 12 17 17 C 1.37937 * 120.13402 * 180.02562 * 16 15 14 18 18 C 1.38306 * 120.37355 * 359.97204 * 17 16 15 19 19 C 1.38396 * 119.82753 * 0.02562 * 18 17 16 20 20 C 1.37687 * 119.91134 * 359.97438 * 19 18 17 21 21 H 0.97000 * 120.00262 * 359.97438 * 1 2 3 22 22 H 1.08990 * 109.47653 * 188.51286 * 10 9 7 23 23 H 1.08999 * 109.46796 * 308.51826 * 10 9 7 24 24 H 0.96696 * 114.00183 * 180.02562 * 11 10 9 25 25 H 0.97002 * 123.87312 * 179.97438 * 14 12 9 26 26 H 1.08005 * 119.93567 * 0.02562 * 16 15 14 27 27 H 1.07998 * 119.81194 * 179.97438 * 17 16 15 28 28 H 1.08001 * 120.08658 * 179.97438 * 18 17 16 29 29 H 1.07997 * 120.04601 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.0203 1.7440 -1.2628 5 1 1.2877 2.7444 0.1076 6 1 3.1819 1.6509 1.1550 7 6 2.0045 -1.1941 0.0005 8 1 1.5281 -2.0925 0.3643 9 6 3.4227 -1.2455 -0.5065 10 6 3.9730 -2.6705 -0.4200 11 8 3.2927 -3.5019 -1.3625 12 6 3.4962 -0.7340 -1.9295 13 8 2.9329 -1.2054 -2.8945 14 7 4.2982 0.3441 -1.9211 15 6 4.7858 0.6301 -0.6454 16 6 5.6339 1.6421 -0.1999 17 6 5.9793 1.7193 1.1333 18 6 5.4879 0.7954 2.0376 19 6 4.6451 -0.2125 1.6027 20 6 4.2988 -0.2917 0.2725 21 1 -0.4850 0.8400 0.0004 22 1 5.0392 -2.6626 -0.6458 23 1 3.8175 -3.0596 0.5862 24 1 3.5909 -4.4217 -1.3627 25 1 4.5142 0.8634 -2.7114 26 1 6.0215 2.3676 -0.8999 27 1 6.6373 2.5055 1.4728 28 1 5.7617 0.8599 3.0803 29 1 4.2590 -0.9355 2.3059 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238696330.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:08 Heat of formation + Delta-G solvation = -15.970337 kcal Electronic energy + Delta-G solvation = -16929.776934 eV Core-core repulsion = 14205.390402 eV Total energy + Delta-G solvation = -2724.386532 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.14357 -37.63679 -36.01426 -34.83965 -33.25736 -31.48603 -29.32045 -28.11741 -25.13467 -23.70349 -21.97769 -20.76110 -19.34656 -17.46002 -16.78917 -16.43962 -15.76458 -15.63788 -15.15002 -14.06531 -13.66109 -13.63409 -13.40818 -13.21641 -12.81678 -12.57950 -12.03217 -11.67035 -11.27447 -11.13060 -10.55087 -10.28795 -10.00359 -9.97300 -9.34994 -9.24996 -8.77459 -8.37013 -8.21522 -7.37422 -6.24757 -4.19983 1.75059 1.82509 3.26045 3.37819 3.44194 3.55372 3.78289 4.33030 4.39472 4.79558 5.00390 5.17181 5.35546 5.43259 5.72026 5.86925 5.87770 5.90734 5.97826 6.19609 6.35302 6.47635 6.69742 6.88086 7.07438 7.20575 7.47344 7.55493 7.72121 8.25930 8.41472 8.82052 9.04374 9.36919 10.84101 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.022461 B = 0.016305 C = 0.013317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.279818 B = 1716.887586 C = 2102.050188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.088 3.912 3 Si 0.822 3.178 4 H -0.245 1.245 5 H -0.301 1.301 6 H -0.242 1.242 7 C -0.499 4.499 8 H 0.088 0.912 9 C 0.061 3.939 10 C 0.118 3.882 11 O -0.545 6.545 12 C 0.532 3.468 13 O -0.490 6.490 14 N -0.675 5.675 15 C 0.142 3.858 16 C -0.158 4.158 17 C -0.098 4.098 18 C -0.150 4.150 19 C -0.053 4.053 20 C -0.117 4.117 21 H 0.267 0.733 22 H 0.026 0.974 23 H 0.053 0.947 24 H 0.361 0.639 25 H 0.396 0.604 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.121 0.879 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.140 1.329 3.093 13.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.118 4.118 3 Si 0.648 3.352 4 H -0.170 1.170 5 H -0.229 1.229 6 H -0.166 1.166 7 C -0.535 4.535 8 H 0.105 0.895 9 C 0.056 3.944 10 C 0.040 3.960 11 O -0.347 6.347 12 C 0.321 3.679 13 O -0.361 6.361 14 N -0.319 5.319 15 C 0.044 3.956 16 C -0.179 4.179 17 C -0.116 4.116 18 C -0.170 4.170 19 C -0.071 4.071 20 C -0.121 4.121 21 H 0.077 0.923 22 H 0.044 0.956 23 H 0.071 0.929 24 H 0.205 0.795 25 H 0.233 0.767 26 H 0.134 0.866 27 H 0.138 0.862 28 H 0.139 0.861 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.212 1.600 2.431 12.554 hybrid contribution 0.617 1.073 -0.248 1.263 sum 12.829 2.673 2.183 13.285 Atomic orbital electron populations 1.70023 1.06641 1.27613 1.45502 1.24987 0.94504 0.99175 0.93171 0.88036 0.80755 0.83920 0.82476 1.16980 1.22865 1.16552 1.20255 0.92191 0.97029 1.44016 0.89450 1.18066 0.97094 0.90629 0.88563 1.21726 0.92377 0.89789 0.92150 1.86826 1.64612 1.22343 1.60935 1.21571 0.75427 0.78426 0.92521 1.90637 1.44473 1.60957 1.40074 1.44330 1.48206 1.31287 1.08098 1.18063 0.95632 0.96473 0.85401 1.20260 1.02152 0.98980 0.96558 1.20659 0.99850 0.98847 0.92290 1.20949 1.00341 0.96461 0.99202 1.20241 0.95348 0.97748 0.93795 1.20450 0.98588 0.99048 0.93988 0.92285 0.95599 0.92906 0.79495 0.76728 0.86590 0.86188 0.86148 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.87 13.96 55.43 0.77 -26.09 15 2 C 0.09 2.58 5.25 -17.82 -0.09 2.49 15 3 Si 0.82 20.65 22.43 -169.99 -3.81 16.84 15 4 H -0.24 -5.87 4.43 56.52 0.25 -5.62 15 5 H -0.30 -7.90 7.11 56.52 0.40 -7.50 15 6 H -0.24 -5.63 4.57 56.52 0.26 -5.38 15 7 C -0.50 -14.11 8.63 -34.44 -0.30 -14.41 15 8 H 0.09 2.67 8.02 -52.49 -0.42 2.25 15 9 C 0.06 1.45 0.62 -157.41 -0.10 1.35 15 10 C 0.12 2.39 6.01 37.16 0.22 2.61 15 11 O -0.55 -11.54 12.49 -47.95 -0.60 -12.14 15 12 C 0.53 13.26 5.99 -10.83 -0.06 13.19 15 13 O -0.49 -13.80 17.28 -7.16 -0.12 -13.92 15 14 N -0.67 -14.16 4.14 -9.70 -0.04 -14.20 15 15 C 0.14 2.80 4.04 -83.69 -0.34 2.47 15 16 C -0.16 -2.60 9.31 -39.28 -0.37 -2.97 15 17 C -0.10 -1.45 9.77 -39.67 -0.39 -1.83 15 18 C -0.15 -2.31 9.49 -39.50 -0.37 -2.68 15 19 C -0.05 -0.95 8.86 -39.72 -0.35 -1.31 15 20 C -0.12 -2.45 2.71 -104.37 -0.28 -2.73 15 21 H 0.27 7.85 8.31 -40.82 -0.34 7.51 15 22 H 0.03 0.46 8.11 -51.93 -0.42 0.04 15 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 15 24 H 0.36 5.25 9.12 45.56 0.42 5.66 15 25 H 0.40 7.14 8.96 -40.82 -0.37 6.77 15 26 H 0.12 1.60 8.06 -52.48 -0.42 1.17 15 27 H 0.12 1.36 8.06 -52.49 -0.42 0.94 15 28 H 0.12 1.47 8.06 -52.49 -0.42 1.04 15 29 H 0.13 2.11 8.06 -52.49 -0.42 1.69 15 LS Contribution 239.96 15.07 3.62 3.62 Total: -1.00 -35.63 239.96 -4.95 -40.58 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -2.34 Total: 9.13 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -2.43 Total: -3.82 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.73 Total: -40.29 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.72 Total: -26.06 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -3.81 Total: 16.84 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -35.63 -4.95 -40.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238696330.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.610 kcal (2) G-P(sol) polarization free energy of solvation -35.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds