Wall clock time and date at job start Mon Mar 30 2020 02:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99810 * 2 1 4 4 H 1.48503 * 109.46844 * 244.41021 * 3 2 1 5 5 H 1.48497 * 109.47239 * 4.40714 * 3 2 1 6 6 H 1.48499 * 109.47206 * 124.41347 * 3 2 1 7 7 C 1.37876 * 119.99686 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 337.14030 * 7 2 1 9 9 C 1.50698 * 119.99502 * 157.13895 * 7 2 1 10 10 C 1.53002 * 110.56516 * 180.50230 * 9 7 2 11 11 O 1.42904 * 109.47217 * 68.50969 * 10 9 7 12 12 C 1.51392 * 110.51168 * 303.17826 * 9 7 2 13 13 O 1.21282 * 126.44239 * 298.90963 * 12 9 7 14 14 N 1.34371 * 107.11233 * 118.64919 * 12 9 7 15 15 C 1.39530 * 112.25204 * 0.02562 * 14 12 9 16 16 C 1.39357 * 130.82880 * 179.97438 * 15 14 12 17 17 C 1.37937 * 120.13402 * 180.02562 * 16 15 14 18 18 C 1.38306 * 120.37355 * 359.97204 * 17 16 15 19 19 C 1.38396 * 119.82753 * 0.02562 * 18 17 16 20 20 C 1.37687 * 119.91134 * 359.97438 * 19 18 17 21 21 H 0.97000 * 120.00262 * 359.97438 * 1 2 3 22 22 H 1.08990 * 109.47653 * 188.51286 * 10 9 7 23 23 H 1.08999 * 109.46796 * 308.51826 * 10 9 7 24 24 H 0.96696 * 114.00183 * 180.02562 * 11 10 9 25 25 H 0.97002 * 123.87312 * 179.97438 * 14 12 9 26 26 H 1.08005 * 119.93567 * 0.02562 * 16 15 14 27 27 H 1.07998 * 119.81194 * 179.97438 * 17 16 15 28 28 H 1.08001 * 120.08658 * 179.97438 * 18 17 16 29 29 H 1.07997 * 120.04601 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.0203 1.7440 -1.2628 5 1 1.2877 2.7444 0.1076 6 1 3.1819 1.6509 1.1550 7 6 2.0045 -1.1941 0.0005 8 1 1.5281 -2.0925 0.3643 9 6 3.4227 -1.2455 -0.5065 10 6 3.9730 -2.6705 -0.4200 11 8 3.2927 -3.5019 -1.3625 12 6 3.4962 -0.7340 -1.9295 13 8 2.9329 -1.2054 -2.8945 14 7 4.2982 0.3441 -1.9211 15 6 4.7858 0.6301 -0.6454 16 6 5.6339 1.6421 -0.1999 17 6 5.9793 1.7193 1.1333 18 6 5.4879 0.7954 2.0376 19 6 4.6451 -0.2125 1.6027 20 6 4.2988 -0.2917 0.2725 21 1 -0.4850 0.8400 0.0004 22 1 5.0392 -2.6626 -0.6458 23 1 3.8175 -3.0596 0.5862 24 1 3.5909 -4.4217 -1.3627 25 1 4.5142 0.8634 -2.7114 26 1 6.0215 2.3676 -0.8999 27 1 6.6373 2.5055 1.4728 28 1 5.7617 0.8599 3.0803 29 1 4.2590 -0.9355 2.3059 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238696330.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:08 Heat of formation + Delta-G solvation = -45.990827 kcal Electronic energy + Delta-G solvation = -16931.078720 eV Core-core repulsion = 14205.390402 eV Total energy + Delta-G solvation = -2725.688318 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.75539 -39.25773 -37.67776 -36.48249 -35.21232 -33.31594 -30.73367 -29.59495 -27.10713 -25.39737 -23.37368 -22.22900 -21.16465 -19.15648 -18.38913 -18.28030 -17.60578 -17.29698 -16.50323 -15.77463 -15.58684 -15.10836 -15.07709 -14.72692 -14.54640 -14.21353 -13.67044 -13.33230 -13.04248 -12.73541 -12.25057 -12.10766 -11.69883 -11.61520 -11.16925 -10.99935 -10.58574 -10.40204 -9.61146 -8.86984 -8.45126 -6.43794 0.35446 0.51509 1.28794 1.37606 1.42553 1.74592 2.19621 2.32161 2.83706 2.97542 3.46643 3.55758 4.01680 4.25842 4.31276 4.32841 4.42133 4.54342 4.65765 4.78288 4.84698 5.19974 5.32884 5.40575 5.62168 5.74065 5.82380 5.96211 6.12880 6.26021 6.54350 7.08111 7.15661 7.26295 8.67141 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.022461 B = 0.016305 C = 0.013317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.279818 B = 1716.887586 C = 2102.050188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.026 3.974 3 Si 0.889 3.111 4 H -0.229 1.229 5 H -0.322 1.322 6 H -0.208 1.208 7 C -0.499 4.499 8 H 0.042 0.958 9 C 0.047 3.953 10 C 0.117 3.883 11 O -0.579 6.579 12 C 0.523 3.477 13 O -0.541 6.541 14 N -0.665 5.665 15 C 0.112 3.888 16 C -0.148 4.148 17 C -0.087 4.087 18 C -0.137 4.137 19 C -0.068 4.068 20 C -0.141 4.141 21 H 0.265 0.735 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.387 0.613 25 H 0.410 0.590 26 H 0.149 0.851 27 H 0.169 0.831 28 H 0.160 0.840 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.104 3.690 4.602 18.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.175 4.175 3 Si 0.713 3.287 4 H -0.153 1.153 5 H -0.251 1.251 6 H -0.130 1.130 7 C -0.536 4.536 8 H 0.060 0.940 9 C 0.043 3.957 10 C 0.039 3.961 11 O -0.385 6.385 12 C 0.312 3.688 13 O -0.417 6.417 14 N -0.310 5.310 15 C 0.016 3.984 16 C -0.169 4.169 17 C -0.105 4.105 18 C -0.155 4.155 19 C -0.087 4.087 20 C -0.144 4.144 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.235 0.765 25 H 0.249 0.751 26 H 0.167 0.833 27 H 0.186 0.814 28 H 0.178 0.822 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 16.259 3.955 3.975 17.198 hybrid contribution -0.508 0.233 -0.639 0.849 sum 15.750 4.188 3.336 16.636 Atomic orbital electron populations 1.70185 1.08724 1.28278 1.48853 1.25929 0.95166 1.03359 0.93028 0.87050 0.79390 0.77908 0.84359 1.15284 1.25125 1.12976 1.20408 0.94851 0.95255 1.43041 0.94002 1.18094 0.95355 0.93762 0.88474 1.21796 0.93499 0.88193 0.92614 1.86762 1.65727 1.24568 1.61460 1.21643 0.75480 0.79313 0.92341 1.90593 1.46803 1.62777 1.41498 1.44035 1.47198 1.30117 1.09612 1.18364 0.97772 0.98111 0.84148 1.20758 1.00105 0.97925 0.98137 1.21290 0.98918 0.99108 0.91147 1.21464 0.97978 0.94643 1.01451 1.20531 0.96264 0.99197 0.92701 1.20156 0.99913 0.98927 0.95380 0.92618 0.92698 0.91736 0.76546 0.75130 0.83336 0.81387 0.82207 0.85073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -60.44 13.96 21.45 0.30 -60.14 15 2 C 0.03 1.56 5.25 84.65 0.44 2.01 15 3 Si 0.89 43.07 22.43 68.60 1.54 44.61 15 4 H -0.23 -10.34 4.43 99.48 0.44 -9.90 15 5 H -0.32 -16.47 7.11 99.48 0.71 -15.76 15 6 H -0.21 -8.72 4.57 99.48 0.45 -8.27 15 7 C -0.50 -29.38 8.63 25.60 0.22 -29.16 15 8 H 0.04 2.74 8.02 -2.91 -0.02 2.71 15 9 C 0.05 2.27 0.62 -54.06 -0.03 2.23 15 10 C 0.12 4.73 6.01 71.98 0.43 5.17 15 11 O -0.58 -25.19 12.49 -136.82 -1.71 -26.90 15 12 C 0.52 26.23 5.99 87.94 0.53 26.75 15 13 O -0.54 -31.46 17.28 9.12 0.16 -31.30 15 14 N -0.66 -26.65 4.14 -303.22 -1.25 -27.90 15 15 C 0.11 4.01 4.04 38.34 0.15 4.16 15 16 C -0.15 -3.94 9.31 22.47 0.21 -3.73 15 17 C -0.09 -1.89 9.77 22.21 0.22 -1.67 15 18 C -0.14 -3.29 9.49 22.32 0.21 -3.08 15 19 C -0.07 -2.21 8.86 22.18 0.20 -2.01 15 20 C -0.14 -5.51 2.71 -19.70 -0.05 -5.56 15 21 H 0.26 16.39 8.31 -92.71 -0.77 15.62 15 22 H 0.05 1.88 8.11 -2.39 -0.02 1.86 15 23 H 0.06 2.38 8.14 -2.39 -0.02 2.37 15 24 H 0.39 11.42 9.12 -74.06 -0.68 10.74 15 25 H 0.41 13.90 8.96 -92.71 -0.83 13.07 15 26 H 0.15 3.00 8.06 -2.91 -0.02 2.97 15 27 H 0.17 2.20 8.06 -2.91 -0.02 2.17 15 28 H 0.16 2.64 8.06 -2.91 -0.02 2.61 15 29 H 0.13 4.01 8.06 -2.91 -0.02 3.99 15 Total: -1.00 -83.07 239.96 0.73 -82.35 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -0.83 Total: 24.18 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 2.53 Total: -4.90 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -0.95 Total: -88.04 kcal Atomic # 8 Polarization: -56.65 SS G_CDS: -1.55 Total: -58.20 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.54 Total: 44.61 kcal Total: -83.07 0.73 -82.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238696330.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.354 kcal (2) G-P(sol) polarization free energy of solvation -83.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds