Wall clock time and date at job start Mon Mar 30 2020 02:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86790 * 119.99960 * 2 1 4 4 H 1.48503 * 109.47118 * 239.99820 * 3 2 1 5 5 H 1.48499 * 109.47635 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47227 * 120.00435 * 3 2 1 7 7 C 1.37884 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99651 * 185.09756 * 7 2 1 9 9 C 1.50699 * 120.00202 * 5.10320 * 7 2 1 10 10 C 1.52998 * 110.56590 * 177.51933 * 9 7 2 11 11 O 1.42900 * 109.47173 * 302.32436 * 10 9 7 12 12 C 1.51392 * 110.51067 * 54.84256 * 9 7 2 13 13 O 1.21289 * 126.44678 * 61.35138 * 12 9 7 14 14 N 1.34369 * 107.11571 * 241.35445 * 12 9 7 15 15 C 1.39535 * 112.24914 * 359.97438 * 14 12 9 16 16 C 1.39356 * 130.82818 * 180.02562 * 15 14 12 17 17 C 1.37939 * 120.13529 * 180.23067 * 16 15 14 18 18 C 1.38309 * 120.37037 * 359.49557 * 17 16 15 19 19 C 1.38394 * 119.82338 * 0.49950 * 18 17 16 20 20 C 1.37673 * 119.91699 * 359.75602 * 19 18 17 21 21 H 0.97000 * 120.00099 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.46632 * 62.32089 * 10 9 7 23 23 H 1.09001 * 109.47212 * 182.31870 * 10 9 7 24 24 H 0.96698 * 114.00344 * 179.97438 * 11 10 9 25 25 H 0.97002 * 123.87740 * 180.02562 * 14 12 9 26 26 H 1.08001 * 119.93403 * 359.95685 * 16 15 14 27 27 H 1.07996 * 119.81860 * 179.74565 * 17 16 15 28 28 H 1.08000 * 120.08536 * 180.25469 * 18 17 16 29 29 H 1.08005 * 120.04306 * 179.72385 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0813 -1.1960 0.0826 9 6 1.2554 -2.4966 -0.1172 10 6 2.2300 -3.6753 -0.1572 11 8 3.1331 -3.5098 -1.2523 12 6 0.3754 -2.4939 -1.3491 13 8 0.7461 -2.3892 -2.4992 14 7 -0.8937 -2.6291 -0.9287 15 6 -0.9827 -2.7254 0.4605 16 6 -2.0893 -2.8736 1.2944 17 6 -1.9217 -2.9415 2.6619 18 6 -0.6561 -2.8738 3.2155 19 6 0.4477 -2.7267 2.3937 20 6 0.2827 -2.6533 1.0289 21 1 -0.4850 0.8400 0.0004 22 1 2.7929 -3.7131 0.7754 23 1 1.6726 -4.6036 -0.2830 24 1 3.7813 -4.2221 -1.3387 25 1 -1.6599 -2.6575 -1.5229 26 1 -3.0805 -2.9310 0.8695 27 1 -2.7832 -3.0523 3.3037 28 1 -0.5298 -2.9316 4.2866 29 1 1.4373 -2.6689 2.8225 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238698431.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:11 Heat of formation + Delta-G solvation = -44.902357 kcal Electronic energy + Delta-G solvation = -16741.161563 eV Core-core repulsion = 14015.520444 eV Total energy + Delta-G solvation = -2725.641118 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.40024 -37.18490 -35.89663 -34.41771 -33.11617 -31.06005 -28.89893 -27.70874 -24.96695 -23.55931 -21.55088 -20.38762 -19.28433 -17.19911 -16.55698 -16.13720 -15.36977 -14.94702 -14.84109 -13.99523 -13.79427 -13.27364 -13.03520 -12.63438 -12.30899 -12.11839 -11.83554 -11.39878 -11.12553 -10.90911 -10.60119 -10.39722 -9.78754 -9.70613 -9.58315 -9.26384 -8.77902 -8.36340 -7.88622 -6.90645 -6.13241 -4.21554 2.25183 2.31054 3.29515 3.34325 3.39416 3.88308 4.22503 4.37272 4.86401 5.00031 5.26791 5.47205 5.68939 5.80073 5.96925 6.00268 6.17863 6.25934 6.31960 6.55127 6.63200 6.81178 7.12380 7.27521 7.48869 7.62671 7.77607 7.98718 8.02181 8.18165 8.47756 8.75376 9.40527 9.43438 10.88990 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.020485 B = 0.014066 C = 0.011359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.497203 B = 1990.175946 C = 2464.490907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.487 4.487 8 H 0.073 0.927 9 C 0.075 3.925 10 C 0.109 3.891 11 O -0.545 6.545 12 C 0.559 3.441 13 O -0.521 6.521 14 N -0.659 5.659 15 C 0.186 3.814 16 C -0.162 4.162 17 C -0.107 4.107 18 C -0.163 4.163 19 C -0.071 4.071 20 C -0.070 4.070 21 H 0.265 0.735 22 H 0.046 0.954 23 H 0.023 0.977 24 H 0.358 0.642 25 H 0.389 0.611 26 H 0.107 0.893 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.824 -6.944 5.145 8.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.524 4.524 8 H 0.092 0.908 9 C 0.071 3.929 10 C 0.031 3.969 11 O -0.347 6.347 12 C 0.349 3.651 13 O -0.396 6.396 14 N -0.299 5.299 15 C 0.087 3.913 16 C -0.183 4.183 17 C -0.125 4.125 18 C -0.182 4.182 19 C -0.090 4.090 20 C -0.073 4.073 21 H 0.075 0.925 22 H 0.065 0.935 23 H 0.041 0.959 24 H 0.202 0.798 25 H 0.224 0.776 26 H 0.125 0.875 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.999 -6.177 4.383 7.833 hybrid contribution -0.006 0.765 -0.126 0.775 sum -2.006 -5.413 4.257 7.172 Atomic orbital electron populations 1.69924 1.05826 1.27308 1.47962 1.25054 0.95097 0.99817 0.94069 0.86416 0.79482 0.82003 0.78822 1.19929 1.21324 1.19997 1.20477 0.93211 0.87141 1.51603 0.90844 1.17787 0.91002 0.96187 0.87875 1.21863 0.90789 0.95384 0.88854 1.86811 1.47541 1.49334 1.51037 1.21186 0.82030 0.71195 0.90684 1.90581 1.78110 1.49603 1.21320 1.43748 1.09853 1.70764 1.05495 1.17965 0.95038 0.95164 0.83111 1.20076 0.95919 1.09298 0.93037 1.20467 0.96754 1.01710 0.93610 1.20741 0.92628 1.06310 0.98524 1.20073 0.98307 0.99011 0.91617 1.20092 0.94092 0.98857 0.94300 0.92531 0.93544 0.95862 0.79848 0.77565 0.87529 0.87126 0.87155 0.86799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.39 10.36 55.43 0.57 -23.82 15 2 C 0.06 1.77 5.15 -17.82 -0.09 1.68 15 3 Si 0.91 21.83 29.54 -169.99 -5.02 16.81 15 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 15 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 7 C -0.49 -13.33 7.82 -34.44 -0.27 -13.60 15 8 H 0.07 2.01 7.75 -52.49 -0.41 1.61 15 9 C 0.08 1.86 0.62 -157.41 -0.10 1.76 15 10 C 0.11 2.29 5.98 37.16 0.22 2.52 15 11 O -0.55 -11.62 12.73 -36.20 -0.46 -12.08 15 12 C 0.56 14.63 6.08 -10.83 -0.07 14.57 15 13 O -0.52 -15.15 17.66 4.58 0.08 -15.07 15 14 N -0.66 -14.95 5.59 -9.70 -0.05 -15.00 15 15 C 0.19 4.04 6.16 -83.69 -0.52 3.53 15 16 C -0.16 -3.01 10.07 -39.28 -0.40 -3.41 15 17 C -0.11 -1.81 10.02 -39.66 -0.40 -2.21 15 18 C -0.16 -2.83 10.07 -39.50 -0.40 -3.23 15 19 C -0.07 -1.43 10.03 -39.73 -0.40 -1.82 15 20 C -0.07 -1.58 4.03 -104.37 -0.42 -2.01 15 21 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 22 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 15 24 H 0.36 5.26 9.12 45.56 0.42 5.68 15 25 H 0.39 7.75 8.96 -40.82 -0.37 7.39 15 26 H 0.11 1.72 8.06 -52.49 -0.42 1.29 15 27 H 0.11 1.51 8.06 -52.49 -0.42 1.09 15 28 H 0.11 1.58 8.06 -52.49 -0.42 1.16 15 29 H 0.11 2.11 8.06 -52.48 -0.42 1.69 15 LS Contribution 255.88 15.07 3.86 3.86 Total: -1.00 -33.18 255.88 -5.88 -39.06 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -2.03 Total: 8.46 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -2.83 Total: -2.22 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.52 Total: -38.82 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.38 Total: -27.15 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -33.18 -5.88 -39.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238698431.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.845 kcal (2) G-P(sol) polarization free energy of solvation -33.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds