Wall clock time and date at job start Mon Mar 30 2020 02:59:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86790 * 119.99960 * 2 1
4 4 H 1.48503 * 109.47118 * 239.99820 * 3 2 1
5 5 H 1.48499 * 109.47635 * 0.02562 * 3 2 1
6 6 H 1.48501 * 109.47227 * 120.00435 * 3 2 1
7 7 C 1.37884 * 119.99643 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99651 * 185.09756 * 7 2 1
9 9 C 1.50699 * 120.00202 * 5.10320 * 7 2 1
10 10 C 1.52998 * 110.56590 * 177.51933 * 9 7 2
11 11 O 1.42900 * 109.47173 * 302.32436 * 10 9 7
12 12 C 1.51392 * 110.51067 * 54.84256 * 9 7 2
13 13 O 1.21289 * 126.44678 * 61.35138 * 12 9 7
14 14 N 1.34369 * 107.11571 * 241.35445 * 12 9 7
15 15 C 1.39535 * 112.24914 * 359.97438 * 14 12 9
16 16 C 1.39356 * 130.82818 * 180.02562 * 15 14 12
17 17 C 1.37939 * 120.13529 * 180.23067 * 16 15 14
18 18 C 1.38309 * 120.37037 * 359.49557 * 17 16 15
19 19 C 1.38394 * 119.82338 * 0.49950 * 18 17 16
20 20 C 1.37673 * 119.91699 * 359.75602 * 19 18 17
21 21 H 0.97000 * 120.00099 * 359.97438 * 1 2 3
22 22 H 1.08999 * 109.46632 * 62.32089 * 10 9 7
23 23 H 1.09001 * 109.47212 * 182.31870 * 10 9 7
24 24 H 0.96698 * 114.00344 * 179.97438 * 11 10 9
25 25 H 0.97002 * 123.87740 * 180.02562 * 14 12 9
26 26 H 1.08001 * 119.93403 * 359.95685 * 16 15 14
27 27 H 1.07996 * 119.81860 * 179.74565 * 17 16 15
28 28 H 1.08000 * 120.08536 * 180.25469 * 18 17 16
29 29 H 1.08005 * 120.04306 * 179.72385 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1029 1.6963 -1.2125
5 1 1.2842 2.7464 0.0006
6 1 3.1029 1.6963 1.2124
7 6 2.0045 -1.1941 -0.0005
8 1 3.0813 -1.1960 0.0826
9 6 1.2554 -2.4966 -0.1172
10 6 2.2300 -3.6753 -0.1572
11 8 3.1331 -3.5098 -1.2523
12 6 0.3754 -2.4939 -1.3491
13 8 0.7461 -2.3892 -2.4992
14 7 -0.8937 -2.6291 -0.9287
15 6 -0.9827 -2.7254 0.4605
16 6 -2.0893 -2.8736 1.2944
17 6 -1.9217 -2.9415 2.6619
18 6 -0.6561 -2.8738 3.2155
19 6 0.4477 -2.7267 2.3937
20 6 0.2827 -2.6533 1.0289
21 1 -0.4850 0.8400 0.0004
22 1 2.7929 -3.7131 0.7754
23 1 1.6726 -4.6036 -0.2830
24 1 3.7813 -4.2221 -1.3387
25 1 -1.6599 -2.6575 -1.5229
26 1 -3.0805 -2.9310 0.8695
27 1 -2.7832 -3.0523 3.3037
28 1 -0.5298 -2.9316 4.2866
29 1 1.4373 -2.6689 2.8225
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000238698431.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:59:11
Heat of formation + Delta-G solvation = -70.406929 kcal
Electronic energy + Delta-G solvation = -16742.267524 eV
Core-core repulsion = 14015.520444 eV
Total energy + Delta-G solvation = -2726.747080 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 233.084 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-42.11216 -38.90133 -37.57388 -36.16672 -35.02124 -32.84053 -30.45266 -29.30373
-26.90326 -25.27297 -23.10315 -21.98380 -21.12666 -18.93128 -18.15835 -18.00951
-17.11018 -16.90486 -16.37187 -15.84348 -15.49065 -14.84041 -14.53209 -14.41413
-14.19670 -13.73391 -13.45014 -13.20514 -12.83903 -12.71745 -12.44026 -12.05667
-11.56847 -11.39043 -11.32274 -11.02299 -10.67149 -10.30117 -9.39881 -8.56212
-8.12717 -6.29229 0.71539 0.83249 1.36160 1.41068 1.46762 2.01512
2.39279 2.56673 3.08423 3.32416 3.63610 3.85804 4.25801 4.37453
4.44659 4.50921 4.55575 4.76666 4.87426 4.97636 5.07736 5.35826
5.59642 5.67237 5.83019 5.94832 6.00993 6.17170 6.32598 6.55086
6.68119 7.13639 7.35077 7.55182 8.82482
Molecular weight = 233.08amu
Principal moments of inertia in cm(-1)
A = 0.020485 B = 0.014066 C = 0.011359
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1366.497203 B = 1990.175946 C = 2464.490907
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.889 5.889
2 C 0.020 3.980
3 Si 0.954 3.046
4 H -0.285 1.285
5 H -0.284 1.284
6 H -0.260 1.260
7 C -0.501 4.501
8 H 0.061 0.939
9 C 0.059 3.941
10 C 0.112 3.888
11 O -0.574 6.574
12 C 0.547 3.453
13 O -0.570 6.570
14 N -0.652 5.652
15 C 0.152 3.848
16 C -0.158 4.158
17 C -0.101 4.101
18 C -0.151 4.151
19 C -0.087 4.087
20 C -0.092 4.092
21 H 0.260 0.740
22 H 0.065 0.935
23 H 0.038 0.962
24 H 0.384 0.616
25 H 0.398 0.602
26 H 0.131 0.869
27 H 0.154 0.846
28 H 0.148 0.852
29 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.777 -7.381 7.486 10.874
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.525 5.525
2 C -0.181 4.181
3 Si 0.780 3.220
4 H -0.212 1.212
5 H -0.210 1.210
6 H -0.185 1.185
7 C -0.539 4.539
8 H 0.079 0.921
9 C 0.056 3.944
10 C 0.034 3.966
11 O -0.380 6.380
12 C 0.337 3.663
13 O -0.449 6.449
14 N -0.292 5.292
15 C 0.055 3.945
16 C -0.180 4.180
17 C -0.119 4.119
18 C -0.170 4.170
19 C -0.106 4.106
20 C -0.095 4.095
21 H 0.069 0.931
22 H 0.084 0.916
23 H 0.056 0.944
24 H 0.232 0.768
25 H 0.234 0.766
26 H 0.149 0.851
27 H 0.171 0.829
28 H 0.166 0.834
29 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges -2.968 -6.645 6.778 9.944
hybrid contribution 0.255 0.822 -0.773 1.157
sum -2.713 -5.822 6.005 8.793
Atomic orbital electron populations
1.70034 1.06442 1.27193 1.48837 1.25684 0.95939 1.02281 0.94246
0.85654 0.78514 0.79125 0.78689 1.21156 1.20963 1.18465 1.20684
0.92933 0.88867 1.51397 0.92054 1.17923 0.91940 0.96331 0.88238
1.21850 0.90645 0.94614 0.89532 1.86739 1.48522 1.51323 1.51422
1.21503 0.83482 0.70760 0.90508 1.90524 1.79216 1.52206 1.22940
1.43553 1.09164 1.69938 1.06538 1.18283 0.96095 0.97595 0.82486
1.20498 0.96101 1.07693 0.93663 1.21000 0.98137 0.99497 0.93261
1.21201 0.91906 1.03730 1.00165 1.20354 0.99876 0.99405 0.90917
1.20032 0.93698 1.00955 0.94849 0.93113 0.91641 0.94392 0.76829
0.76559 0.85096 0.82873 0.83426 0.86109
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -49.80 10.36 21.45 0.22 -49.58 15
2 C 0.02 1.13 5.15 84.66 0.44 1.57 15
3 Si 0.95 45.05 29.54 68.60 2.03 47.07 15
4 H -0.29 -13.88 7.11 99.48 0.71 -13.18 15
5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 15
6 H -0.26 -11.54 7.11 99.48 0.71 -10.83 15
7 C -0.50 -27.79 7.82 25.60 0.20 -27.59 15
8 H 0.06 3.43 7.75 -2.91 -0.02 3.41 15
9 C 0.06 2.95 0.62 -54.06 -0.03 2.92 15
10 C 0.11 4.67 5.98 71.98 0.43 5.10 15
11 O -0.57 -24.66 12.73 -148.05 -1.89 -26.54 15
12 C 0.55 29.25 6.08 87.94 0.53 29.78 15
13 O -0.57 -34.33 17.66 -2.13 -0.04 -34.37 15
14 N -0.65 -29.81 5.59 -303.22 -1.70 -31.51 15
15 C 0.15 6.47 6.16 38.34 0.24 6.70 15
16 C -0.16 -5.42 10.07 22.47 0.23 -5.19 15
17 C -0.10 -2.94 10.02 22.22 0.22 -2.71 15
18 C -0.15 -4.62 10.07 22.32 0.22 -4.39 15
19 C -0.09 -3.28 10.03 22.17 0.22 -3.06 15
20 C -0.09 -4.09 4.03 -19.70 -0.08 -4.17 15
21 H 0.26 14.25 8.31 -92.71 -0.77 13.48 15
22 H 0.07 2.42 8.14 -2.39 -0.02 2.40 15
23 H 0.04 1.44 8.14 -2.39 -0.02 1.42 15
24 H 0.38 11.17 9.12 -74.06 -0.68 10.49 15
25 H 0.40 16.06 8.96 -92.71 -0.83 15.23 15
26 H 0.13 3.75 8.06 -2.91 -0.02 3.73 15
27 H 0.15 3.20 8.06 -2.91 -0.02 3.18 15
28 H 0.15 3.39 8.06 -2.91 -0.02 3.37 15
29 H 0.12 4.26 8.06 -2.91 -0.02 4.23 15
Total: -1.00 -72.39 255.88 0.94 -71.45
By element:
Atomic # 1 Polarization: 24.83 SS G_CDS: -0.31 Total: 24.51 kcal
Atomic # 6 Polarization: -3.66 SS G_CDS: 2.62 Total: -1.04 kcal
Atomic # 7 Polarization: -79.61 SS G_CDS: -1.47 Total: -81.09 kcal
Atomic # 8 Polarization: -58.99 SS G_CDS: -1.92 Total: -60.91 kcal
Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal
Total: -72.39 0.94 -71.45 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238698431.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.042 kcal
(2) G-P(sol) polarization free energy of solvation -72.387 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.345 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.449 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.407 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds