Wall clock time and date at job start Mon Mar 30 2020 02:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86790 * 119.99960 * 2 1 4 4 H 1.48503 * 109.47118 * 239.99820 * 3 2 1 5 5 H 1.48499 * 109.47635 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47227 * 120.00435 * 3 2 1 7 7 C 1.37884 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99651 * 185.09756 * 7 2 1 9 9 C 1.50699 * 120.00202 * 5.10320 * 7 2 1 10 10 C 1.52998 * 110.56590 * 177.51933 * 9 7 2 11 11 O 1.42900 * 109.47173 * 302.32436 * 10 9 7 12 12 C 1.51392 * 110.51067 * 54.84256 * 9 7 2 13 13 O 1.21289 * 126.44678 * 61.35138 * 12 9 7 14 14 N 1.34369 * 107.11571 * 241.35445 * 12 9 7 15 15 C 1.39535 * 112.24914 * 359.97438 * 14 12 9 16 16 C 1.39356 * 130.82818 * 180.02562 * 15 14 12 17 17 C 1.37939 * 120.13529 * 180.23067 * 16 15 14 18 18 C 1.38309 * 120.37037 * 359.49557 * 17 16 15 19 19 C 1.38394 * 119.82338 * 0.49950 * 18 17 16 20 20 C 1.37673 * 119.91699 * 359.75602 * 19 18 17 21 21 H 0.97000 * 120.00099 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.46632 * 62.32089 * 10 9 7 23 23 H 1.09001 * 109.47212 * 182.31870 * 10 9 7 24 24 H 0.96698 * 114.00344 * 179.97438 * 11 10 9 25 25 H 0.97002 * 123.87740 * 180.02562 * 14 12 9 26 26 H 1.08001 * 119.93403 * 359.95685 * 16 15 14 27 27 H 1.07996 * 119.81860 * 179.74565 * 17 16 15 28 28 H 1.08000 * 120.08536 * 180.25469 * 18 17 16 29 29 H 1.08005 * 120.04306 * 179.72385 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0813 -1.1960 0.0826 9 6 1.2554 -2.4966 -0.1172 10 6 2.2300 -3.6753 -0.1572 11 8 3.1331 -3.5098 -1.2523 12 6 0.3754 -2.4939 -1.3491 13 8 0.7461 -2.3892 -2.4992 14 7 -0.8937 -2.6291 -0.9287 15 6 -0.9827 -2.7254 0.4605 16 6 -2.0893 -2.8736 1.2944 17 6 -1.9217 -2.9415 2.6619 18 6 -0.6561 -2.8738 3.2155 19 6 0.4477 -2.7267 2.3937 20 6 0.2827 -2.6533 1.0289 21 1 -0.4850 0.8400 0.0004 22 1 2.7929 -3.7131 0.7754 23 1 1.6726 -4.6036 -0.2830 24 1 3.7813 -4.2221 -1.3387 25 1 -1.6599 -2.6575 -1.5229 26 1 -3.0805 -2.9310 0.8695 27 1 -2.7832 -3.0523 3.3037 28 1 -0.5298 -2.9316 4.2866 29 1 1.4373 -2.6689 2.8225 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238698431.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:11 Heat of formation + Delta-G solvation = -70.406929 kcal Electronic energy + Delta-G solvation = -16742.267524 eV Core-core repulsion = 14015.520444 eV Total energy + Delta-G solvation = -2726.747080 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.11216 -38.90133 -37.57388 -36.16672 -35.02124 -32.84053 -30.45266 -29.30373 -26.90326 -25.27297 -23.10315 -21.98380 -21.12666 -18.93128 -18.15835 -18.00951 -17.11018 -16.90486 -16.37187 -15.84348 -15.49065 -14.84041 -14.53209 -14.41413 -14.19670 -13.73391 -13.45014 -13.20514 -12.83903 -12.71745 -12.44026 -12.05667 -11.56847 -11.39043 -11.32274 -11.02299 -10.67149 -10.30117 -9.39881 -8.56212 -8.12717 -6.29229 0.71539 0.83249 1.36160 1.41068 1.46762 2.01512 2.39279 2.56673 3.08423 3.32416 3.63610 3.85804 4.25801 4.37453 4.44659 4.50921 4.55575 4.76666 4.87426 4.97636 5.07736 5.35826 5.59642 5.67237 5.83019 5.94832 6.00993 6.17170 6.32598 6.55086 6.68119 7.13639 7.35077 7.55182 8.82482 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.020485 B = 0.014066 C = 0.011359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.497203 B = 1990.175946 C = 2464.490907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.020 3.980 3 Si 0.954 3.046 4 H -0.285 1.285 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.501 4.501 8 H 0.061 0.939 9 C 0.059 3.941 10 C 0.112 3.888 11 O -0.574 6.574 12 C 0.547 3.453 13 O -0.570 6.570 14 N -0.652 5.652 15 C 0.152 3.848 16 C -0.158 4.158 17 C -0.101 4.101 18 C -0.151 4.151 19 C -0.087 4.087 20 C -0.092 4.092 21 H 0.260 0.740 22 H 0.065 0.935 23 H 0.038 0.962 24 H 0.384 0.616 25 H 0.398 0.602 26 H 0.131 0.869 27 H 0.154 0.846 28 H 0.148 0.852 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.777 -7.381 7.486 10.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.181 4.181 3 Si 0.780 3.220 4 H -0.212 1.212 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.539 4.539 8 H 0.079 0.921 9 C 0.056 3.944 10 C 0.034 3.966 11 O -0.380 6.380 12 C 0.337 3.663 13 O -0.449 6.449 14 N -0.292 5.292 15 C 0.055 3.945 16 C -0.180 4.180 17 C -0.119 4.119 18 C -0.170 4.170 19 C -0.106 4.106 20 C -0.095 4.095 21 H 0.069 0.931 22 H 0.084 0.916 23 H 0.056 0.944 24 H 0.232 0.768 25 H 0.234 0.766 26 H 0.149 0.851 27 H 0.171 0.829 28 H 0.166 0.834 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.968 -6.645 6.778 9.944 hybrid contribution 0.255 0.822 -0.773 1.157 sum -2.713 -5.822 6.005 8.793 Atomic orbital electron populations 1.70034 1.06442 1.27193 1.48837 1.25684 0.95939 1.02281 0.94246 0.85654 0.78514 0.79125 0.78689 1.21156 1.20963 1.18465 1.20684 0.92933 0.88867 1.51397 0.92054 1.17923 0.91940 0.96331 0.88238 1.21850 0.90645 0.94614 0.89532 1.86739 1.48522 1.51323 1.51422 1.21503 0.83482 0.70760 0.90508 1.90524 1.79216 1.52206 1.22940 1.43553 1.09164 1.69938 1.06538 1.18283 0.96095 0.97595 0.82486 1.20498 0.96101 1.07693 0.93663 1.21000 0.98137 0.99497 0.93261 1.21201 0.91906 1.03730 1.00165 1.20354 0.99876 0.99405 0.90917 1.20032 0.93698 1.00955 0.94849 0.93113 0.91641 0.94392 0.76829 0.76559 0.85096 0.82873 0.83426 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.80 10.36 21.45 0.22 -49.58 15 2 C 0.02 1.13 5.15 84.66 0.44 1.57 15 3 Si 0.95 45.05 29.54 68.60 2.03 47.07 15 4 H -0.29 -13.88 7.11 99.48 0.71 -13.18 15 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 15 6 H -0.26 -11.54 7.11 99.48 0.71 -10.83 15 7 C -0.50 -27.79 7.82 25.60 0.20 -27.59 15 8 H 0.06 3.43 7.75 -2.91 -0.02 3.41 15 9 C 0.06 2.95 0.62 -54.06 -0.03 2.92 15 10 C 0.11 4.67 5.98 71.98 0.43 5.10 15 11 O -0.57 -24.66 12.73 -148.05 -1.89 -26.54 15 12 C 0.55 29.25 6.08 87.94 0.53 29.78 15 13 O -0.57 -34.33 17.66 -2.13 -0.04 -34.37 15 14 N -0.65 -29.81 5.59 -303.22 -1.70 -31.51 15 15 C 0.15 6.47 6.16 38.34 0.24 6.70 15 16 C -0.16 -5.42 10.07 22.47 0.23 -5.19 15 17 C -0.10 -2.94 10.02 22.22 0.22 -2.71 15 18 C -0.15 -4.62 10.07 22.32 0.22 -4.39 15 19 C -0.09 -3.28 10.03 22.17 0.22 -3.06 15 20 C -0.09 -4.09 4.03 -19.70 -0.08 -4.17 15 21 H 0.26 14.25 8.31 -92.71 -0.77 13.48 15 22 H 0.07 2.42 8.14 -2.39 -0.02 2.40 15 23 H 0.04 1.44 8.14 -2.39 -0.02 1.42 15 24 H 0.38 11.17 9.12 -74.06 -0.68 10.49 15 25 H 0.40 16.06 8.96 -92.71 -0.83 15.23 15 26 H 0.13 3.75 8.06 -2.91 -0.02 3.73 15 27 H 0.15 3.20 8.06 -2.91 -0.02 3.18 15 28 H 0.15 3.39 8.06 -2.91 -0.02 3.37 15 29 H 0.12 4.26 8.06 -2.91 -0.02 4.23 15 Total: -1.00 -72.39 255.88 0.94 -71.45 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -0.31 Total: 24.51 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 2.62 Total: -1.04 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -1.47 Total: -81.09 kcal Atomic # 8 Polarization: -58.99 SS G_CDS: -1.92 Total: -60.91 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -72.39 0.94 -71.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238698431.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.042 kcal (2) G-P(sol) polarization free energy of solvation -72.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds