Wall clock time and date at job start Mon Mar 30 2020 02:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99788 * 2 1 4 4 H 1.48499 * 109.47138 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47179 * 300.00388 * 3 2 1 6 6 H 1.48499 * 109.47023 * 60.00327 * 3 2 1 7 7 C 1.37876 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99784 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46936 * 180.02562 * 9 7 2 11 11 O 1.42897 * 110.56175 * 302.66932 * 10 9 7 12 12 C 1.51391 * 110.51222 * 65.34746 * 10 9 7 13 13 O 1.21282 * 126.44423 * 298.62417 * 12 10 9 14 14 N 1.34376 * 107.11119 * 118.64735 * 12 10 9 15 15 C 1.39531 * 112.24928 * 0.02562 * 14 12 10 16 16 C 1.39360 * 130.82723 * 179.97438 * 15 14 12 17 17 C 1.37945 * 120.13197 * 179.97438 * 16 15 14 18 18 C 1.38299 * 120.37586 * 0.02562 * 17 16 15 19 19 C 1.38397 * 119.82304 * 0.02562 * 18 17 16 20 20 C 1.37679 * 119.91897 * 359.96197 * 19 18 17 21 21 H 0.97000 * 119.99993 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47508 * 59.99891 * 9 7 2 23 23 H 1.08997 * 109.46649 * 299.99689 * 9 7 2 24 24 H 0.96706 * 113.99778 * 57.33209 * 11 10 9 25 25 H 0.97003 * 123.87457 * 180.02562 * 14 12 10 26 26 H 1.08001 * 119.93441 * 0.02562 * 16 15 14 27 27 H 1.08002 * 119.80886 * 179.72137 * 17 16 15 28 28 H 1.08000 * 120.08619 * 179.97438 * 18 17 16 29 29 H 1.08001 * 120.03651 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 3.1204 -3.5742 -1.1268 12 6 3.0396 -3.6809 1.2882 13 8 3.7767 -2.8069 1.6931 14 7 2.7749 -4.8483 1.8987 15 6 1.8839 -5.6360 1.1690 16 6 1.3535 -6.8969 1.4355 17 6 0.4752 -7.4807 0.5464 18 6 0.1144 -6.8219 -0.6148 19 6 0.6379 -5.5700 -0.8869 20 6 1.5145 -4.9849 -0.0011 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8902 23 1 0.6249 -2.5570 0.8897 24 1 3.6157 -2.7450 -1.1763 25 1 3.1590 -5.1129 2.7492 26 1 1.6300 -7.4176 2.3404 27 1 0.0707 -8.4600 0.7560 28 1 -0.5733 -7.2836 -1.3079 29 1 0.3582 -5.0523 -1.7925 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238701980.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:06 Heat of formation + Delta-G solvation = -47.809735 kcal Electronic energy + Delta-G solvation = -16172.247389 eV Core-core repulsion = 13446.480197 eV Total energy + Delta-G solvation = -2725.767192 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.19134 -38.03189 -36.04403 -35.16706 -32.90803 -31.32084 -29.46140 -28.61242 -25.89960 -22.92986 -22.24831 -21.16275 -19.92049 -17.62218 -17.08750 -16.32710 -15.71463 -15.55302 -14.71522 -14.48953 -14.09538 -13.75637 -13.51927 -13.30814 -12.65170 -12.24878 -11.82366 -11.69271 -11.39829 -10.98187 -10.87773 -10.64847 -10.50550 -10.30089 -9.83614 -9.34076 -8.78534 -8.56843 -8.42449 -7.74797 -6.07512 -4.10648 1.42487 1.56114 2.97492 3.31341 3.34578 3.38842 3.45709 4.03854 4.42736 4.56803 4.82906 5.02687 5.18952 5.29467 5.41213 5.51473 5.68686 5.77998 6.15278 6.27007 6.33411 6.60488 6.74867 6.90104 7.13348 7.27168 7.36432 7.44990 7.87900 8.18867 8.27591 8.47397 8.93532 9.54373 11.03643 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.036455 B = 0.008199 C = 0.007419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.890955 B = 3414.151588 C = 3772.966628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.896 3.104 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.067 0.933 9 C 0.019 3.981 10 C 0.151 3.849 11 O -0.540 6.540 12 C 0.516 3.484 13 O -0.478 6.478 14 N -0.669 5.669 15 C 0.153 3.847 16 C -0.152 4.152 17 C -0.089 4.089 18 C -0.151 4.151 19 C -0.046 4.046 20 C -0.115 4.115 21 H 0.262 0.738 22 H 0.042 0.958 23 H 0.028 0.972 24 H 0.390 0.610 25 H 0.404 0.596 26 H 0.122 0.878 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.878 -13.543 0.818 13.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.085 0.915 9 C -0.018 4.018 10 C 0.107 3.893 11 O -0.348 6.348 12 C 0.303 3.697 13 O -0.348 6.348 14 N -0.314 5.314 15 C 0.055 3.945 16 C -0.173 4.173 17 C -0.108 4.108 18 C -0.170 4.170 19 C -0.065 4.065 20 C -0.118 4.118 21 H 0.071 0.929 22 H 0.060 0.940 23 H 0.046 0.954 24 H 0.241 0.759 25 H 0.242 0.758 26 H 0.140 0.860 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.944 -13.367 0.838 13.426 hybrid contribution 0.720 1.333 0.766 1.698 sum 1.664 -12.034 1.603 12.254 Atomic orbital electron populations 1.69973 1.06106 1.26815 1.50317 1.24943 0.94817 0.99365 0.94823 0.86454 0.80360 0.83299 0.77491 1.19422 1.20973 1.21029 1.21126 0.93456 0.90153 1.51378 0.91494 1.19589 0.93201 0.89881 0.99134 1.20688 0.90376 0.94695 0.83570 1.86379 1.59389 1.44404 1.44613 1.21630 0.80863 0.79772 0.87446 1.90745 1.36134 1.37910 1.70036 1.43886 1.44936 1.18763 1.23860 1.18209 0.91624 0.92268 0.92380 1.20258 1.01841 0.93516 1.01711 1.20780 0.96711 0.99408 0.93860 1.21022 1.02285 0.95466 0.98240 1.20370 0.93745 0.94152 0.98221 1.19788 1.00725 0.95687 0.95628 0.92879 0.93953 0.95409 0.75883 0.75848 0.86013 0.85647 0.85603 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.73 15 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 15 3 Si 0.90 21.95 29.54 -169.99 -5.02 16.92 15 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.28 -6.96 7.11 56.52 0.40 -6.55 15 7 C -0.52 -14.57 7.72 -34.44 -0.27 -14.84 15 8 H 0.07 1.85 5.97 -52.49 -0.31 1.53 15 9 C 0.02 0.50 4.32 -27.88 -0.12 0.38 15 10 C 0.15 3.30 1.09 -92.37 -0.10 3.20 15 11 O -0.54 -11.51 13.05 -35.23 -0.46 -11.97 15 12 C 0.52 11.18 7.55 -10.83 -0.08 11.10 15 13 O -0.48 -11.64 16.59 5.56 0.09 -11.55 15 14 N -0.67 -11.56 5.88 -9.70 -0.06 -11.62 15 15 C 0.15 2.54 7.11 -83.69 -0.60 1.95 15 16 C -0.15 -1.99 10.07 -39.27 -0.40 -2.38 15 17 C -0.09 -1.05 10.02 -39.67 -0.40 -1.45 15 18 C -0.15 -1.94 10.07 -39.50 -0.40 -2.34 15 19 C -0.05 -0.75 10.04 -39.73 -0.40 -1.15 15 20 C -0.12 -2.17 5.35 -104.37 -0.56 -2.73 15 21 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 22 H 0.04 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 24 H 0.39 7.94 7.50 45.56 0.34 8.28 15 25 H 0.40 5.60 8.96 -40.82 -0.37 5.24 15 26 H 0.12 1.24 8.06 -52.49 -0.42 0.81 15 27 H 0.13 1.06 8.06 -52.49 -0.42 0.64 15 28 H 0.13 1.25 8.06 -52.49 -0.42 0.83 15 29 H 0.13 2.03 8.06 -52.49 -0.42 1.61 15 LS Contribution 257.72 15.07 3.88 3.88 Total: -1.00 -32.51 257.72 -6.24 -38.75 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -2.01 Total: 7.89 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -3.41 Total: -6.59 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.68 Total: -37.35 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.37 Total: -23.52 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.51 -6.24 -38.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238701980.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.055 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds