Wall clock time and date at job start Mon Mar 30 2020 02:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99788 * 2 1 4 4 H 1.48499 * 109.47138 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47179 * 300.00388 * 3 2 1 6 6 H 1.48499 * 109.47023 * 60.00327 * 3 2 1 7 7 C 1.37876 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99784 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46936 * 180.02562 * 9 7 2 11 11 O 1.42897 * 110.56175 * 302.66932 * 10 9 7 12 12 C 1.51391 * 110.51222 * 65.34746 * 10 9 7 13 13 O 1.21282 * 126.44423 * 298.62417 * 12 10 9 14 14 N 1.34376 * 107.11119 * 118.64735 * 12 10 9 15 15 C 1.39531 * 112.24928 * 0.02562 * 14 12 10 16 16 C 1.39360 * 130.82723 * 179.97438 * 15 14 12 17 17 C 1.37945 * 120.13197 * 179.97438 * 16 15 14 18 18 C 1.38299 * 120.37586 * 0.02562 * 17 16 15 19 19 C 1.38397 * 119.82304 * 0.02562 * 18 17 16 20 20 C 1.37679 * 119.91897 * 359.96197 * 19 18 17 21 21 H 0.97000 * 119.99993 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47508 * 59.99891 * 9 7 2 23 23 H 1.08997 * 109.46649 * 299.99689 * 9 7 2 24 24 H 0.96706 * 113.99778 * 57.33209 * 11 10 9 25 25 H 0.97003 * 123.87457 * 180.02562 * 14 12 10 26 26 H 1.08001 * 119.93441 * 0.02562 * 16 15 14 27 27 H 1.08002 * 119.80886 * 179.72137 * 17 16 15 28 28 H 1.08000 * 120.08619 * 179.97438 * 18 17 16 29 29 H 1.08001 * 120.03651 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 3.1204 -3.5742 -1.1268 12 6 3.0396 -3.6809 1.2882 13 8 3.7767 -2.8069 1.6931 14 7 2.7749 -4.8483 1.8987 15 6 1.8839 -5.6360 1.1690 16 6 1.3535 -6.8969 1.4355 17 6 0.4752 -7.4807 0.5464 18 6 0.1144 -6.8219 -0.6148 19 6 0.6379 -5.5700 -0.8869 20 6 1.5145 -4.9849 -0.0011 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8902 23 1 0.6249 -2.5570 0.8897 24 1 3.6157 -2.7450 -1.1763 25 1 3.1590 -5.1129 2.7492 26 1 1.6300 -7.4176 2.3404 27 1 0.0707 -8.4600 0.7560 28 1 -0.5733 -7.2836 -1.3079 29 1 0.3582 -5.0523 -1.7925 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238701980.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:06 Heat of formation + Delta-G solvation = -72.920636 kcal Electronic energy + Delta-G solvation = -16173.336279 eV Core-core repulsion = 13446.480197 eV Total energy + Delta-G solvation = -2726.856082 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.65189 -39.44360 -37.75872 -36.57246 -35.03505 -32.78374 -30.97112 -30.07679 -27.63472 -24.84716 -23.50722 -22.47912 -21.56606 -18.96930 -18.87436 -18.19338 -17.36584 -16.86248 -16.49254 -16.16569 -15.70411 -15.14130 -14.86630 -14.75360 -14.07505 -13.96504 -13.64211 -13.39819 -12.97791 -12.84737 -12.65730 -12.28452 -12.07965 -11.83832 -11.72523 -11.19345 -10.69760 -10.47386 -9.81604 -9.01327 -8.26514 -6.36572 0.16431 0.42655 1.36443 1.37713 1.41434 1.51920 1.96758 2.37354 2.86025 3.05532 3.12273 3.31860 3.70107 4.03429 4.21188 4.34767 4.46644 4.59301 4.67985 5.04969 5.14343 5.20886 5.27567 5.50374 5.60577 5.62097 5.69938 5.82053 6.03079 6.11916 6.54376 6.74151 6.95274 7.32107 8.85442 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.036455 B = 0.008199 C = 0.007419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.890955 B = 3414.151588 C = 3772.966628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.962 3.038 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.281 1.281 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.031 3.969 10 C 0.147 3.853 11 O -0.541 6.541 12 C 0.509 3.491 13 O -0.519 6.519 14 N -0.652 5.652 15 C 0.128 3.872 16 C -0.136 4.136 17 C -0.075 4.075 18 C -0.137 4.137 19 C -0.069 4.069 20 C -0.154 4.154 21 H 0.265 0.735 22 H 0.020 0.980 23 H -0.002 1.002 24 H 0.389 0.611 25 H 0.422 0.578 26 H 0.160 0.840 27 H 0.175 0.825 28 H 0.161 0.839 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.564 -15.999 1.299 16.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.207 1.207 7 C -0.572 4.572 8 H 0.083 0.917 9 C -0.006 4.006 10 C 0.102 3.898 11 O -0.349 6.349 12 C 0.296 3.704 13 O -0.393 6.393 14 N -0.298 5.298 15 C 0.032 3.968 16 C -0.156 4.156 17 C -0.093 4.093 18 C -0.156 4.156 19 C -0.087 4.087 20 C -0.157 4.157 21 H 0.074 0.926 22 H 0.038 0.962 23 H 0.016 0.984 24 H 0.240 0.760 25 H 0.262 0.738 26 H 0.178 0.822 27 H 0.192 0.808 28 H 0.179 0.821 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.613 -15.884 1.320 15.950 hybrid contribution 0.715 1.920 0.587 2.131 sum 1.328 -13.963 1.907 14.155 Atomic orbital electron populations 1.70081 1.07549 1.27877 1.51271 1.25823 0.95709 1.02993 0.94465 0.85430 0.79030 0.78954 0.77868 1.19083 1.19667 1.20672 1.21426 0.93551 0.91367 1.50899 0.91730 1.19307 0.93430 0.91397 0.96471 1.20576 0.89898 0.95247 0.84033 1.86372 1.59301 1.44304 1.44955 1.21527 0.80602 0.80630 0.87680 1.90701 1.38038 1.39601 1.70966 1.43516 1.44576 1.17428 1.24242 1.18513 0.92674 0.93780 0.91816 1.20789 1.00302 0.91524 1.03014 1.21397 0.94857 1.00790 0.92266 1.21469 1.01324 0.93614 0.99178 1.20562 0.94253 0.95935 0.97978 1.19792 1.02856 0.94904 0.98102 0.92569 0.96199 0.98375 0.75987 0.73794 0.82223 0.80754 0.82108 0.86058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.61 13.29 21.45 0.28 -56.32 15 2 C 0.01 0.50 5.46 84.65 0.46 0.97 15 3 Si 0.96 45.92 29.54 68.60 2.03 47.95 15 4 H -0.27 -12.47 7.11 99.48 0.71 -11.77 15 5 H -0.27 -12.33 7.11 99.48 0.71 -11.62 15 6 H -0.28 -13.18 7.11 99.48 0.71 -12.48 15 7 C -0.53 -31.02 7.72 25.60 0.20 -30.82 15 8 H 0.06 3.71 5.97 -2.91 -0.02 3.69 15 9 C 0.03 1.71 4.32 29.85 0.13 1.84 15 10 C 0.15 6.69 1.09 -11.93 -0.01 6.67 15 11 O -0.54 -24.18 13.05 -148.98 -1.94 -26.12 15 12 C 0.51 22.72 7.55 87.94 0.66 23.38 15 13 O -0.52 -26.22 16.59 -3.04 -0.05 -26.27 15 14 N -0.65 -22.23 5.88 -303.21 -1.78 -24.02 15 15 C 0.13 4.08 7.11 38.35 0.27 4.36 15 16 C -0.14 -2.95 10.07 22.47 0.23 -2.72 15 17 C -0.08 -1.35 10.02 22.21 0.22 -1.13 15 18 C -0.14 -3.01 10.07 22.32 0.22 -2.79 15 19 C -0.07 -2.19 10.04 22.18 0.22 -1.96 15 20 C -0.15 -5.83 5.35 -19.70 -0.11 -5.93 15 21 H 0.27 15.15 8.31 -92.71 -0.77 14.38 15 22 H 0.02 1.14 8.14 -2.39 -0.02 1.12 15 23 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 15 24 H 0.39 16.81 7.50 -74.05 -0.56 16.26 15 25 H 0.42 11.19 8.96 -92.71 -0.83 10.36 15 26 H 0.16 2.28 8.06 -2.91 -0.02 2.26 15 27 H 0.18 1.58 8.06 -2.91 -0.02 1.56 15 28 H 0.16 2.40 8.06 -2.91 -0.02 2.37 15 29 H 0.12 3.91 8.06 -2.91 -0.02 3.89 15 Total: -1.00 -73.89 257.72 0.85 -73.04 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -0.19 Total: 19.89 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 2.50 Total: -8.14 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -1.50 Total: -80.34 kcal Atomic # 8 Polarization: -50.40 SS G_CDS: -2.00 Total: -52.40 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -73.89 0.85 -73.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238701980.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.120 kcal (2) G-P(sol) polarization free energy of solvation -73.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds