Wall clock time and date at job start Mon Mar 30 2020 02:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86806 * 120.00255 * 2 1 4 4 H 1.48496 * 109.47299 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46911 * 299.99855 * 3 2 1 6 6 H 1.48504 * 109.47018 * 59.99745 * 3 2 1 7 7 C 1.38888 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99798 * 195.13043 * 7 2 1 9 9 N 1.37138 * 120.00164 * 15.13281 * 7 2 1 10 10 C 1.34551 * 119.76283 * 221.40528 * 9 7 2 11 11 O 1.21282 * 119.61493 * 0.78924 * 10 9 7 12 12 C 1.50500 * 120.77723 * 180.77215 * 10 9 7 13 13 C 1.52909 * 109.89885 * 324.81549 * 12 10 9 14 14 C 1.50688 * 109.51308 * 48.59012 * 13 12 10 15 15 C 1.38102 * 120.13276 * 146.03088 * 14 13 12 16 16 C 1.38209 * 120.10697 * 180.02562 * 15 14 13 17 17 C 1.38834 * 120.10178 * 359.97401 * 16 15 14 18 18 O 1.35902 * 120.00809 * 180.02562 * 17 16 15 19 19 C 1.38562 * 119.97918 * 0.30641 * 17 16 15 20 20 C 1.38862 * 119.84716 * 359.44556 * 19 17 16 21 21 H 0.97004 * 119.99877 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.39617 * 204.68968 * 12 10 9 23 23 H 1.09000 * 109.33147 * 84.90310 * 12 10 9 24 24 H 1.08998 * 109.46713 * 288.58065 * 13 12 10 25 25 H 1.08996 * 109.45878 * 168.59819 * 13 12 10 26 26 H 1.07999 * 119.94860 * 0.04254 * 15 14 13 27 27 H 1.07997 * 119.94913 * 179.97438 * 16 15 14 28 28 H 0.96698 * 113.99527 * 90.00181 * 18 17 16 29 29 H 1.08004 * 120.07994 * 179.70367 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8896 2.3964 -1.2125 6 1 1.8895 2.3965 1.2125 7 6 2.0086 -1.2028 0.0005 8 1 3.0606 -1.2189 0.2447 9 7 1.3586 -2.3700 -0.3090 10 6 1.6129 -3.4846 0.4006 11 8 2.4051 -3.4433 1.3180 12 6 0.9255 -4.7819 0.0696 13 6 -0.5044 -4.5086 -0.3982 14 6 -0.4934 -3.4220 -1.4421 15 6 -1.4051 -3.4476 -2.4791 16 6 -1.3943 -2.4509 -3.4366 17 6 -0.4671 -1.4205 -3.3586 18 8 -0.4585 -0.4412 -4.3008 19 6 0.4531 -1.3941 -2.3231 20 6 0.4376 -2.3934 -1.3590 21 1 -0.4850 0.8401 0.0004 22 1 0.9015 -5.4154 0.9563 23 1 1.4751 -5.2893 -0.7233 24 1 -1.1097 -4.1907 0.4506 25 1 -0.9268 -5.4182 -0.8252 26 1 -2.1280 -4.2476 -2.5419 27 1 -2.1082 -2.4737 -4.2467 28 1 -1.0223 0.3149 -4.0873 29 1 1.1782 -0.5958 -2.2635 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238730152.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:37 Heat of formation + Delta-G solvation = -52.073889 kcal Electronic energy + Delta-G solvation = -16528.436067 eV Core-core repulsion = 13802.483967 eV Total energy + Delta-G solvation = -2725.952099 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.10776 -38.16214 -36.29530 -34.76841 -33.18668 -31.58336 -29.12552 -28.04166 -25.59684 -23.35590 -21.98492 -21.25259 -18.82429 -18.29560 -16.53435 -15.99511 -15.46179 -15.24193 -14.80507 -14.24000 -13.99336 -13.76489 -13.12382 -12.90250 -12.57936 -12.20256 -12.04489 -11.62229 -11.15725 -11.05108 -10.89215 -10.66832 -10.47435 -10.34997 -9.86551 -9.36575 -8.94498 -8.63867 -7.73178 -6.98965 -6.39656 -4.27261 1.99394 2.22404 3.07068 3.17312 3.23081 3.64792 3.97155 4.42330 4.61518 4.95468 5.07117 5.30241 5.40182 5.51965 5.66973 5.87456 5.94401 6.03040 6.21858 6.37215 6.48616 6.64248 6.73459 7.08579 7.26654 7.29479 7.40119 7.48371 8.10297 8.21344 8.33606 8.90667 9.12500 9.64030 10.53408 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.015545 C = 0.009265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.528764 B = 1800.787950 C = 3021.368509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.047 3.953 3 Si 0.919 3.081 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.340 4.340 8 H 0.098 0.902 9 N -0.388 5.388 10 C 0.478 3.522 11 O -0.551 6.551 12 C -0.136 4.136 13 C -0.065 4.065 14 C -0.158 4.158 15 C -0.082 4.082 16 C -0.198 4.198 17 C 0.112 3.888 18 O -0.506 6.506 19 C -0.130 4.130 20 C 0.229 3.771 21 H 0.271 0.729 22 H 0.092 0.908 23 H 0.086 0.914 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.116 0.884 27 H 0.112 0.888 28 H 0.382 0.618 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.416 -3.581 -5.397 7.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.161 4.161 3 Si 0.744 3.256 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.204 1.204 7 C -0.467 4.467 8 H 0.115 0.885 9 N -0.096 5.096 10 C 0.269 3.731 11 O -0.432 6.432 12 C -0.176 4.176 13 C -0.102 4.102 14 C -0.161 4.161 15 C -0.101 4.101 16 C -0.218 4.218 17 C 0.068 3.932 18 O -0.315 6.315 19 C -0.152 4.152 20 C 0.130 3.870 21 H 0.082 0.918 22 H 0.111 0.889 23 H 0.104 0.896 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.134 0.866 27 H 0.130 0.870 28 H 0.236 0.764 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.684 -3.805 -5.087 7.344 hybrid contribution -0.198 1.376 0.253 1.413 sum -3.882 -2.429 -4.835 6.659 Atomic orbital electron populations 1.70001 1.06080 1.28033 1.44029 1.25462 0.95350 1.00110 0.95129 0.85986 0.80313 0.81157 0.78152 1.18826 1.20097 1.20357 1.19476 0.94928 0.82640 1.49678 0.88463 1.41189 1.35095 1.09184 1.24155 1.20606 0.84246 0.86067 0.82204 1.90556 1.36847 1.85952 1.29800 1.21650 0.96559 0.96388 1.03023 1.20247 0.95867 0.96737 0.97342 1.19397 0.98712 0.98604 0.99399 1.20321 0.97703 0.98226 0.93825 1.20906 1.01624 0.97821 1.01422 1.18181 0.95812 0.90174 0.89050 1.84738 1.70852 1.31250 1.44697 1.20893 1.01208 1.00623 0.92442 1.17498 0.90056 0.92740 0.86753 0.91830 0.88909 0.89559 0.90919 0.90663 0.86636 0.86953 0.76373 0.85252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.48 11.46 55.49 0.64 -21.85 15 2 C 0.05 1.23 3.56 -17.49 -0.06 1.17 15 3 Si 0.92 20.15 29.58 -169.99 -5.03 15.12 15 4 H -0.26 -5.78 7.11 56.52 0.40 -5.38 15 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 15 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 7 C -0.34 -9.36 8.15 -14.94 -0.12 -9.49 15 8 H 0.10 2.76 7.79 -52.48 -0.41 2.35 15 9 N -0.39 -10.08 2.74 -59.15 -0.16 -10.24 15 10 C 0.48 11.81 7.41 -11.18 -0.08 11.73 15 11 O -0.55 -15.32 16.94 5.56 0.09 -15.23 15 12 C -0.14 -2.50 6.08 -28.03 -0.17 -2.67 15 13 C -0.06 -1.11 6.00 -27.94 -0.17 -1.28 15 14 C -0.16 -3.17 5.66 -104.40 -0.59 -3.77 15 15 C -0.08 -1.44 9.68 -39.64 -0.38 -1.82 15 16 C -0.20 -3.56 9.98 -39.37 -0.39 -3.96 15 17 C 0.11 2.27 6.70 -39.24 -0.26 2.00 15 18 O -0.51 -9.06 13.50 -19.43 -0.26 -9.32 15 19 C -0.13 -3.00 7.62 -39.23 -0.30 -3.29 15 20 C 0.23 5.41 5.30 -83.77 -0.44 4.96 15 21 H 0.27 6.75 8.31 -40.82 -0.34 6.41 15 22 H 0.09 1.52 8.14 -51.93 -0.42 1.09 15 23 H 0.09 1.42 8.14 -51.93 -0.42 0.99 15 24 H 0.07 1.28 8.14 -51.93 -0.42 0.86 15 25 H 0.07 1.01 8.06 -51.93 -0.42 0.59 15 26 H 0.12 1.62 8.06 -52.49 -0.42 1.20 15 27 H 0.11 1.73 8.06 -52.49 -0.42 1.31 15 28 H 0.38 5.18 9.06 45.56 0.41 5.59 15 29 H 0.13 3.19 6.20 -52.48 -0.33 2.86 15 LS Contribution 251.65 15.07 3.79 3.79 Total: -1.00 -31.50 251.65 -5.90 -37.40 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -1.99 Total: 6.74 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.98 Total: -6.41 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.47 Total: -32.09 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.17 Total: -24.55 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.12 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -31.50 -5.90 -37.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238730152.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.675 kcal (2) G-P(sol) polarization free energy of solvation -31.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds