Wall clock time and date at job start Mon Mar 30 2020 02:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86806 * 120.00255 * 2 1 4 4 H 1.48496 * 109.47299 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46911 * 299.99855 * 3 2 1 6 6 H 1.48504 * 109.47018 * 59.99745 * 3 2 1 7 7 C 1.38888 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99798 * 195.13043 * 7 2 1 9 9 N 1.37138 * 120.00164 * 15.13281 * 7 2 1 10 10 C 1.34551 * 119.76283 * 221.40528 * 9 7 2 11 11 O 1.21282 * 119.61493 * 0.78924 * 10 9 7 12 12 C 1.50500 * 120.77723 * 180.77215 * 10 9 7 13 13 C 1.52909 * 109.89885 * 324.81549 * 12 10 9 14 14 C 1.50688 * 109.51308 * 48.59012 * 13 12 10 15 15 C 1.38102 * 120.13276 * 146.03088 * 14 13 12 16 16 C 1.38209 * 120.10697 * 180.02562 * 15 14 13 17 17 C 1.38834 * 120.10178 * 359.97401 * 16 15 14 18 18 O 1.35902 * 120.00809 * 180.02562 * 17 16 15 19 19 C 1.38562 * 119.97918 * 0.30641 * 17 16 15 20 20 C 1.38862 * 119.84716 * 359.44556 * 19 17 16 21 21 H 0.97004 * 119.99877 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.39617 * 204.68968 * 12 10 9 23 23 H 1.09000 * 109.33147 * 84.90310 * 12 10 9 24 24 H 1.08998 * 109.46713 * 288.58065 * 13 12 10 25 25 H 1.08996 * 109.45878 * 168.59819 * 13 12 10 26 26 H 1.07999 * 119.94860 * 0.04254 * 15 14 13 27 27 H 1.07997 * 119.94913 * 179.97438 * 16 15 14 28 28 H 0.96698 * 113.99527 * 90.00181 * 18 17 16 29 29 H 1.08004 * 120.07994 * 179.70367 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8896 2.3964 -1.2125 6 1 1.8895 2.3965 1.2125 7 6 2.0086 -1.2028 0.0005 8 1 3.0606 -1.2189 0.2447 9 7 1.3586 -2.3700 -0.3090 10 6 1.6129 -3.4846 0.4006 11 8 2.4051 -3.4433 1.3180 12 6 0.9255 -4.7819 0.0696 13 6 -0.5044 -4.5086 -0.3982 14 6 -0.4934 -3.4220 -1.4421 15 6 -1.4051 -3.4476 -2.4791 16 6 -1.3943 -2.4509 -3.4366 17 6 -0.4671 -1.4205 -3.3586 18 8 -0.4585 -0.4412 -4.3008 19 6 0.4531 -1.3941 -2.3231 20 6 0.4376 -2.3934 -1.3590 21 1 -0.4850 0.8401 0.0004 22 1 0.9015 -5.4154 0.9563 23 1 1.4751 -5.2893 -0.7233 24 1 -1.1097 -4.1907 0.4506 25 1 -0.9268 -5.4182 -0.8252 26 1 -2.1280 -4.2476 -2.5419 27 1 -2.1082 -2.4737 -4.2467 28 1 -1.0223 0.3149 -4.0873 29 1 1.1782 -0.5958 -2.2635 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238730152.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:37 Heat of formation + Delta-G solvation = -74.640272 kcal Electronic energy + Delta-G solvation = -16529.414618 eV Core-core repulsion = 13802.483967 eV Total energy + Delta-G solvation = -2726.930651 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.78851 -39.78310 -37.91914 -36.52612 -34.76449 -33.44034 -30.72835 -29.58360 -27.50203 -24.88758 -23.61417 -22.87872 -20.41565 -20.03935 -18.23719 -17.74713 -17.14501 -16.88796 -16.49972 -15.83235 -15.63245 -15.45911 -14.79899 -14.51971 -14.00771 -13.85319 -13.52254 -13.43287 -12.87214 -12.78547 -12.56730 -12.22668 -12.17431 -11.82080 -11.39060 -11.23168 -10.75196 -10.46992 -9.26828 -8.81398 -8.28534 -6.32034 0.44789 0.65905 1.28965 1.33078 1.45996 1.90989 2.17447 2.72803 2.84884 3.20621 3.54568 3.81067 4.00156 4.07216 4.27720 4.45837 4.54796 4.67105 4.85246 4.93335 5.08821 5.16008 5.23471 5.34280 5.55656 5.71858 5.73630 6.02165 6.13041 6.36994 6.94854 6.95861 7.26454 7.75348 8.56170 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.015545 C = 0.009265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.528764 B = 1800.787950 C = 3021.368509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.020 3.980 3 Si 0.977 3.023 4 H -0.270 1.270 5 H -0.260 1.260 6 H -0.272 1.272 7 C -0.376 4.376 8 H 0.068 0.932 9 N -0.404 5.404 10 C 0.454 3.546 11 O -0.606 6.606 12 C -0.125 4.125 13 C -0.059 4.059 14 C -0.165 4.165 15 C -0.069 4.069 16 C -0.185 4.185 17 C 0.107 3.893 18 O -0.510 6.510 19 C -0.157 4.157 20 C 0.193 3.807 21 H 0.276 0.724 22 H 0.113 0.887 23 H 0.109 0.891 24 H 0.066 0.934 25 H 0.129 0.871 26 H 0.167 0.833 27 H 0.149 0.851 28 H 0.401 0.599 29 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.946 -4.759 -7.072 10.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.186 4.186 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.184 1.184 6 H -0.197 1.197 7 C -0.503 4.503 8 H 0.086 0.914 9 N -0.113 5.113 10 C 0.247 3.753 11 O -0.491 6.491 12 C -0.165 4.165 13 C -0.096 4.096 14 C -0.168 4.168 15 C -0.087 4.087 16 C -0.204 4.204 17 C 0.062 3.938 18 O -0.322 6.322 19 C -0.179 4.179 20 C 0.096 3.904 21 H 0.086 0.914 22 H 0.132 0.868 23 H 0.127 0.873 24 H 0.084 0.916 25 H 0.147 0.853 26 H 0.184 0.816 27 H 0.167 0.833 28 H 0.258 0.742 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.263 -4.976 -6.810 10.505 hybrid contribution 0.519 1.753 0.650 1.940 sum -5.744 -3.223 -6.159 9.018 Atomic orbital electron populations 1.70056 1.06958 1.28885 1.44101 1.26100 0.96120 1.02362 0.94015 0.85146 0.78728 0.77462 0.78778 1.19458 1.18411 1.19701 1.19393 0.94280 0.84702 1.51938 0.91395 1.41376 1.35626 1.09055 1.25273 1.21832 0.83995 0.87972 0.81531 1.90498 1.39371 1.87028 1.32187 1.21671 0.97144 0.92864 1.04772 1.20365 0.94775 0.97962 0.96526 1.19879 0.97936 0.98146 1.00824 1.20878 0.97094 0.98848 0.91893 1.21355 1.00685 0.96364 1.02031 1.18326 0.95597 0.91441 0.88421 1.84684 1.71730 1.31857 1.43931 1.20863 1.02221 1.00377 0.94450 1.17894 0.91033 0.94762 0.86745 0.91434 0.86820 0.87294 0.91558 0.85263 0.81600 0.83334 0.74169 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.98 11.46 21.65 0.25 -46.73 15 2 C 0.02 1.09 3.56 84.91 0.30 1.40 15 3 Si 0.98 42.76 29.58 68.60 2.03 44.79 15 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 5 H -0.26 -10.60 7.11 99.48 0.71 -9.89 15 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 15 7 C -0.38 -22.00 8.15 84.02 0.68 -21.32 15 8 H 0.07 4.21 7.79 -2.91 -0.02 4.19 15 9 N -0.40 -21.89 2.74 -459.58 -1.26 -23.15 15 10 C 0.45 23.17 7.41 87.63 0.65 23.82 15 11 O -0.61 -35.61 16.94 -3.03 -0.05 -35.66 15 12 C -0.12 -4.37 6.08 29.75 0.18 -4.19 15 13 C -0.06 -1.82 6.00 29.81 0.18 -1.64 15 14 C -0.17 -6.18 5.66 -19.72 -0.11 -6.29 15 15 C -0.07 -2.07 9.68 22.23 0.22 -1.85 15 16 C -0.18 -5.85 9.98 22.41 0.22 -5.63 15 17 C 0.11 4.12 6.70 22.49 0.15 4.27 15 18 O -0.51 -17.33 13.50 -92.45 -1.25 -18.58 15 19 C -0.16 -7.36 7.62 22.50 0.17 -7.19 15 20 C 0.19 9.16 5.30 38.22 0.20 9.36 15 21 H 0.28 13.87 8.31 -92.70 -0.77 13.10 15 22 H 0.11 3.47 8.14 -2.39 -0.02 3.45 15 23 H 0.11 3.31 8.14 -2.39 -0.02 3.29 15 24 H 0.07 2.14 8.14 -2.39 -0.02 2.12 15 25 H 0.13 2.60 8.06 -2.39 -0.02 2.58 15 26 H 0.17 3.36 8.06 -2.91 -0.02 3.34 15 27 H 0.15 3.66 8.06 -2.91 -0.02 3.64 15 28 H 0.40 10.09 9.06 -74.06 -0.67 9.42 15 29 H 0.10 5.06 6.20 -2.91 -0.02 5.04 15 Total: -1.00 -73.50 251.65 3.08 -70.42 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.51 Total: 18.18 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 2.85 Total: -9.26 kcal Atomic # 7 Polarization: -68.87 SS G_CDS: -1.01 Total: -69.88 kcal Atomic # 8 Polarization: -52.94 SS G_CDS: -1.30 Total: -54.24 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -73.50 3.08 -70.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238730152.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.221 kcal (2) G-P(sol) polarization free energy of solvation -73.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds