Wall clock time and date at job start Mon Mar 30 2020 02:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86807 * 120.00146 * 2 1 4 4 H 1.48493 * 109.47272 * 240.00037 * 3 2 1 5 5 H 1.48496 * 109.46670 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47126 * 119.99783 * 3 2 1 7 7 C 1.38653 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00026 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99904 * 0.02562 * 7 2 1 10 10 C 1.35758 * 116.99914 * 185.05972 * 9 7 2 11 11 C 1.38902 * 119.91495 * 354.38449 * 10 9 7 12 12 C 1.38184 * 120.07565 * 179.97438 * 11 10 9 13 13 C 1.37858 * 120.21690 * 359.97438 * 12 11 10 14 14 C 1.40163 * 120.24020 * 0.02652 * 13 12 11 15 15 C 1.38906 * 119.91382 * 174.36090 * 10 9 7 16 16 C 1.50968 * 130.44304 * 0.02562 * 15 10 9 17 17 C 1.53476 * 106.38548 * 180.02562 * 16 15 10 18 18 C 1.47754 * 129.96471 * 179.97438 * 14 13 12 19 19 N 1.29328 * 125.99275 * 359.97438 * 18 14 13 20 20 O 1.41606 * 119.99852 * 179.97438 * 19 18 14 21 21 H 0.97003 * 119.99931 * 359.97438 * 1 2 3 22 22 H 1.07996 * 119.95651 * 359.97303 * 11 10 9 23 23 H 1.07996 * 119.89401 * 180.02562 * 12 11 10 24 24 H 1.08004 * 119.88116 * 179.75153 * 13 12 11 25 25 H 1.09003 * 110.07656 * 299.23408 * 16 15 10 26 26 H 1.09008 * 110.07597 * 60.77460 * 16 15 10 27 27 H 1.08997 * 110.28118 * 118.96022 * 17 16 15 28 28 H 1.09001 * 110.27722 * 240.95316 * 17 16 15 29 29 H 0.96701 * 113.99361 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6964 -1.2124 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1078 11 6 3.4572 -3.4359 0.0933 12 6 4.2089 -4.5902 0.2028 13 6 3.5867 -5.8141 0.3272 14 6 2.1876 -5.8964 0.3430 15 6 1.4330 -4.7327 0.2321 16 6 -0.0370 -5.0738 0.2737 17 6 -0.1236 -6.5986 0.4249 18 6 1.3076 -7.0771 0.4641 19 7 1.6955 -8.3052 0.5823 20 8 0.7380 -9.3428 0.6903 21 1 -0.4850 0.8401 0.0004 22 1 3.9488 -2.4792 -0.0035 23 1 5.2873 -4.5334 0.1917 24 1 4.1795 -6.7133 0.4083 25 1 -0.5103 -4.5862 1.1261 26 1 -0.5200 -4.7613 -0.6522 27 1 -0.6344 -6.8580 1.3522 28 1 -0.6454 -7.0337 -0.4275 29 1 1.1230 -10.2259 0.7751 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252449713.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:12 Heat of formation + Delta-G solvation = 2.132343 kcal Electronic energy + Delta-G solvation = -15504.154142 eV Core-core repulsion = 12780.552602 eV Total energy + Delta-G solvation = -2723.601541 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.72861 -37.69151 -36.24296 -34.63133 -32.43301 -31.58978 -28.88077 -28.32933 -25.46329 -24.38970 -21.91606 -20.64231 -19.69566 -17.63619 -17.22913 -16.22364 -15.33715 -15.13422 -14.75696 -14.46451 -13.93629 -13.76000 -13.59379 -13.10151 -12.78559 -12.07660 -11.76071 -11.53115 -11.52144 -11.19497 -11.12012 -10.98268 -10.60953 -10.51335 -9.69302 -9.67349 -9.47378 -8.88774 -7.89178 -7.29181 -6.51054 -4.09723 1.27555 2.20652 2.85268 3.09306 3.12422 3.13683 3.16491 3.92233 4.45237 4.66652 5.00895 5.08087 5.24104 5.38892 5.49551 5.61514 5.80568 5.95619 6.08303 6.18543 6.35079 6.41039 6.48410 6.71018 6.89779 6.97260 7.15098 7.23027 7.27691 7.63563 7.89587 7.92088 8.94106 9.61520 10.66366 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.046130 B = 0.006288 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.835535 B = 4451.597282 C = 5033.210925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.042 3.958 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.171 6.171 10 C 0.158 3.842 11 C -0.213 4.213 12 C -0.081 4.081 13 C -0.162 4.162 14 C -0.037 4.037 15 C -0.127 4.127 16 C -0.065 4.065 17 C -0.113 4.113 18 C 0.191 3.809 19 N -0.341 5.341 20 O -0.418 6.418 21 H 0.271 0.729 22 H 0.134 0.866 23 H 0.116 0.884 24 H 0.112 0.888 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 -8.802 0.676 9.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.075 6.075 10 C 0.105 3.895 11 C -0.233 4.233 12 C -0.099 4.099 13 C -0.182 4.182 14 C -0.038 4.038 15 C -0.131 4.131 16 C -0.102 4.102 17 C -0.152 4.152 18 C 0.003 3.997 19 N -0.085 5.085 20 O -0.323 6.323 21 H 0.081 0.919 22 H 0.152 0.848 23 H 0.134 0.866 24 H 0.130 0.870 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 2.923 -8.762 0.668 9.261 hybrid contribution 0.134 0.523 0.029 0.540 sum 3.057 -8.240 0.698 8.816 Atomic orbital electron populations 1.70021 1.05967 1.27915 1.45471 1.25282 0.95841 0.98823 0.96387 0.85783 0.78739 0.79712 0.79243 1.19446 1.20262 1.19445 1.21301 0.91841 0.80758 1.53126 0.88994 1.83989 1.34067 1.11228 1.78171 1.18709 0.89985 0.86859 0.93996 1.21234 0.93240 0.99350 1.09507 1.20616 0.98832 0.91818 0.98615 1.20494 0.92155 0.97462 1.08117 1.18299 0.92495 0.88961 1.04080 1.19459 0.95256 0.90593 1.07749 1.20505 0.93278 0.93025 1.03436 1.21429 0.93572 0.96898 1.03331 1.23524 0.95528 0.89948 0.90669 1.76538 1.16675 0.96927 1.18360 1.88397 1.31299 1.17551 1.95056 0.91869 0.84837 0.86624 0.86962 0.89964 0.90027 0.89293 0.89298 0.75486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.34 13.67 55.48 0.76 -23.59 15 2 C 0.04 1.10 5.49 -17.52 -0.10 1.01 15 3 Si 0.94 19.82 29.55 -169.99 -5.02 14.80 15 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 15 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15 7 C -0.39 -10.56 9.48 30.89 0.29 -10.27 15 8 H 0.09 2.26 5.19 -52.48 -0.27 1.98 15 9 O -0.17 -4.66 9.70 0.03 0.00 -4.66 15 10 C 0.16 3.69 6.65 -39.09 -0.26 3.43 15 11 C -0.21 -4.43 9.16 -39.36 -0.36 -4.79 15 12 C -0.08 -1.44 10.02 -39.74 -0.40 -1.84 15 13 C -0.16 -2.92 10.10 -39.00 -0.39 -3.31 15 14 C -0.04 -0.70 6.11 -104.95 -0.64 -1.35 15 15 C -0.13 -2.65 6.18 -103.91 -0.64 -3.29 15 16 C -0.07 -1.18 6.73 -27.51 -0.19 -1.37 15 17 C -0.11 -1.80 6.40 -27.51 -0.18 -1.97 15 18 C 0.19 3.40 7.46 -79.63 -0.59 2.80 15 19 N -0.34 -5.80 12.20 35.18 0.43 -5.37 15 20 O -0.42 -5.95 14.58 -11.47 -0.17 -6.11 15 21 H 0.27 7.08 8.31 -40.82 -0.34 6.74 15 22 H 0.13 2.72 5.62 -52.49 -0.29 2.42 15 23 H 0.12 1.68 8.06 -52.49 -0.42 1.26 15 24 H 0.11 1.81 8.06 -52.48 -0.42 1.39 15 25 H 0.08 1.48 8.14 -51.93 -0.42 1.06 15 26 H 0.08 1.46 8.14 -51.92 -0.42 1.04 15 27 H 0.09 1.30 8.14 -51.93 -0.42 0.88 15 28 H 0.09 1.30 8.14 -51.93 -0.42 0.87 15 29 H 0.40 3.54 9.28 45.56 0.42 3.97 15 LS Contribution 261.88 15.07 3.95 3.95 Total: -1.00 -30.54 261.88 -5.33 -35.87 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -1.82 Total: 6.06 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -3.45 Total: -20.95 kcal Atomic # 7 Polarization: -30.14 SS G_CDS: 1.19 Total: -28.95 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.17 Total: -10.77 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.54 -5.33 -35.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252449713.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.000 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds