Wall clock time and date at job start Mon Mar 30 2020 02:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86807 * 120.00146 * 2 1 4 4 H 1.48493 * 109.47272 * 240.00037 * 3 2 1 5 5 H 1.48496 * 109.46670 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47126 * 119.99783 * 3 2 1 7 7 C 1.38653 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00026 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99904 * 0.02562 * 7 2 1 10 10 C 1.35758 * 116.99914 * 185.05972 * 9 7 2 11 11 C 1.38902 * 119.91495 * 354.38449 * 10 9 7 12 12 C 1.38184 * 120.07565 * 179.97438 * 11 10 9 13 13 C 1.37858 * 120.21690 * 359.97438 * 12 11 10 14 14 C 1.40163 * 120.24020 * 0.02652 * 13 12 11 15 15 C 1.38906 * 119.91382 * 174.36090 * 10 9 7 16 16 C 1.50968 * 130.44304 * 0.02562 * 15 10 9 17 17 C 1.53476 * 106.38548 * 180.02562 * 16 15 10 18 18 C 1.47754 * 129.96471 * 179.97438 * 14 13 12 19 19 N 1.29328 * 125.99275 * 359.97438 * 18 14 13 20 20 O 1.41606 * 119.99852 * 179.97438 * 19 18 14 21 21 H 0.97003 * 119.99931 * 359.97438 * 1 2 3 22 22 H 1.07996 * 119.95651 * 359.97303 * 11 10 9 23 23 H 1.07996 * 119.89401 * 180.02562 * 12 11 10 24 24 H 1.08004 * 119.88116 * 179.75153 * 13 12 11 25 25 H 1.09003 * 110.07656 * 299.23408 * 16 15 10 26 26 H 1.09008 * 110.07597 * 60.77460 * 16 15 10 27 27 H 1.08997 * 110.28118 * 118.96022 * 17 16 15 28 28 H 1.09001 * 110.27722 * 240.95316 * 17 16 15 29 29 H 0.96701 * 113.99361 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6964 -1.2124 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1078 11 6 3.4572 -3.4359 0.0933 12 6 4.2089 -4.5902 0.2028 13 6 3.5867 -5.8141 0.3272 14 6 2.1876 -5.8964 0.3430 15 6 1.4330 -4.7327 0.2321 16 6 -0.0370 -5.0738 0.2737 17 6 -0.1236 -6.5986 0.4249 18 6 1.3076 -7.0771 0.4641 19 7 1.6955 -8.3052 0.5823 20 8 0.7380 -9.3428 0.6903 21 1 -0.4850 0.8401 0.0004 22 1 3.9488 -2.4792 -0.0035 23 1 5.2873 -4.5334 0.1917 24 1 4.1795 -6.7133 0.4083 25 1 -0.5103 -4.5862 1.1261 26 1 -0.5200 -4.7613 -0.6522 27 1 -0.6344 -6.8580 1.3522 28 1 -0.6454 -7.0337 -0.4275 29 1 1.1230 -10.2259 0.7751 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252449713.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:12 Heat of formation + Delta-G solvation = -18.712819 kcal Electronic energy + Delta-G solvation = -15505.058057 eV Core-core repulsion = 12780.552602 eV Total energy + Delta-G solvation = -2724.505455 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.30142 -39.31364 -37.62482 -36.05471 -34.30938 -33.00299 -30.41545 -29.86837 -27.33205 -25.84943 -23.46510 -22.18627 -21.22720 -19.35061 -18.82557 -17.56052 -16.91244 -16.53444 -16.35768 -16.06000 -15.52331 -15.34836 -15.22287 -14.40674 -14.38698 -13.63147 -13.49308 -13.09824 -12.89734 -12.75456 -12.57184 -12.54705 -12.18628 -12.08354 -11.27383 -11.04967 -10.98225 -10.74051 -9.36180 -8.99155 -8.44367 -6.11805 -0.20270 0.63887 1.36996 1.38762 1.51503 1.54073 1.94322 2.21341 2.82521 3.14316 3.28830 3.51221 3.74008 3.97638 4.19484 4.23481 4.31767 4.52776 4.63200 4.76822 4.82219 5.01413 5.01568 5.16123 5.25122 5.46198 5.59248 5.65627 5.89968 6.01732 6.07924 6.79389 7.00229 7.78143 8.77889 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.046130 B = 0.006288 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.835535 B = 4451.597282 C = 5033.210925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.019 4.019 3 Si 1.015 2.985 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.415 4.415 8 H 0.105 0.895 9 O -0.220 6.220 10 C 0.122 3.878 11 C -0.219 4.219 12 C -0.073 4.073 13 C -0.147 4.147 14 C -0.041 4.041 15 C -0.147 4.147 16 C -0.066 4.066 17 C -0.100 4.100 18 C 0.175 3.825 19 N -0.339 5.339 20 O -0.410 6.410 21 H 0.272 0.728 22 H 0.133 0.867 23 H 0.158 0.842 24 H 0.141 0.859 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.950 -10.650 0.895 11.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.217 4.217 3 Si 0.835 3.165 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.491 4.491 8 H 0.123 0.877 9 O -0.127 6.127 10 C 0.072 3.928 11 C -0.239 4.239 12 C -0.091 4.091 13 C -0.167 4.167 14 C -0.042 4.042 15 C -0.150 4.150 16 C -0.103 4.103 17 C -0.139 4.139 18 C -0.013 4.013 19 N -0.080 5.080 20 O -0.323 6.323 21 H 0.081 0.919 22 H 0.150 0.850 23 H 0.176 0.824 24 H 0.159 0.841 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 4.854 -10.673 0.890 11.759 hybrid contribution -0.345 0.664 -0.009 0.748 sum 4.508 -10.009 0.880 11.013 Atomic orbital electron populations 1.70169 1.07965 1.28835 1.48484 1.26519 0.96779 1.02574 0.95819 0.84686 0.77421 0.74457 0.79944 1.18121 1.19952 1.18189 1.21823 0.92689 0.81343 1.53265 0.87742 1.83961 1.35497 1.12202 1.81018 1.19274 0.91345 0.86762 0.95441 1.21435 0.92553 1.00666 1.09259 1.21026 1.00759 0.90484 0.96791 1.20955 0.91961 0.98595 1.05226 1.18582 0.93254 0.89160 1.03222 1.19805 0.96947 0.90500 1.07755 1.20526 0.91931 0.95032 1.02829 1.21363 0.93206 0.94590 1.04739 1.23372 0.95694 0.89946 0.92298 1.76372 1.17912 0.97112 1.16628 1.88390 1.30907 1.18403 1.94559 0.91869 0.84950 0.82433 0.84098 0.90750 0.90607 0.87819 0.87741 0.72712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.62 13.67 21.61 0.30 -54.33 15 2 C -0.02 -1.03 5.49 84.83 0.47 -0.57 15 3 Si 1.02 41.40 29.55 68.60 2.03 43.43 15 4 H -0.26 -9.81 7.11 99.48 0.71 -9.11 15 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 15 6 H -0.26 -9.86 7.11 99.48 0.71 -9.16 15 7 C -0.42 -23.17 9.48 67.92 0.64 -22.53 15 8 H 0.11 5.27 5.19 -2.91 -0.02 5.25 15 9 O -0.22 -12.68 9.70 -22.82 -0.22 -12.90 15 10 C 0.12 5.88 6.65 22.59 0.15 6.03 15 11 C -0.22 -9.05 9.16 22.42 0.21 -8.84 15 12 C -0.07 -2.40 10.02 22.17 0.22 -2.18 15 13 C -0.15 -4.85 10.10 22.65 0.23 -4.63 15 14 C -0.04 -1.50 6.11 -20.08 -0.12 -1.62 15 15 C -0.15 -6.19 6.18 -19.40 -0.12 -6.31 15 16 C -0.07 -2.43 6.73 30.09 0.20 -2.23 15 17 C -0.10 -3.02 6.40 30.09 0.19 -2.83 15 18 C 0.18 5.81 7.46 45.53 0.34 6.15 15 19 N -0.34 -10.35 12.20 -42.61 -0.52 -10.87 15 20 O -0.41 -10.08 14.58 -38.80 -0.57 -10.64 15 21 H 0.27 14.95 8.31 -92.71 -0.77 14.17 15 22 H 0.13 5.39 5.62 -2.91 -0.02 5.38 15 23 H 0.16 3.86 8.06 -2.91 -0.02 3.84 15 24 H 0.14 3.88 8.06 -2.91 -0.02 3.86 15 25 H 0.07 2.81 8.14 -2.39 -0.02 2.79 15 26 H 0.08 2.83 8.14 -2.38 -0.02 2.81 15 27 H 0.10 2.82 8.14 -2.39 -0.02 2.80 15 28 H 0.10 2.82 8.14 -2.39 -0.02 2.80 15 29 H 0.42 5.72 9.28 -74.06 -0.69 5.03 15 Total: -1.00 -68.52 261.88 3.93 -64.59 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.51 Total: 20.28 kcal Atomic # 6 Polarization: -41.96 SS G_CDS: 2.41 Total: -39.55 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: -0.22 Total: -65.20 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.79 Total: -23.54 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -68.52 3.93 -64.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252449713.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.874 kcal (2) G-P(sol) polarization free energy of solvation -68.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds