Wall clock time and date at job start Mon Mar 30 2020 02:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00073 * 2 1 4 4 H 1.48498 * 109.47029 * 270.00157 * 3 2 1 5 5 H 1.48504 * 109.47122 * 29.99852 * 3 2 1 6 6 H 1.48501 * 109.47212 * 149.99847 * 3 2 1 7 7 C 1.37878 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99981 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00205 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.26620 * 52.66712 * 9 7 2 11 11 N 1.46537 * 110.77610 * 290.77649 * 9 7 2 12 12 C 1.39576 * 110.08578 * 241.39552 * 11 9 7 13 13 C 1.39680 * 129.32312 * 179.33953 * 12 11 9 14 14 C 1.37830 * 120.28147 * 179.97438 * 13 12 11 15 15 C 1.38302 * 120.23112 * 0.02562 * 14 13 12 16 16 C 1.38233 * 119.83260 * 359.97337 * 15 14 13 17 17 C 1.38172 * 120.15174 * 0.28121 * 16 15 14 18 18 C 1.51218 * 130.98509 * 179.69600 * 17 16 15 19 19 H 1.09004 * 110.42432 * 61.25722 * 18 17 16 20 20 C 1.50698 * 110.42855 * 298.78666 * 18 17 16 21 21 O 1.20827 * 119.99466 * 332.59813 * 20 18 17 22 22 O 1.34228 * 120.00489 * 152.59298 * 20 18 17 23 23 H 0.96996 * 119.99976 * 0.02562 * 1 2 3 24 24 H 0.97002 * 124.96085 * 60.69594 * 11 9 7 25 25 H 1.07996 * 119.85894 * 359.95610 * 13 12 11 26 26 H 1.07999 * 119.88600 * 179.97438 * 14 13 12 27 27 H 1.07998 * 120.08384 * 180.02562 * 15 14 13 28 28 H 1.08000 * 119.92516 * 179.97438 * 16 15 14 29 29 H 0.96700 * 116.99829 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.5249 -2.5159 -0.8133 11 7 0.5708 -2.7066 1.2807 12 6 1.0552 -3.8602 1.8994 13 6 0.7000 -4.4213 3.1282 14 6 1.3048 -5.5807 3.5636 15 6 2.2689 -6.1973 2.7869 16 6 2.6259 -5.6481 1.5696 17 6 2.0262 -4.4831 1.1312 18 6 2.2288 -3.6783 -0.1329 19 1 1.9835 -4.2783 -1.0093 20 6 3.6482 -3.1789 -0.2167 21 8 4.2830 -2.9909 0.7940 22 8 4.2072 -2.9431 -1.4140 23 1 -0.4850 0.8400 -0.0004 24 1 -0.1091 -2.1217 1.6501 25 1 -0.0516 -3.9445 3.7398 26 1 1.0255 -6.0088 4.5150 27 1 2.7410 -7.1059 3.1303 28 1 3.3789 -6.1281 0.9621 29 1 5.1200 -2.6240 -1.4171 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259664751.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:14 Heat of formation + Delta-G solvation = -58.967446 kcal Electronic energy + Delta-G solvation = -16323.273345 eV Core-core repulsion = 13597.022318 eV Total energy + Delta-G solvation = -2726.251026 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.25006 -38.58373 -35.69536 -35.17446 -32.60633 -31.40339 -28.78654 -28.27798 -25.35830 -22.83064 -21.65565 -20.80416 -19.59261 -17.62569 -16.80713 -16.56166 -15.52335 -15.25378 -14.79837 -14.35315 -14.31335 -13.18188 -13.09624 -12.83690 -12.34682 -12.13940 -11.76313 -11.68311 -11.09785 -11.00741 -10.86672 -10.60271 -10.27663 -10.19856 -9.85099 -9.68192 -9.02455 -8.78313 -8.16873 -6.51572 -6.18350 -4.45532 2.03702 2.37954 3.12748 3.16871 3.23693 3.29795 3.86141 4.22144 4.44968 4.66879 5.17914 5.26067 5.57370 5.65809 5.77781 5.90817 6.07505 6.19650 6.24595 6.51247 6.66829 6.99251 7.14153 7.20190 7.23412 7.27053 7.53696 7.62389 7.82836 8.19488 8.60391 8.76807 9.02949 9.26608 10.71548 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.027954 B = 0.010310 C = 0.008412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.409989 B = 2715.287668 C = 3327.689863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.078 3.922 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.279 3.721 10 H 0.061 0.939 11 N -0.705 5.705 12 C 0.230 3.770 13 C -0.210 4.210 14 C -0.067 4.067 15 C -0.208 4.208 16 C -0.044 4.044 17 C -0.177 4.177 18 C -0.037 4.037 19 H 0.097 0.903 20 C 0.516 3.484 21 O -0.520 6.520 22 O -0.520 6.520 23 H 0.268 0.732 24 H 0.411 0.589 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.314 -7.385 0.559 7.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.127 4.127 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.177 3.823 10 H 0.079 0.921 11 N -0.329 5.329 12 C 0.118 3.882 13 C -0.234 4.234 14 C -0.086 4.086 15 C -0.229 4.229 16 C -0.063 4.063 17 C -0.183 4.183 18 C -0.057 4.057 19 H 0.115 0.885 20 C 0.359 3.641 21 O -0.407 6.407 22 O -0.331 6.331 23 H 0.078 0.922 24 H 0.249 0.751 25 H 0.127 0.873 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.124 0.876 29 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 1.879 -7.190 0.648 7.459 hybrid contribution 0.791 1.541 0.260 1.752 sum 2.671 -5.648 0.909 6.314 Atomic orbital electron populations 1.69881 1.05999 1.27701 1.48530 1.25007 0.94946 0.99668 0.93123 0.86467 0.80108 0.82417 0.78455 1.20121 1.20864 1.19600 1.21536 0.93145 0.90287 1.52544 0.91476 1.18992 0.89155 0.90279 0.83881 0.92098 1.46073 1.42002 1.22887 1.21940 1.18624 0.91113 0.87024 0.91419 1.20220 1.06611 0.99869 0.96654 1.20587 0.95385 0.94427 0.98195 1.20485 1.03361 1.02540 0.96548 1.20161 0.97018 0.93633 0.95521 1.19342 1.02977 0.98347 0.97591 1.20525 0.89838 0.98023 0.97284 0.88499 1.22875 0.88705 0.72352 0.80134 1.90646 1.63801 1.49401 1.36896 1.84588 1.33688 1.79404 1.35404 0.92238 0.75067 0.87267 0.87073 0.87171 0.87587 0.74705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.47 12.97 55.43 0.72 -22.75 15 2 C 0.08 2.04 5.45 -17.82 -0.10 1.95 15 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 15 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 15 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 7 C -0.54 -14.17 8.20 -34.44 -0.28 -14.45 15 8 H 0.07 1.83 5.23 -52.49 -0.27 1.56 15 9 C 0.28 6.69 3.39 -68.67 -0.23 6.46 15 10 H 0.06 1.52 8.14 -51.93 -0.42 1.10 15 11 N -0.70 -16.23 6.09 -52.79 -0.32 -16.55 15 12 C 0.23 4.94 7.03 -83.66 -0.59 4.35 15 13 C -0.21 -3.94 10.07 -39.19 -0.39 -4.33 15 14 C -0.07 -1.12 10.02 -39.71 -0.40 -1.52 15 15 C -0.21 -3.48 10.06 -39.56 -0.40 -3.88 15 16 C -0.04 -0.82 10.04 -39.61 -0.40 -1.22 15 17 C -0.18 -3.70 5.00 -104.26 -0.52 -4.22 15 18 C -0.04 -0.79 3.53 -92.28 -0.33 -1.11 15 19 H 0.10 1.81 8.14 -51.93 -0.42 1.39 15 20 C 0.52 11.12 4.80 36.00 0.17 11.29 15 21 O -0.52 -12.62 16.69 -18.75 -0.31 -12.93 15 22 O -0.52 -9.37 13.39 -39.25 -0.53 -9.90 15 23 H 0.27 6.79 8.31 -40.82 -0.34 6.45 15 24 H 0.41 9.51 8.72 -40.82 -0.36 9.15 15 25 H 0.11 1.86 8.06 -52.49 -0.42 1.43 15 26 H 0.11 1.49 8.06 -52.49 -0.42 1.07 15 27 H 0.11 1.52 8.06 -52.49 -0.42 1.10 15 28 H 0.11 1.73 8.06 -52.49 -0.42 1.30 15 29 H 0.40 5.26 9.10 45.56 0.41 5.68 15 LS Contribution 257.45 15.07 3.88 3.88 Total: -1.00 -29.93 257.45 -6.93 -36.86 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -1.89 Total: 12.30 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -3.46 Total: -6.67 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.40 Total: -39.29 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.84 Total: -22.83 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.93 -6.93 -36.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259664751.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.106 kcal (2) G-P(sol) polarization free energy of solvation -29.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds