Wall clock time and date at job start Mon Mar 30 2020 02:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00073 * 2 1 4 4 H 1.48498 * 109.47029 * 270.00157 * 3 2 1 5 5 H 1.48504 * 109.47122 * 29.99852 * 3 2 1 6 6 H 1.48501 * 109.47212 * 149.99847 * 3 2 1 7 7 C 1.37878 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99981 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00205 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.26620 * 52.66712 * 9 7 2 11 11 N 1.46537 * 110.77610 * 290.77649 * 9 7 2 12 12 C 1.39576 * 110.08578 * 241.39552 * 11 9 7 13 13 C 1.39680 * 129.32312 * 179.33953 * 12 11 9 14 14 C 1.37830 * 120.28147 * 179.97438 * 13 12 11 15 15 C 1.38302 * 120.23112 * 0.02562 * 14 13 12 16 16 C 1.38233 * 119.83260 * 359.97337 * 15 14 13 17 17 C 1.38172 * 120.15174 * 0.28121 * 16 15 14 18 18 C 1.51218 * 130.98509 * 179.69600 * 17 16 15 19 19 H 1.09004 * 110.42432 * 61.25722 * 18 17 16 20 20 C 1.50698 * 110.42855 * 298.78666 * 18 17 16 21 21 O 1.20827 * 119.99466 * 332.59813 * 20 18 17 22 22 O 1.34228 * 120.00489 * 152.59298 * 20 18 17 23 23 H 0.96996 * 119.99976 * 0.02562 * 1 2 3 24 24 H 0.97002 * 124.96085 * 60.69594 * 11 9 7 25 25 H 1.07996 * 119.85894 * 359.95610 * 13 12 11 26 26 H 1.07999 * 119.88600 * 179.97438 * 14 13 12 27 27 H 1.07998 * 120.08384 * 180.02562 * 15 14 13 28 28 H 1.08000 * 119.92516 * 179.97438 * 16 15 14 29 29 H 0.96700 * 116.99829 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.5249 -2.5159 -0.8133 11 7 0.5708 -2.7066 1.2807 12 6 1.0552 -3.8602 1.8994 13 6 0.7000 -4.4213 3.1282 14 6 1.3048 -5.5807 3.5636 15 6 2.2689 -6.1973 2.7869 16 6 2.6259 -5.6481 1.5696 17 6 2.0262 -4.4831 1.1312 18 6 2.2288 -3.6783 -0.1329 19 1 1.9835 -4.2783 -1.0093 20 6 3.6482 -3.1789 -0.2167 21 8 4.2830 -2.9909 0.7940 22 8 4.2072 -2.9431 -1.4140 23 1 -0.4850 0.8400 -0.0004 24 1 -0.1091 -2.1217 1.6501 25 1 -0.0516 -3.9445 3.7398 26 1 1.0255 -6.0088 4.5150 27 1 2.7410 -7.1059 3.1303 28 1 3.3789 -6.1281 0.9621 29 1 5.1200 -2.6240 -1.4171 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259664751.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:14 Heat of formation + Delta-G solvation = -79.052197 kcal Electronic energy + Delta-G solvation = -16324.144285 eV Core-core repulsion = 13597.022318 eV Total energy + Delta-G solvation = -2727.121967 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.86831 -40.14899 -37.25295 -36.81761 -34.51839 -32.95720 -30.42290 -29.80218 -27.19304 -24.48710 -23.21253 -22.36099 -21.16946 -19.37561 -18.56696 -18.14670 -17.17976 -16.93978 -16.35306 -16.09396 -15.88598 -14.90062 -14.56727 -14.35378 -14.05995 -13.76581 -13.41198 -13.29077 -12.85128 -12.66054 -12.49685 -12.29100 -12.07979 -11.66301 -11.62964 -11.40448 -10.82073 -10.62713 -9.59074 -8.40927 -7.88867 -6.48494 0.60631 0.92888 1.32475 1.35188 1.44354 1.45809 2.28658 2.37933 2.73116 3.17900 3.32299 3.71111 4.02206 4.28981 4.37067 4.38435 4.61138 4.75952 4.84625 5.02320 5.18783 5.27003 5.53784 5.65901 5.77148 5.77499 5.83785 5.89875 6.14775 6.47940 6.71231 7.19832 7.23955 7.34869 8.73475 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.027954 B = 0.010310 C = 0.008412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.409989 B = 2715.287668 C = 3327.689863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.037 3.963 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.282 1.282 7 C -0.553 4.553 8 H 0.055 0.945 9 C 0.279 3.721 10 H 0.039 0.961 11 N -0.720 5.720 12 C 0.196 3.804 13 C -0.217 4.217 14 C -0.064 4.064 15 C -0.197 4.197 16 C -0.055 4.055 17 C -0.196 4.196 18 C -0.040 4.040 19 H 0.117 0.883 20 C 0.521 3.479 21 O -0.552 6.552 22 O -0.512 6.512 23 H 0.270 0.730 24 H 0.404 0.596 25 H 0.121 0.879 26 H 0.151 0.849 27 H 0.148 0.852 28 H 0.126 0.874 29 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.101 -8.696 1.323 9.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.166 4.166 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.591 4.591 8 H 0.073 0.927 9 C 0.176 3.824 10 H 0.056 0.944 11 N -0.346 5.346 12 C 0.087 3.913 13 C -0.240 4.240 14 C -0.082 4.082 15 C -0.217 4.217 16 C -0.074 4.074 17 C -0.201 4.201 18 C -0.060 4.060 19 H 0.135 0.865 20 C 0.365 3.635 21 O -0.443 6.443 22 O -0.324 6.324 23 H 0.079 0.921 24 H 0.241 0.759 25 H 0.139 0.861 26 H 0.169 0.831 27 H 0.166 0.834 28 H 0.143 0.857 29 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 2.687 -8.531 1.398 9.053 hybrid contribution 0.587 1.825 0.056 1.918 sum 3.274 -6.706 1.454 7.603 Atomic orbital electron populations 1.69957 1.06780 1.28279 1.49107 1.25640 0.95714 1.02198 0.93061 0.85641 0.78403 0.79409 0.78736 1.19002 1.20274 1.20748 1.21733 0.92783 0.91817 1.52772 0.92694 1.18758 0.89117 0.90617 0.83896 0.94351 1.45771 1.42705 1.24040 1.22041 1.18972 0.92343 0.87077 0.92918 1.20554 1.07000 1.00671 0.95792 1.21067 0.94388 0.93227 0.99538 1.21002 1.02265 1.03103 0.95315 1.20517 0.97273 0.92961 0.96636 1.19540 1.03651 0.99465 0.97456 1.20513 0.89245 0.97430 0.98818 0.86506 1.22889 0.88679 0.71594 0.80313 1.90619 1.64648 1.50915 1.38089 1.84526 1.35408 1.78877 1.33605 0.92104 0.75880 0.86144 0.83132 0.83436 0.85655 0.72199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.87 12.97 21.45 0.28 -48.59 15 2 C 0.04 1.96 5.45 84.65 0.46 2.42 15 3 Si 0.95 42.96 29.54 68.60 2.03 44.99 15 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 6 H -0.28 -13.11 7.11 99.48 0.71 -12.40 15 7 C -0.55 -29.76 8.20 25.60 0.21 -29.55 15 8 H 0.06 3.04 5.23 -2.91 -0.02 3.03 15 9 C 0.28 13.77 3.39 44.49 0.15 13.92 15 10 H 0.04 2.02 8.14 -2.38 -0.02 2.00 15 11 N -0.72 -34.10 6.09 -320.92 -1.95 -36.05 15 12 C 0.20 8.40 7.03 38.34 0.27 8.67 15 13 C -0.22 -7.81 10.07 22.52 0.23 -7.58 15 14 C -0.06 -1.89 10.02 22.19 0.22 -1.67 15 15 C -0.20 -5.79 10.06 22.28 0.22 -5.57 15 16 C -0.06 -1.90 10.04 22.25 0.22 -1.68 15 17 C -0.20 -8.04 5.00 -19.63 -0.10 -8.14 15 18 C -0.04 -1.73 3.53 -11.87 -0.04 -1.77 15 19 H 0.12 4.35 8.14 -2.38 -0.02 4.33 15 20 C 0.52 22.28 4.80 71.24 0.34 22.62 15 21 O -0.55 -26.74 16.69 21.96 0.37 -26.38 15 22 O -0.51 -17.92 13.39 -51.39 -0.69 -18.61 15 23 H 0.27 13.84 8.31 -92.71 -0.77 13.07 15 24 H 0.40 19.48 8.72 -92.71 -0.81 18.67 15 25 H 0.12 3.94 8.06 -2.91 -0.02 3.92 15 26 H 0.15 3.27 8.06 -2.91 -0.02 3.25 15 27 H 0.15 3.26 8.06 -2.91 -0.02 3.23 15 28 H 0.13 3.73 8.06 -2.91 -0.02 3.71 15 29 H 0.42 10.50 9.10 -74.06 -0.67 9.82 15 Total: -1.00 -64.42 257.45 1.94 -62.48 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: -0.28 Total: 30.49 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 2.19 Total: -8.34 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -1.68 Total: -84.64 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -0.32 Total: -44.98 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -64.42 1.94 -62.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259664751.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.572 kcal (2) G-P(sol) polarization free energy of solvation -64.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds