Wall clock time and date at job start Mon Mar 30 2020 03:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00159 * 2 1 4 4 H 1.48497 * 109.47041 * 269.99973 * 3 2 1 5 5 H 1.48496 * 109.47277 * 30.00170 * 3 2 1 6 6 H 1.48505 * 109.47098 * 149.99879 * 3 2 1 7 7 C 1.37882 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00018 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00130 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47600 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.40023 * 55.10163 * 10 9 7 12 12 O 1.42929 * 109.43699 * 295.21617 * 10 9 7 13 13 C 1.36013 * 116.99226 * 285.33003 * 12 10 9 14 14 C 1.38451 * 120.42719 * 148.88178 * 13 12 10 15 15 C 1.38295 * 119.89383 * 178.40594 * 14 13 12 16 16 C 1.38283 * 120.23825 * 0.02562 * 15 14 13 17 17 C 1.38259 * 120.19080 * 0.29641 * 16 15 14 18 18 C 1.38574 * 119.85065 * 359.95845 * 17 16 15 19 19 N 1.40153 * 120.55144 * 179.35286 * 18 17 16 20 20 C 1.34964 * 119.19986 * 190.96487 * 19 18 17 21 21 O 1.21297 * 120.13279 * 185.75171 * 20 19 18 22 22 H 0.97005 * 119.99631 * 359.97438 * 1 2 3 23 23 H 1.09009 * 109.46601 * 60.00026 * 9 7 2 24 24 H 1.09003 * 109.47127 * 300.00558 * 9 7 2 25 25 H 1.08002 * 120.05195 * 358.43071 * 14 13 12 26 26 H 1.07997 * 119.88060 * 180.02562 * 15 14 13 27 27 H 1.07998 * 119.89891 * 180.29915 * 16 15 14 28 28 H 1.08004 * 120.07491 * 179.97438 * 17 16 15 29 29 H 0.96996 * 120.40251 * 10.98526 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 1 3.5873 -3.1742 -0.8439 12 8 3.6391 -3.2762 1.2187 13 6 4.3277 -2.9300 2.3395 14 6 3.7066 -2.9456 3.5767 15 6 4.4259 -2.6235 4.7131 16 6 5.7634 -2.2853 4.6182 17 6 6.3886 -2.2612 3.3853 18 6 5.6720 -2.5778 2.2422 19 7 6.2876 -2.5449 0.9835 20 6 5.5239 -2.6372 -0.1255 21 8 6.0444 -2.7156 -1.2183 22 1 -0.4850 0.8401 0.0004 23 1 3.8751 -0.6805 0.8889 24 1 3.8745 -0.6801 -0.8911 25 1 2.6621 -3.2092 3.6543 26 1 3.9413 -2.6361 5.6782 27 1 6.3211 -2.0395 5.5097 28 1 7.4332 -1.9964 3.3132 29 1 7.2508 -2.4572 0.9103 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259680175.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:11 Heat of formation + Delta-G solvation = -46.014777 kcal Electronic energy + Delta-G solvation = -16174.517551 eV Core-core repulsion = 13448.828194 eV Total energy + Delta-G solvation = -2725.689357 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.15262 -38.53353 -37.18793 -34.86298 -33.25752 -31.12360 -30.08518 -28.84281 -26.08927 -23.31142 -22.63832 -21.83806 -19.10238 -18.55703 -17.62209 -16.80577 -16.06640 -15.52224 -15.18418 -14.78033 -14.28297 -14.11353 -13.86577 -13.67133 -12.93169 -12.57446 -12.28144 -11.89810 -11.68289 -11.25683 -10.99358 -10.67096 -10.64835 -10.47034 -9.99149 -9.52609 -9.29008 -8.64876 -8.44536 -7.63617 -6.13661 -4.13561 1.30119 1.48621 2.62025 3.07599 3.24041 3.31742 3.33999 3.71315 4.02825 4.35766 4.39774 4.82069 5.08957 5.18489 5.33780 5.50199 5.54344 5.67365 5.91400 5.99917 6.19825 6.34684 6.59097 6.69516 6.76204 6.88259 6.95420 7.06773 7.53116 7.78352 8.06164 8.38630 8.91151 9.45802 10.98891 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.022648 B = 0.010210 C = 0.008599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.035030 B = 2741.779644 C = 3255.481996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.074 3.926 3 Si 0.872 3.128 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.515 4.515 8 H 0.083 0.917 9 C -0.030 4.030 10 C 0.095 3.905 11 H 0.146 0.854 12 O -0.288 6.288 13 C 0.104 3.896 14 C -0.107 4.107 15 C -0.114 4.114 16 C -0.125 4.125 17 C -0.131 4.131 18 C 0.088 3.912 19 N -0.663 5.663 20 C 0.496 3.504 21 O -0.520 6.520 22 H 0.265 0.735 23 H 0.026 0.974 24 H 0.034 0.966 25 H 0.140 0.860 26 H 0.129 0.871 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.367 -4.174 8.979 15.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.553 4.553 8 H 0.101 0.899 9 C -0.068 4.068 10 C 0.037 3.963 11 H 0.163 0.837 12 O -0.201 6.201 13 C 0.057 3.943 14 C -0.126 4.126 15 C -0.133 4.133 16 C -0.143 4.143 17 C -0.152 4.152 18 C -0.007 4.007 19 N -0.310 5.310 20 C 0.284 3.716 21 O -0.395 6.395 22 H 0.075 0.925 23 H 0.045 0.955 24 H 0.052 0.948 25 H 0.158 0.842 26 H 0.147 0.853 27 H 0.143 0.857 28 H 0.144 0.856 29 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 11.139 -4.253 8.261 14.506 hybrid contribution 1.048 1.250 -0.097 1.634 sum 12.187 -3.003 8.164 14.973 Atomic orbital electron populations 1.69881 1.06106 1.27035 1.50166 1.24909 0.94723 0.98812 0.94348 0.86901 0.80371 0.84057 0.78768 1.19977 1.20943 1.19286 1.20805 0.87602 0.95173 1.51723 0.89913 1.20143 0.99539 0.88994 0.98097 1.23041 0.86841 0.99879 0.86572 0.83664 1.86294 1.58260 1.61648 1.13935 1.18654 0.87968 0.99047 0.88665 1.20626 1.00677 1.01672 0.89628 1.20942 0.94141 1.00189 0.97983 1.20824 0.95079 1.01819 0.96623 1.20521 0.99842 1.03725 0.91068 1.18093 0.92337 1.04652 0.85666 1.43734 1.10570 1.72212 1.04444 1.22081 0.91825 0.74174 0.83533 1.90730 1.75137 1.47770 1.25864 0.92478 0.95547 0.94789 0.84195 0.85324 0.85678 0.85619 0.75451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.96 55.43 0.77 -26.13 15 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 15 3 Si 0.87 21.45 27.47 -169.99 -4.67 16.78 15 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 15 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 6 H -0.27 -6.43 6.54 56.52 0.37 -6.06 15 7 C -0.52 -14.32 9.43 -34.44 -0.32 -14.65 15 8 H 0.08 2.47 7.99 -52.49 -0.42 2.05 15 9 C -0.03 -0.72 3.56 -27.89 -0.10 -0.82 15 10 C 0.10 1.99 3.14 -27.86 -0.09 1.90 15 11 H 0.15 2.93 8.14 -51.93 -0.42 2.51 15 12 O -0.29 -5.89 9.90 -19.78 -0.20 -6.09 15 13 C 0.10 1.88 5.84 -39.10 -0.23 1.65 15 14 C -0.11 -1.68 9.99 -39.48 -0.39 -2.07 15 15 C -0.11 -1.42 10.04 -39.54 -0.40 -1.82 15 16 C -0.12 -1.45 10.04 -39.56 -0.40 -1.84 15 17 C -0.13 -1.66 9.93 -39.45 -0.39 -2.06 15 18 C 0.09 1.41 6.57 -83.53 -0.55 0.86 15 19 N -0.66 -10.65 5.46 -9.71 -0.05 -10.70 15 20 C 0.50 9.57 7.18 -10.87 -0.08 9.49 15 21 O -0.52 -10.99 17.95 5.54 0.10 -10.89 15 22 H 0.27 7.47 8.31 -40.82 -0.34 7.14 15 23 H 0.03 0.64 6.79 -51.92 -0.35 0.29 15 24 H 0.03 0.82 7.57 -51.93 -0.39 0.42 15 25 H 0.14 2.11 8.06 -52.49 -0.42 1.69 15 26 H 0.13 1.24 8.06 -52.49 -0.42 0.82 15 27 H 0.13 1.07 8.06 -52.49 -0.42 0.65 15 28 H 0.13 1.24 8.06 -52.48 -0.42 0.81 15 29 H 0.41 5.29 8.87 -40.82 -0.36 4.93 15 LS Contribution 256.58 15.07 3.87 3.87 Total: -1.00 -31.93 256.58 -6.03 -37.96 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -2.81 Total: 2.52 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -3.04 Total: -7.32 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.72 Total: -36.83 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.10 Total: -16.98 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.93 -6.03 -37.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259680175.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.051 kcal (2) G-P(sol) polarization free energy of solvation -31.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds