Wall clock time and date at job start Mon Mar 30 2020 02:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99349 * 2 1 4 4 H 1.48499 * 109.47240 * 269.99910 * 3 2 1 5 5 H 1.48502 * 109.47353 * 30.00158 * 3 2 1 6 6 H 1.48498 * 109.47183 * 150.00195 * 3 2 1 7 7 C 1.37871 * 120.00425 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00123 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00135 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47360 * 59.99988 * 9 7 2 11 11 O 1.42892 * 109.46966 * 299.99951 * 9 7 2 12 12 C 1.50695 * 109.47360 * 179.97438 * 9 7 2 13 13 C 1.34189 * 126.49928 * 95.02317 * 12 9 7 14 14 N 1.36963 * 109.92266 * 179.97438 * 13 12 9 15 15 H 0.96997 * 125.07225 * 180.02562 * 14 13 12 16 16 C 1.37704 * 109.85623 * 359.97438 * 14 13 12 17 17 C 1.39102 * 133.44515 * 179.97438 * 16 14 13 18 18 C 1.38205 * 119.73627 * 180.02562 * 17 16 14 19 19 O 1.35940 * 119.72582 * 179.97438 * 18 17 16 20 20 C 1.39274 * 120.54448 * 359.94392 * 18 17 16 21 21 C 1.36565 * 120.47527 * 0.02701 * 20 18 17 22 22 C 1.39649 * 119.83909 * 359.97438 * 21 20 18 23 23 H 0.96992 * 120.00860 * 359.97438 * 1 2 3 24 24 H 0.96707 * 114.00156 * 300.00010 * 11 9 7 25 25 H 1.07996 * 125.03514 * 359.97438 * 13 12 9 26 26 H 1.07997 * 120.12803 * 0.03672 * 17 16 14 27 27 H 0.96698 * 114.00779 * 269.97532 * 19 18 17 28 28 H 1.07998 * 119.76325 * 180.30400 * 20 18 17 29 29 H 1.07998 * 120.07741 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6249 -2.5572 -0.8897 11 8 0.4293 -2.5746 1.1670 12 6 2.2306 -3.6445 0.0005 13 6 2.6775 -4.3125 1.0751 14 7 3.5562 -5.2884 0.6858 15 1 4.0101 -5.9010 1.2853 16 6 3.6981 -5.2706 -0.6838 17 6 4.4483 -6.0278 -1.5776 18 6 4.3758 -5.7606 -2.9316 19 8 5.1094 -6.5003 -3.8049 20 6 3.5568 -4.7402 -3.4089 21 6 2.8133 -3.9877 -2.5452 22 6 2.8729 -4.2422 -1.1734 23 1 -0.4851 0.8399 0.0004 24 1 0.9212 -2.5290 1.9984 25 1 2.3873 -4.1106 2.0955 26 1 5.0847 -6.8213 -1.2148 27 1 5.9902 -6.1421 -3.9808 28 1 3.5060 -4.5455 -4.4700 29 1 2.1801 -3.1983 -2.9224 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259683265.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:51 Heat of formation + Delta-G solvation = -36.917752 kcal Electronic energy + Delta-G solvation = -15698.370115 eV Core-core repulsion = 12973.075235 eV Total energy + Delta-G solvation = -2725.294880 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.77378 -38.22806 -35.65194 -34.95167 -32.12648 -31.26907 -29.18198 -27.74155 -26.36782 -22.83933 -22.53216 -21.41776 -18.83794 -17.99648 -17.28457 -16.87115 -15.74915 -15.11278 -14.58152 -14.38807 -14.21557 -13.81930 -13.47419 -12.99763 -12.81868 -12.54462 -11.59519 -11.19073 -11.12376 -11.00954 -10.89629 -10.85786 -10.27123 -10.20146 -9.34535 -8.98122 -8.55787 -8.30356 -7.71564 -7.01252 -5.98277 -4.17171 1.45999 1.95111 3.28314 3.29395 3.36274 3.41086 3.52715 4.18451 4.43148 4.57147 5.16244 5.24560 5.38364 5.51289 5.70276 5.82344 6.05565 6.13356 6.29233 6.45978 6.60222 6.75977 6.93720 7.08885 7.29382 7.50635 7.77934 7.87086 7.87775 8.05244 8.19081 8.86094 9.34867 9.58640 11.04105 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.030544 B = 0.007423 C = 0.006606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.496662 B = 3771.066071 C = 4237.534247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.079 3.921 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.557 4.557 8 H 0.056 0.944 9 C 0.288 3.712 10 H 0.066 0.934 11 O -0.560 6.560 12 C -0.137 4.137 13 C 0.017 3.983 14 N -0.601 5.601 15 H 0.408 0.592 16 C 0.107 3.893 17 C -0.167 4.167 18 C 0.113 3.887 19 O -0.502 6.502 20 C -0.184 4.184 21 C -0.036 4.036 22 C -0.103 4.103 23 H 0.261 0.739 24 H 0.343 0.657 25 H 0.165 0.835 26 H 0.118 0.882 27 H 0.383 0.617 28 H 0.123 0.877 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.774 -9.189 -1.423 12.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.127 4.127 3 Si 0.717 3.283 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.595 4.595 8 H 0.075 0.925 9 C 0.230 3.770 10 H 0.083 0.917 11 O -0.363 6.363 12 C -0.143 4.143 13 C -0.105 4.105 14 N -0.205 5.205 15 H 0.244 0.756 16 C -0.002 4.002 17 C -0.189 4.189 18 C 0.068 3.932 19 O -0.311 6.311 20 C -0.204 4.204 21 C -0.055 4.055 22 C -0.108 4.108 23 H 0.071 0.929 24 H 0.187 0.813 25 H 0.182 0.818 26 H 0.136 0.864 27 H 0.238 0.762 28 H 0.141 0.859 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.639 -9.533 -1.769 12.344 hybrid contribution 1.724 0.962 0.683 2.089 sum 9.362 -8.572 -1.085 12.740 Atomic orbital electron populations 1.70070 1.05878 1.26487 1.47263 1.25045 0.94689 0.99030 0.93949 0.86662 0.79937 0.83489 0.78240 1.20503 1.21161 1.19884 1.21558 0.93196 0.90575 1.54204 0.92544 1.17866 0.85980 0.86947 0.86209 0.91662 1.86618 1.38005 1.96318 1.15325 1.22043 1.02259 1.00060 0.89941 1.21417 0.96447 0.93127 0.99516 1.41650 1.41463 1.32549 1.04836 0.75642 1.17993 0.99905 0.98448 0.83835 1.19981 1.04568 1.02784 0.91546 1.17901 0.95643 0.92546 0.87111 1.84813 1.30883 1.51704 1.63711 1.20762 1.01857 0.97780 0.99953 1.20302 0.96679 0.97435 0.91080 1.19213 1.00345 0.97611 0.93677 0.92940 0.81294 0.81769 0.86445 0.76192 0.85925 0.85122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.05 12.84 55.43 0.71 -24.34 15 2 C 0.08 2.17 5.40 -17.82 -0.10 2.07 15 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 15 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 15 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 7 C -0.56 -15.14 8.75 -34.44 -0.30 -15.44 15 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 15 9 C 0.29 7.30 3.35 -29.04 -0.10 7.21 15 10 H 0.07 1.82 8.14 -51.93 -0.42 1.40 15 11 O -0.56 -14.12 12.52 -35.23 -0.44 -14.56 15 12 C -0.14 -2.95 5.39 -102.70 -0.55 -3.50 15 13 C 0.02 0.31 11.15 -16.69 -0.19 0.13 15 14 N -0.60 -9.33 6.08 -10.64 -0.06 -9.39 15 15 H 0.41 4.68 8.96 -40.82 -0.37 4.32 15 16 C 0.11 1.87 7.27 -83.99 -0.61 1.26 15 17 C -0.17 -2.60 10.01 -39.27 -0.39 -2.99 15 18 C 0.11 1.74 6.69 -39.21 -0.26 1.48 15 19 O -0.50 -6.50 13.49 -19.55 -0.26 -6.76 15 20 C -0.18 -2.97 9.91 -39.80 -0.39 -3.37 15 21 C -0.04 -0.68 10.05 -39.66 -0.40 -1.08 15 22 C -0.10 -2.09 6.35 -105.10 -0.67 -2.75 15 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 24 H 0.34 7.42 8.09 45.56 0.37 7.79 15 25 H 0.17 2.49 7.40 -52.49 -0.39 2.10 15 26 H 0.12 1.53 8.06 -52.49 -0.42 1.11 15 27 H 0.38 3.03 9.06 45.56 0.41 3.44 15 28 H 0.12 1.71 8.06 -52.49 -0.42 1.29 15 29 H 0.13 2.43 8.06 -52.49 -0.42 2.01 15 LS Contribution 261.97 15.07 3.95 3.95 Total: -1.00 -32.80 261.97 -6.30 -39.09 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -1.20 Total: 13.01 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -3.96 Total: -16.99 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.65 Total: -33.73 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.70 Total: -21.32 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.80 -6.30 -39.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259683265.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.174 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds