Wall clock time and date at job start Mon Mar 30 2020 02:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86792 * 120.00440 * 2 1 4 4 H 1.48500 * 109.47397 * 270.00148 * 3 2 1 5 5 H 1.48507 * 109.46914 * 30.00170 * 3 2 1 6 6 H 1.48502 * 109.47287 * 149.99857 * 3 2 1 7 7 C 1.37880 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99907 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99951 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47364 * 300.00229 * 9 7 2 11 11 O 1.42900 * 109.46823 * 60.00884 * 9 7 2 12 12 C 1.50704 * 109.47122 * 180.02562 * 9 7 2 13 13 C 1.34252 * 126.48761 * 264.98076 * 12 9 7 14 14 N 1.36797 * 109.93704 * 180.02562 * 13 12 9 15 15 H 0.96991 * 125.07555 * 180.02562 * 14 13 12 16 16 C 1.37908 * 109.85037 * 359.97438 * 14 13 12 17 17 C 1.39092 * 133.35935 * 180.02562 * 16 14 13 18 18 C 1.37681 * 119.99876 * 180.02562 * 17 16 14 19 19 C 1.39268 * 120.61890 * 0.02562 * 18 17 16 20 20 O 1.35996 * 119.86749 * 179.97438 * 19 18 17 21 21 C 1.38045 * 120.26586 * 359.95876 * 19 18 17 22 22 C 1.39664 * 119.60484 * 0.02562 * 21 19 18 23 23 H 0.97006 * 119.99773 * 359.97438 * 1 2 3 24 24 H 0.96698 * 114.00262 * 59.99629 * 11 9 7 25 25 H 1.07997 * 125.03012 * 359.96047 * 13 12 9 26 26 H 1.08004 * 119.99894 * 0.02562 * 17 16 14 27 27 H 1.07992 * 119.69530 * 179.97438 * 18 17 16 28 28 H 0.96700 * 113.99607 * 269.97545 * 20 19 18 29 29 H 1.08009 * 120.19526 * 179.74971 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 1 0.6245 -2.5571 0.8896 11 8 0.4290 -2.5746 -1.1671 12 6 2.2301 -3.6447 -0.0005 13 6 2.6771 -4.3129 -1.0758 14 7 3.5546 -5.2878 -0.6875 15 1 4.0088 -5.8999 -1.2873 16 6 3.6979 -5.2698 0.6840 17 6 4.4492 -6.0280 1.5757 18 6 4.3828 -5.7684 2.9262 19 6 3.5673 -4.7500 3.4134 20 8 3.5130 -4.5070 4.7504 21 6 2.8141 -3.9860 2.5447 22 6 2.8740 -4.2404 1.1728 23 1 -0.4850 0.8401 0.0004 24 1 0.9209 -2.5291 -1.9984 25 1 2.3860 -4.1113 -2.0960 26 1 5.0847 -6.8205 1.2087 27 1 4.9680 -6.3604 3.6142 28 1 2.8284 -5.0087 5.2138 29 1 2.1790 -3.1991 2.9242 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259703268.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:27 Heat of formation + Delta-G solvation = -36.807153 kcal Electronic energy + Delta-G solvation = -15755.526889 eV Core-core repulsion = 13030.236805 eV Total energy + Delta-G solvation = -2725.290084 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.75232 -38.08594 -35.69237 -34.75268 -32.11332 -31.48850 -28.68214 -28.01802 -26.39104 -22.83746 -22.48151 -21.39818 -18.88821 -17.64637 -17.56479 -16.87055 -15.67994 -15.01767 -14.56225 -14.35574 -14.21318 -13.82545 -13.45491 -12.96286 -12.70676 -12.38025 -11.67045 -11.39914 -11.15299 -11.00826 -10.88922 -10.81627 -10.18089 -10.07949 -9.33878 -9.01247 -8.55958 -8.29099 -7.66389 -6.99890 -5.96790 -4.15377 1.50996 1.86824 3.29592 3.32858 3.38200 3.44477 3.57795 4.17003 4.44903 4.61819 5.11199 5.25049 5.33475 5.50769 5.71909 5.82015 6.03294 6.19553 6.33250 6.39098 6.61189 6.70989 6.91838 7.05276 7.29812 7.50324 7.78820 7.88405 8.03663 8.05560 8.20418 8.87714 9.35480 9.60194 11.05599 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.025418 B = 0.008299 C = 0.007050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.316134 B = 3372.907392 C = 3970.753784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.079 3.921 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.557 4.557 8 H 0.056 0.944 9 C 0.288 3.712 10 H 0.065 0.935 11 O -0.561 6.561 12 C -0.141 4.141 13 C 0.022 3.978 14 N -0.602 5.602 15 H 0.408 0.592 16 C 0.087 3.913 17 C -0.127 4.127 18 C -0.126 4.126 19 C 0.054 3.946 20 O -0.499 6.499 21 C -0.075 4.075 22 C -0.082 4.082 23 H 0.261 0.739 24 H 0.343 0.657 25 H 0.165 0.835 26 H 0.116 0.884 27 H 0.123 0.877 28 H 0.379 0.621 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.420 -11.438 1.581 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.595 4.595 8 H 0.075 0.925 9 C 0.230 3.770 10 H 0.083 0.917 11 O -0.363 6.363 12 C -0.148 4.148 13 C -0.101 4.101 14 N -0.206 5.206 15 H 0.244 0.756 16 C -0.020 4.020 17 C -0.148 4.148 18 C -0.146 4.146 19 C 0.009 3.991 20 O -0.307 6.307 21 C -0.094 4.094 22 C -0.088 4.088 23 H 0.070 0.930 24 H 0.187 0.813 25 H 0.183 0.817 26 H 0.134 0.866 27 H 0.141 0.859 28 H 0.233 0.767 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.261 -11.032 1.804 12.813 hybrid contribution 0.892 0.413 -0.565 1.134 sum 7.153 -10.620 1.239 12.864 Atomic orbital electron populations 1.70072 1.05888 1.26473 1.47329 1.25041 0.94698 0.99052 0.93911 0.86661 0.80096 0.83441 0.78164 1.20575 1.21089 1.19779 1.21565 0.93221 0.90581 1.54151 0.92543 1.17859 0.85966 0.86967 0.86166 0.91719 1.86614 1.38021 1.96322 1.15323 1.22032 1.02654 1.00255 0.89831 1.21411 0.96251 0.92906 0.99482 1.41654 1.41478 1.32550 1.04910 0.75621 1.18312 1.00625 0.99243 0.83865 1.19697 1.02083 1.01224 0.91756 1.20863 1.00925 0.98179 0.94644 1.18029 1.00376 0.97663 0.83020 1.84889 1.59302 1.69245 1.17308 1.20895 0.98089 0.98991 0.91463 1.18993 0.99720 0.97019 0.93057 0.92960 0.81300 0.81749 0.86552 0.85876 0.76748 0.85017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.34 12.84 55.43 0.71 -24.62 15 2 C 0.08 2.21 5.40 -17.82 -0.10 2.11 15 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.40 15 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 15 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 15 7 C -0.56 -15.42 8.75 -34.44 -0.30 -15.72 15 8 H 0.06 1.58 7.74 -52.48 -0.41 1.18 15 9 C 0.29 7.39 3.35 -29.03 -0.10 7.30 15 10 H 0.07 1.83 8.14 -51.93 -0.42 1.41 15 11 O -0.56 -14.17 12.52 -35.23 -0.44 -14.61 15 12 C -0.14 -3.07 5.39 -102.70 -0.55 -3.62 15 13 C 0.02 0.40 11.15 -16.74 -0.19 0.21 15 14 N -0.60 -9.20 6.08 -10.62 -0.06 -9.26 15 15 H 0.41 4.54 8.96 -40.82 -0.37 4.17 15 16 C 0.09 1.51 7.27 -83.92 -0.61 0.90 15 17 C -0.13 -1.86 10.06 -39.47 -0.40 -2.26 15 18 C -0.13 -1.87 9.95 -39.40 -0.39 -2.26 15 19 C 0.05 0.91 6.69 -39.27 -0.26 0.65 15 20 O -0.50 -7.43 13.50 -19.73 -0.27 -7.70 15 21 C -0.08 -1.47 10.03 -39.12 -0.39 -1.86 15 22 C -0.08 -1.69 6.35 -105.14 -0.67 -2.35 15 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 15 24 H 0.34 7.45 8.09 45.56 0.37 7.82 15 25 H 0.17 2.47 7.40 -52.49 -0.39 2.09 15 26 H 0.12 1.34 8.06 -52.48 -0.42 0.91 15 27 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 28 H 0.38 3.67 9.06 45.56 0.41 4.08 15 29 H 0.13 2.65 8.06 -52.48 -0.42 2.23 15 LS Contribution 262.06 15.07 3.95 3.95 Total: -1.00 -33.40 262.06 -6.29 -39.69 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -1.20 Total: 13.06 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -3.96 Total: -16.91 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.65 Total: -33.89 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.71 Total: -22.31 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.40 -6.29 -39.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259703268.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.882 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds