Wall clock time and date at job start Mon Mar 30 2020 02:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86792 * 120.00440 * 2 1 4 4 H 1.48500 * 109.47397 * 270.00148 * 3 2 1 5 5 H 1.48507 * 109.46914 * 30.00170 * 3 2 1 6 6 H 1.48502 * 109.47287 * 149.99857 * 3 2 1 7 7 C 1.37880 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99907 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99951 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47364 * 300.00229 * 9 7 2 11 11 O 1.42900 * 109.46823 * 60.00884 * 9 7 2 12 12 C 1.50704 * 109.47122 * 180.02562 * 9 7 2 13 13 C 1.34252 * 126.48761 * 264.98076 * 12 9 7 14 14 N 1.36797 * 109.93704 * 180.02562 * 13 12 9 15 15 H 0.96991 * 125.07555 * 180.02562 * 14 13 12 16 16 C 1.37908 * 109.85037 * 359.97438 * 14 13 12 17 17 C 1.39092 * 133.35935 * 180.02562 * 16 14 13 18 18 C 1.37681 * 119.99876 * 180.02562 * 17 16 14 19 19 C 1.39268 * 120.61890 * 0.02562 * 18 17 16 20 20 O 1.35996 * 119.86749 * 179.97438 * 19 18 17 21 21 C 1.38045 * 120.26586 * 359.95876 * 19 18 17 22 22 C 1.39664 * 119.60484 * 0.02562 * 21 19 18 23 23 H 0.97006 * 119.99773 * 359.97438 * 1 2 3 24 24 H 0.96698 * 114.00262 * 59.99629 * 11 9 7 25 25 H 1.07997 * 125.03012 * 359.96047 * 13 12 9 26 26 H 1.08004 * 119.99894 * 0.02562 * 17 16 14 27 27 H 1.07992 * 119.69530 * 179.97438 * 18 17 16 28 28 H 0.96700 * 113.99607 * 269.97545 * 20 19 18 29 29 H 1.08009 * 120.19526 * 179.74971 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 1 0.6245 -2.5571 0.8896 11 8 0.4290 -2.5746 -1.1671 12 6 2.2301 -3.6447 -0.0005 13 6 2.6771 -4.3129 -1.0758 14 7 3.5546 -5.2878 -0.6875 15 1 4.0088 -5.8999 -1.2873 16 6 3.6979 -5.2698 0.6840 17 6 4.4492 -6.0280 1.5757 18 6 4.3828 -5.7684 2.9262 19 6 3.5673 -4.7500 3.4134 20 8 3.5130 -4.5070 4.7504 21 6 2.8141 -3.9860 2.5447 22 6 2.8740 -4.2404 1.1728 23 1 -0.4850 0.8401 0.0004 24 1 0.9209 -2.5291 -1.9984 25 1 2.3860 -4.1113 -2.0960 26 1 5.0847 -6.8205 1.2087 27 1 4.9680 -6.3604 3.6142 28 1 2.8284 -5.0087 5.2138 29 1 2.1790 -3.1991 2.9242 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259703268.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:27 Heat of formation + Delta-G solvation = -63.867328 kcal Electronic energy + Delta-G solvation = -15756.700306 eV Core-core repulsion = 13030.236805 eV Total energy + Delta-G solvation = -2726.463501 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.10228 -39.35394 -37.58251 -36.04759 -34.26223 -32.93222 -30.22438 -29.32063 -28.29397 -24.77550 -23.79411 -22.68539 -20.40192 -19.12829 -18.92159 -18.80959 -16.97120 -16.67234 -16.27702 -16.16761 -15.54170 -15.24084 -14.93428 -14.57313 -14.55471 -13.54362 -13.37693 -13.12190 -12.95428 -12.81493 -12.64706 -12.16482 -12.06945 -11.45910 -11.18395 -10.78403 -10.47450 -10.22293 -8.97488 -8.47598 -8.05774 -6.37096 0.19013 0.58522 1.38130 1.40032 1.50850 1.88779 2.33228 2.41859 2.86236 3.11820 3.41636 3.88786 4.04865 4.28405 4.30656 4.41411 4.57455 4.78873 4.90036 5.04447 5.11477 5.33329 5.58633 5.64278 5.66272 5.80592 5.94552 6.11493 6.21412 6.72799 6.87585 6.97639 7.33858 7.56330 8.91581 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.025418 B = 0.008299 C = 0.007050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.316134 B = 3372.907392 C = 3970.753784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.028 3.972 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.566 4.566 8 H 0.047 0.953 9 C 0.298 3.702 10 H 0.016 0.984 11 O -0.574 6.574 12 C -0.202 4.202 13 C 0.054 3.946 14 N -0.580 5.580 15 H 0.433 0.567 16 C 0.078 3.922 17 C -0.106 4.106 18 C -0.125 4.125 19 C 0.067 3.933 20 O -0.508 6.508 21 C -0.122 4.122 22 C -0.115 4.115 23 H 0.262 0.738 24 H 0.359 0.641 25 H 0.194 0.806 26 H 0.163 0.837 27 H 0.161 0.839 28 H 0.403 0.597 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.978 -13.251 1.018 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.174 4.174 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.604 4.604 8 H 0.066 0.934 9 C 0.240 3.760 10 H 0.034 0.966 11 O -0.379 6.379 12 C -0.209 4.209 13 C -0.071 4.071 14 N -0.185 5.185 15 H 0.273 0.727 16 C -0.030 4.030 17 C -0.127 4.127 18 C -0.144 4.144 19 C 0.021 3.979 20 O -0.320 6.320 21 C -0.141 4.141 22 C -0.120 4.120 23 H 0.071 0.929 24 H 0.204 0.796 25 H 0.210 0.790 26 H 0.180 0.820 27 H 0.179 0.821 28 H 0.260 0.740 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.842 -12.891 1.237 15.681 hybrid contribution 0.109 0.868 -0.320 0.931 sum 8.951 -12.023 0.917 15.017 Atomic orbital electron populations 1.70200 1.07464 1.27385 1.48681 1.25859 0.95486 1.02594 0.93493 0.85605 0.78495 0.79088 0.78680 1.19178 1.20609 1.19841 1.21824 0.92841 0.92080 1.53631 0.93449 1.17348 0.85734 0.88410 0.84531 0.96636 1.86526 1.38808 1.96464 1.16061 1.21611 1.05034 1.01708 0.92506 1.21676 0.94439 0.91476 0.99538 1.41536 1.40401 1.31905 1.04700 0.72690 1.18538 1.00730 0.98955 0.84785 1.20209 1.00591 1.00768 0.91111 1.21253 1.00209 0.97405 0.95531 1.18177 0.99327 0.97087 0.83275 1.84805 1.60362 1.70289 1.16572 1.20868 1.00408 1.00460 0.92367 1.19202 1.01082 0.98643 0.93100 0.92861 0.79590 0.78962 0.81962 0.82099 0.73956 0.88240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.92 12.84 21.45 0.28 -54.64 15 2 C 0.03 1.60 5.40 84.66 0.46 2.06 15 3 Si 0.96 44.94 29.54 68.60 2.03 46.97 15 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 15 6 H -0.27 -12.75 7.11 99.48 0.71 -12.04 15 7 C -0.57 -32.65 8.75 25.60 0.22 -32.42 15 8 H 0.05 2.75 7.74 -2.91 -0.02 2.73 15 9 C 0.30 16.19 3.35 29.10 0.10 16.29 15 10 H 0.02 0.98 8.14 -2.39 -0.02 0.96 15 11 O -0.57 -30.14 12.52 -148.98 -1.87 -32.01 15 12 C -0.20 -9.05 5.39 -18.62 -0.10 -9.15 15 13 C 0.05 1.86 11.15 83.01 0.93 2.79 15 14 N -0.58 -15.95 6.08 -187.53 -1.14 -17.09 15 15 H 0.43 7.68 8.96 -92.72 -0.83 6.85 15 16 C 0.08 2.52 7.27 38.97 0.28 2.80 15 17 C -0.11 -2.67 10.06 22.34 0.22 -2.45 15 18 C -0.12 -3.23 9.95 22.39 0.22 -3.01 15 19 C 0.07 2.19 6.69 22.47 0.15 2.34 15 20 O -0.51 -14.63 13.50 -93.50 -1.26 -15.89 15 21 C -0.12 -5.00 10.03 22.57 0.23 -4.78 15 22 C -0.11 -4.82 6.35 -20.20 -0.13 -4.94 15 23 H 0.26 15.07 8.31 -92.70 -0.77 14.30 15 24 H 0.36 15.82 8.09 -74.06 -0.60 15.22 15 25 H 0.19 5.32 7.40 -2.91 -0.02 5.30 15 26 H 0.16 2.63 8.06 -2.91 -0.02 2.60 15 27 H 0.16 2.98 8.06 -2.91 -0.02 2.96 15 28 H 0.40 7.31 9.06 -74.06 -0.67 6.63 15 29 H 0.10 4.52 8.06 -2.91 -0.02 4.49 15 Total: -1.00 -76.22 262.06 -0.27 -76.49 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: -0.89 Total: 26.66 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: 2.58 Total: -30.47 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -0.86 Total: -71.74 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -3.13 Total: -47.90 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -76.22 -0.27 -76.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259703268.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.620 kcal (2) G-P(sol) polarization free energy of solvation -76.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds