Wall clock time and date at job start Mon Mar 30 2020 02:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99957 * 2 1 4 4 H 1.48503 * 109.47147 * 269.99773 * 3 2 1 5 5 H 1.48500 * 109.47049 * 30.00005 * 3 2 1 6 6 H 1.48501 * 109.46847 * 149.99935 * 3 2 1 7 7 C 1.37872 * 119.99620 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00286 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99588 * 180.02562 * 7 2 1 10 10 H 1.09003 * 109.47194 * 60.00165 * 9 7 2 11 11 O 1.42894 * 109.46970 * 299.99779 * 9 7 2 12 12 C 1.50702 * 109.46782 * 179.97438 * 9 7 2 13 13 C 1.34242 * 126.49193 * 95.02750 * 12 9 7 14 14 N 1.36794 * 109.94097 * 179.97438 * 13 12 9 15 15 H 0.96998 * 125.07992 * 180.02562 * 14 13 12 16 16 C 1.37905 * 109.84851 * 359.97438 * 14 13 12 17 17 C 1.39099 * 133.35838 * 180.28864 * 16 14 13 18 18 C 1.37676 * 119.99756 * 180.02562 * 17 16 14 19 19 C 1.39271 * 120.62076 * 359.64278 * 18 17 16 20 20 O 1.35990 * 119.86801 * 180.17715 * 19 18 17 21 21 C 1.38046 * 120.26566 * 0.15967 * 19 18 17 22 22 C 1.39670 * 119.60407 * 0.02562 * 21 19 18 23 23 H 0.97004 * 119.99815 * 0.02562 * 1 2 3 24 24 H 0.96697 * 114.00426 * 299.99738 * 11 9 7 25 25 H 1.08005 * 125.03074 * 359.94121 * 13 12 9 26 26 H 1.08004 * 119.99909 * 359.97438 * 17 16 14 27 27 H 1.07998 * 119.69604 * 179.81736 * 18 17 16 28 28 H 0.96700 * 114.00107 * 269.97864 * 20 19 18 29 29 H 1.07993 * 120.19492 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 1 3.8746 -0.6800 0.8912 11 8 3.9883 -0.5207 -1.1656 12 6 4.0138 -2.6149 0.0023 13 6 4.3695 -3.3368 -1.0722 14 7 4.7747 -4.5840 -0.6830 15 1 5.0786 -5.2837 -1.2821 16 6 4.6878 -4.6978 0.6886 17 6 4.9739 -5.7251 1.5818 18 6 4.7800 -5.5374 2.9318 19 6 4.3050 -4.3218 3.4180 20 8 4.1226 -4.1519 4.7548 21 6 4.0191 -3.2885 2.5483 22 6 4.2083 -3.4691 1.1764 23 1 -0.4850 0.8401 -0.0004 24 1 3.7033 -0.9244 -1.9968 25 1 4.3396 -2.9851 -2.0929 26 1 5.3473 -6.6702 1.2160 27 1 5.0009 -6.3393 3.6206 28 1 3.2400 -4.3962 5.0656 29 1 3.6512 -2.3463 2.9266 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259703271.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:30 Heat of formation + Delta-G solvation = -34.125532 kcal Electronic energy + Delta-G solvation = -15799.328982 eV Core-core repulsion = 13074.155182 eV Total energy + Delta-G solvation = -2725.173800 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.83848 -38.13597 -36.10718 -34.83411 -32.27988 -31.61034 -28.87476 -28.08002 -26.83034 -22.68327 -22.48284 -21.46133 -18.99049 -17.83066 -17.69076 -17.07182 -15.76216 -15.06757 -14.90236 -14.40938 -14.13509 -13.88619 -13.61314 -13.23507 -12.81294 -12.44169 -11.88175 -11.64739 -11.46040 -11.10127 -10.89964 -10.76773 -10.15424 -9.95136 -9.34360 -9.16435 -8.65254 -8.61058 -7.72259 -7.05840 -6.12137 -4.23478 1.45310 1.82003 3.24469 3.45702 3.48563 3.50799 3.62177 4.10135 4.50132 4.60777 5.05842 5.12113 5.27122 5.42566 5.64997 5.72567 5.84793 6.06542 6.11875 6.33203 6.38990 6.60504 6.85391 6.96375 7.12872 7.34947 7.53224 7.55262 7.94270 8.01354 8.30228 8.82009 8.98881 9.50486 10.98058 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.027988 B = 0.008484 C = 0.007203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.179004 B = 3299.506774 C = 3886.470822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.082 3.918 3 Si 0.911 3.089 4 H -0.278 1.278 5 H -0.305 1.305 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.252 3.748 10 H 0.069 0.931 11 O -0.582 6.582 12 C -0.139 4.139 13 C 0.030 3.970 14 N -0.601 5.601 15 H 0.410 0.590 16 C 0.088 3.912 17 C -0.125 4.125 18 C -0.126 4.126 19 C 0.058 3.942 20 O -0.500 6.500 21 C -0.077 4.077 22 C -0.081 4.081 23 H 0.265 0.735 24 H 0.359 0.641 25 H 0.166 0.834 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.382 0.618 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.614 -10.196 1.297 13.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.123 4.123 3 Si 0.740 3.260 4 H -0.204 1.204 5 H -0.233 1.233 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.092 0.908 9 C 0.195 3.805 10 H 0.087 0.913 11 O -0.388 6.388 12 C -0.145 4.145 13 C -0.093 4.093 14 N -0.205 5.205 15 H 0.245 0.755 16 C -0.019 4.019 17 C -0.146 4.146 18 C -0.145 4.145 19 C 0.012 3.988 20 O -0.309 6.309 21 C -0.096 4.096 22 C -0.086 4.086 23 H 0.075 0.925 24 H 0.206 0.794 25 H 0.184 0.816 26 H 0.136 0.864 27 H 0.142 0.858 28 H 0.236 0.764 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.354 -9.564 1.616 13.475 hybrid contribution -0.418 -0.128 -0.684 0.812 sum 8.937 -9.692 0.932 13.216 Atomic orbital electron populations 1.69958 1.06613 1.27435 1.48921 1.25033 0.94693 0.99818 0.92731 0.86292 0.79333 0.81781 0.78583 1.20394 1.23264 1.19166 1.21445 0.89066 0.94795 1.53257 0.90759 1.18386 0.93403 0.83133 0.85598 0.91328 1.86430 1.77689 1.58028 1.16676 1.21463 1.04016 0.98821 0.90228 1.21374 1.04346 0.84240 0.99360 1.41636 1.59869 1.13953 1.05000 0.75454 1.18292 1.03413 0.96434 0.83798 1.19710 1.05968 0.97226 0.91686 1.20883 1.02396 0.96808 0.94446 1.18027 1.04622 0.93313 0.82794 1.84852 1.37211 1.89066 1.19800 1.20880 0.98167 0.99434 0.91127 1.18930 1.03297 0.93469 0.92929 0.92510 0.79402 0.81644 0.86441 0.85773 0.76419 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.96 55.43 0.77 -26.17 15 2 C 0.08 2.33 5.47 -17.82 -0.10 2.24 15 3 Si 0.91 22.99 26.18 -169.99 -4.45 18.54 15 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 15 5 H -0.30 -7.65 7.11 56.52 0.40 -7.24 15 6 H -0.27 -6.70 6.54 56.52 0.37 -6.33 15 7 C -0.55 -15.19 9.33 -34.44 -0.32 -15.51 15 8 H 0.07 2.26 7.98 -52.49 -0.42 1.85 15 9 C 0.25 6.02 2.83 -29.03 -0.08 5.94 15 10 H 0.07 1.73 7.20 -51.93 -0.37 1.36 15 11 O -0.58 -13.02 10.83 -35.23 -0.38 -13.40 15 12 C -0.14 -2.90 5.39 -102.71 -0.55 -3.45 15 13 C 0.03 0.52 11.15 -16.75 -0.19 0.33 15 14 N -0.60 -8.86 6.08 -10.63 -0.06 -8.92 15 15 H 0.41 4.35 8.96 -40.82 -0.37 3.99 15 16 C 0.09 1.49 7.27 -83.91 -0.61 0.88 15 17 C -0.12 -1.79 10.06 -39.47 -0.40 -2.19 15 18 C -0.13 -1.82 9.95 -39.40 -0.39 -2.21 15 19 C 0.06 0.95 6.69 -39.27 -0.26 0.69 15 20 O -0.50 -7.33 13.50 -19.71 -0.27 -7.59 15 21 C -0.08 -1.47 10.03 -39.12 -0.39 -1.86 15 22 C -0.08 -1.61 6.35 -105.14 -0.67 -2.28 15 23 H 0.27 7.53 8.31 -40.82 -0.34 7.19 15 24 H 0.36 6.81 8.09 45.56 0.37 7.18 15 25 H 0.17 2.32 7.40 -52.48 -0.39 1.93 15 26 H 0.12 1.31 8.06 -52.48 -0.42 0.88 15 27 H 0.12 1.46 8.06 -52.49 -0.42 1.03 15 28 H 0.38 3.81 9.06 45.56 0.41 4.22 15 29 H 0.13 2.56 8.06 -52.49 -0.42 2.14 15 LS Contribution 256.99 15.07 3.87 3.87 Total: -1.00 -33.80 256.99 -5.68 -39.48 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -1.20 Total: 11.62 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -3.96 Total: -17.43 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.71 Total: -35.09 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.65 Total: -21.00 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -4.45 Total: 18.54 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -33.80 -5.68 -39.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259703271.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.354 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds