Wall clock time and date at job start Mon Mar 30 2020 02:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99957 * 2 1 4 4 H 1.48503 * 109.47147 * 269.99773 * 3 2 1 5 5 H 1.48500 * 109.47049 * 30.00005 * 3 2 1 6 6 H 1.48501 * 109.46847 * 149.99935 * 3 2 1 7 7 C 1.37872 * 119.99620 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00286 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99588 * 180.02562 * 7 2 1 10 10 H 1.09003 * 109.47194 * 60.00165 * 9 7 2 11 11 O 1.42894 * 109.46970 * 299.99779 * 9 7 2 12 12 C 1.50702 * 109.46782 * 179.97438 * 9 7 2 13 13 C 1.34242 * 126.49193 * 95.02750 * 12 9 7 14 14 N 1.36794 * 109.94097 * 179.97438 * 13 12 9 15 15 H 0.96998 * 125.07992 * 180.02562 * 14 13 12 16 16 C 1.37905 * 109.84851 * 359.97438 * 14 13 12 17 17 C 1.39099 * 133.35838 * 180.28864 * 16 14 13 18 18 C 1.37676 * 119.99756 * 180.02562 * 17 16 14 19 19 C 1.39271 * 120.62076 * 359.64278 * 18 17 16 20 20 O 1.35990 * 119.86801 * 180.17715 * 19 18 17 21 21 C 1.38046 * 120.26566 * 0.15967 * 19 18 17 22 22 C 1.39670 * 119.60407 * 0.02562 * 21 19 18 23 23 H 0.97004 * 119.99815 * 0.02562 * 1 2 3 24 24 H 0.96697 * 114.00426 * 299.99738 * 11 9 7 25 25 H 1.08005 * 125.03074 * 359.94121 * 13 12 9 26 26 H 1.08004 * 119.99909 * 359.97438 * 17 16 14 27 27 H 1.07998 * 119.69604 * 179.81736 * 18 17 16 28 28 H 0.96700 * 114.00107 * 269.97864 * 20 19 18 29 29 H 1.07993 * 120.19492 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 1 3.8746 -0.6800 0.8912 11 8 3.9883 -0.5207 -1.1656 12 6 4.0138 -2.6149 0.0023 13 6 4.3695 -3.3368 -1.0722 14 7 4.7747 -4.5840 -0.6830 15 1 5.0786 -5.2837 -1.2821 16 6 4.6878 -4.6978 0.6886 17 6 4.9739 -5.7251 1.5818 18 6 4.7800 -5.5374 2.9318 19 6 4.3050 -4.3218 3.4180 20 8 4.1226 -4.1519 4.7548 21 6 4.0191 -3.2885 2.5483 22 6 4.2083 -3.4691 1.1764 23 1 -0.4850 0.8401 -0.0004 24 1 3.7033 -0.9244 -1.9968 25 1 4.3396 -2.9851 -2.0929 26 1 5.3473 -6.6702 1.2160 27 1 5.0009 -6.3393 3.6206 28 1 3.2400 -4.3962 5.0656 29 1 3.6512 -2.3463 2.9266 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259703271.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:30 Heat of formation + Delta-G solvation = -62.107891 kcal Electronic energy + Delta-G solvation = -15800.542388 eV Core-core repulsion = 13074.155182 eV Total energy + Delta-G solvation = -2726.387206 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.13806 -39.37488 -37.87902 -36.06807 -34.44694 -33.00870 -30.39490 -29.34103 -28.63808 -24.51279 -23.81037 -22.71321 -20.48620 -19.50106 -18.93028 -18.82723 -17.01146 -16.91334 -16.29929 -16.05542 -15.63853 -15.24320 -15.10652 -14.83970 -14.61037 -13.72373 -13.55181 -13.24477 -13.08531 -12.85873 -12.62360 -12.13789 -11.91606 -11.47851 -11.26172 -10.86041 -10.71343 -10.32193 -8.99116 -8.43905 -8.33488 -6.48482 0.17437 0.57015 1.41350 1.43370 1.58856 1.85344 2.31334 2.38551 2.82665 2.98047 3.42545 3.86236 3.96376 4.10370 4.24856 4.34800 4.53849 4.70463 4.85515 4.94378 5.08801 5.24582 5.46074 5.52604 5.60216 5.73379 5.86821 6.10948 6.19112 6.63369 6.84473 6.94871 7.15364 7.32785 8.79622 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.027988 B = 0.008484 C = 0.007203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.179004 B = 3299.506774 C = 3886.470822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.031 3.969 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.301 1.301 6 H -0.268 1.268 7 C -0.543 4.543 8 H 0.033 0.967 9 C 0.268 3.732 10 H 0.044 0.956 11 O -0.583 6.583 12 C -0.202 4.202 13 C 0.061 3.939 14 N -0.580 5.580 15 H 0.433 0.567 16 C 0.077 3.923 17 C -0.106 4.106 18 C -0.126 4.126 19 C 0.067 3.933 20 O -0.508 6.508 21 C -0.123 4.123 22 C -0.114 4.114 23 H 0.268 0.732 24 H 0.376 0.624 25 H 0.198 0.802 26 H 0.162 0.838 27 H 0.161 0.839 28 H 0.403 0.597 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.595 -12.156 0.612 16.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.168 4.168 3 Si 0.799 3.201 4 H -0.192 1.192 5 H -0.229 1.229 6 H -0.193 1.193 7 C -0.581 4.581 8 H 0.052 0.948 9 C 0.209 3.791 10 H 0.062 0.938 11 O -0.390 6.390 12 C -0.209 4.209 13 C -0.065 4.065 14 N -0.185 5.185 15 H 0.274 0.726 16 C -0.031 4.031 17 C -0.127 4.127 18 C -0.145 4.145 19 C 0.022 3.978 20 O -0.320 6.320 21 C -0.142 4.142 22 C -0.119 4.119 23 H 0.077 0.923 24 H 0.225 0.775 25 H 0.215 0.785 26 H 0.180 0.820 27 H 0.178 0.822 28 H 0.260 0.740 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.342 -11.573 0.919 16.230 hybrid contribution -1.029 0.340 -0.426 1.165 sum 10.312 -11.232 0.493 15.256 Atomic orbital electron populations 1.70071 1.08152 1.28381 1.51055 1.25799 0.95284 1.03096 0.92655 0.85330 0.77840 0.77970 0.78965 1.19219 1.22935 1.19330 1.21651 0.91447 0.92969 1.52024 0.94838 1.17849 0.90550 0.85446 0.85214 0.93787 1.86338 1.77308 1.58285 1.17097 1.21225 1.08778 0.98243 0.92620 1.21740 1.00841 0.84306 0.99644 1.41556 1.58529 1.13714 1.04732 0.72622 1.18532 1.03790 0.95993 0.84789 1.20211 1.03464 0.97906 0.91096 1.21263 1.01323 0.96567 0.95339 1.18194 1.03351 0.93360 0.82941 1.84777 1.38946 1.89388 1.18909 1.20889 1.01534 0.99770 0.92039 1.19183 1.04614 0.95062 0.93045 0.92265 0.77525 0.78488 0.82015 0.82177 0.73969 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.48 13.96 21.45 0.30 -58.18 15 2 C 0.03 1.85 5.47 84.65 0.46 2.31 15 3 Si 0.97 48.36 26.18 68.60 1.80 50.16 15 4 H -0.27 -12.73 7.11 99.48 0.71 -12.03 15 5 H -0.30 -14.72 7.11 99.48 0.71 -14.02 15 6 H -0.27 -13.32 6.54 99.48 0.65 -12.67 15 7 C -0.54 -31.35 9.33 25.60 0.24 -31.11 15 8 H 0.03 2.16 7.98 -2.91 -0.02 2.13 15 9 C 0.27 13.12 2.83 29.10 0.08 13.20 15 10 H 0.04 2.34 7.20 -2.39 -0.02 2.33 15 11 O -0.58 -25.68 10.83 -148.98 -1.61 -27.30 15 12 C -0.20 -8.52 5.39 -18.62 -0.10 -8.62 15 13 C 0.06 1.95 11.15 83.01 0.93 2.88 15 14 N -0.58 -15.28 6.08 -187.53 -1.14 -16.42 15 15 H 0.43 7.28 8.96 -92.71 -0.83 6.45 15 16 C 0.08 2.41 7.27 38.98 0.28 2.70 15 17 C -0.11 -2.63 10.06 22.34 0.22 -2.40 15 18 C -0.13 -3.22 9.95 22.39 0.22 -2.99 15 19 C 0.07 2.16 6.69 22.47 0.15 2.31 15 20 O -0.51 -14.44 13.50 -93.43 -1.26 -15.70 15 21 C -0.12 -4.91 10.03 22.57 0.23 -4.68 15 22 C -0.11 -4.60 6.35 -20.20 -0.13 -4.73 15 23 H 0.27 15.65 8.31 -92.71 -0.77 14.88 15 24 H 0.38 13.70 8.09 -74.06 -0.60 13.10 15 25 H 0.20 4.87 7.40 -2.91 -0.02 4.85 15 26 H 0.16 2.58 8.06 -2.91 -0.02 2.56 15 27 H 0.16 2.96 8.06 -2.91 -0.02 2.93 15 28 H 0.40 7.64 9.06 -74.06 -0.67 6.97 15 29 H 0.10 4.48 8.06 -2.91 -0.02 4.45 15 Total: -1.00 -76.38 256.99 -0.27 -76.65 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -0.94 Total: 21.94 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 2.59 Total: -31.15 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -0.84 Total: -74.60 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -2.87 Total: -43.00 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 1.80 Total: 50.16 kcal Total: -76.38 -0.27 -76.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259703271.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.539 kcal (2) G-P(sol) polarization free energy of solvation -76.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds