Wall clock time and date at job start Mon Mar 30 2020 03:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.38163 * 120.04358 * 265.00162 * 11 10 9 13 13 C 1.38361 * 120.31162 * 180.02562 * 12 11 10 14 14 C 1.38171 * 120.18836 * 0.02562 * 13 12 11 15 15 C 1.38567 * 119.82577 * 359.97438 * 14 13 12 16 16 N 1.39455 * 133.37393 * 179.97438 * 15 14 13 17 17 H 0.97001 * 126.25259 * 0.02562 * 16 15 14 18 18 C 1.34777 * 107.49665 * 180.02562 * 16 15 14 19 19 O 1.21600 * 125.27056 * 180.02562 * 18 16 15 20 20 O 1.34224 * 109.45615 * 359.97438 * 18 16 15 21 21 C 1.35560 * 109.18561 * 359.74640 * 20 18 16 22 22 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 24 24 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 25 25 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 26 26 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 27 27 H 1.07995 * 119.83896 * 359.97438 * 12 11 10 28 28 H 1.08004 * 119.90419 * 179.97438 * 13 12 11 29 29 H 1.07997 * 120.09007 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5287 -2.6364 0.0022 12 6 6.2204 -2.7416 -1.1892 13 6 7.6039 -2.7426 -1.1956 14 6 8.3043 -2.6389 -0.0091 15 6 7.6175 -2.5331 1.1897 16 7 8.0231 -2.4171 2.5189 17 1 8.9384 -2.3898 2.8390 18 6 6.9111 -2.3500 3.2775 19 8 6.8928 -2.2436 4.4887 20 8 5.8271 -2.4176 2.4889 21 6 6.2224 -2.5249 1.1966 22 1 -0.4849 0.8400 -0.0004 23 1 3.8746 -0.6799 0.8911 24 1 3.8752 -0.6803 -0.8888 25 1 3.6587 -3.1509 -0.8875 26 1 3.6580 -3.1497 0.8925 27 1 5.6784 -2.8242 -2.1196 28 1 8.1380 -2.8256 -2.1307 29 1 9.3843 -2.6403 -0.0159 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259870619.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:19 Heat of formation + Delta-G solvation = -31.065631 kcal Electronic energy + Delta-G solvation = -15672.774255 eV Core-core repulsion = 12947.733142 eV Total energy + Delta-G solvation = -2725.041113 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.17985 -38.74882 -37.27739 -35.67232 -33.86305 -32.08660 -29.44057 -29.27974 -25.46961 -23.58083 -22.85868 -22.24126 -20.44859 -18.64868 -17.70331 -17.23231 -16.72711 -16.21006 -15.67373 -14.87845 -14.30691 -14.12258 -13.43804 -13.37798 -12.94087 -12.72311 -12.62565 -12.27534 -11.67674 -11.45772 -11.06795 -10.94057 -10.86612 -10.20927 -9.93263 -9.74967 -9.22211 -8.54198 -8.45352 -8.25578 -6.04682 -4.03211 1.09113 1.15531 2.30946 2.50266 2.97038 3.30836 3.39188 3.44035 3.56331 4.30589 4.45611 4.85232 4.92272 5.09144 5.21344 5.29625 5.34485 5.74748 5.86152 5.99166 6.29879 6.35584 6.42667 6.51244 6.58679 6.76540 7.19998 7.22767 7.36732 7.70017 7.76332 8.51407 8.99475 9.57496 11.08613 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.025906 B = 0.007660 C = 0.006698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.561280 B = 3654.677820 C = 4179.341331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.069 3.931 3 Si 0.876 3.124 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.074 0.926 9 C -0.005 4.005 10 C -0.074 4.074 11 C -0.020 4.020 12 C -0.111 4.111 13 C -0.096 4.096 14 C -0.120 4.120 15 C 0.064 3.936 16 N -0.650 5.650 17 H 0.439 0.561 18 C 0.636 3.364 19 O -0.495 6.495 20 O -0.224 6.224 21 C 0.036 3.964 22 H 0.263 0.737 23 H 0.017 0.983 24 H 0.015 0.985 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.143 0.857 28 H 0.136 0.864 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.892 -5.683 -2.528 19.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.092 0.908 9 C -0.043 4.043 10 C -0.112 4.112 11 C -0.021 4.021 12 C -0.130 4.130 13 C -0.115 4.115 14 C -0.141 4.141 15 C -0.034 4.034 16 N -0.308 5.308 17 H 0.282 0.718 18 C 0.390 3.610 19 O -0.379 6.379 20 O -0.129 6.129 21 C -0.011 4.011 22 H 0.073 0.927 23 H 0.035 0.965 24 H 0.033 0.967 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.161 0.839 28 H 0.154 0.846 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 18.323 -5.495 -1.727 19.207 hybrid contribution 0.944 1.019 0.294 1.420 sum 19.267 -4.475 -1.433 19.831 Atomic orbital electron populations 1.69905 1.06260 1.26928 1.50968 1.24988 0.94702 0.99083 0.94466 0.86823 0.80514 0.83787 0.78503 1.20183 1.21277 1.19046 1.21083 0.89112 0.94625 1.51084 0.90788 1.19555 0.97289 0.90803 0.96635 1.20713 0.86193 1.01192 1.03057 1.19506 0.98391 0.96316 0.87876 1.20978 0.93819 1.01104 0.97070 1.20970 0.94101 0.99180 0.97213 1.19953 0.99730 1.05611 0.88778 1.18500 0.93194 1.05780 0.85946 1.43584 1.10372 1.71322 1.05499 0.71833 1.18622 0.78609 0.78098 0.85658 1.91166 1.83711 1.55693 1.07343 1.85082 1.32431 1.79274 1.16082 1.18868 0.90615 1.07790 0.83791 0.92680 0.96454 0.96690 0.90576 0.90938 0.83930 0.84572 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.92 13.96 55.43 0.77 -27.15 15 2 C 0.07 2.02 5.47 -17.82 -0.10 1.93 15 3 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 15 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 6 H -0.27 -6.55 6.54 56.52 0.37 -6.18 15 7 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 15 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 15 9 C -0.01 -0.13 4.02 -27.89 -0.11 -0.24 15 10 C -0.07 -1.43 5.29 -27.88 -0.15 -1.58 15 11 C -0.02 -0.32 5.14 -104.53 -0.54 -0.86 15 12 C -0.11 -1.38 9.67 -39.56 -0.38 -1.76 15 13 C -0.10 -0.94 10.04 -39.56 -0.40 -1.34 15 14 C -0.12 -1.19 10.07 -39.48 -0.40 -1.59 15 15 C 0.06 0.83 7.25 -83.79 -0.61 0.22 15 16 N -0.65 -7.90 6.22 -14.39 -0.09 -7.99 15 17 H 0.44 3.60 8.96 -40.82 -0.37 3.23 15 18 C 0.64 10.59 9.44 54.06 0.51 11.10 15 19 O -0.50 -9.45 18.05 -19.01 -0.34 -9.79 15 20 O -0.22 -4.17 10.72 -21.98 -0.24 -4.40 15 21 C 0.04 0.59 7.04 -38.98 -0.27 0.31 15 22 H 0.26 7.64 8.31 -40.82 -0.34 7.30 15 23 H 0.02 0.43 7.20 -51.93 -0.37 0.06 15 24 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 15 25 H 0.08 1.35 8.05 -51.93 -0.42 0.93 15 26 H 0.07 1.46 8.12 -51.93 -0.42 1.03 15 27 H 0.14 1.53 8.06 -52.49 -0.42 1.11 15 28 H 0.14 0.89 8.06 -52.48 -0.42 0.47 15 29 H 0.13 0.87 8.06 -52.49 -0.42 0.45 15 LS Contribution 260.64 15.07 3.93 3.93 Total: -1.00 -33.68 260.64 -6.24 -39.91 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: -2.83 Total: -2.89 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -2.78 Total: -8.95 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.68 Total: -35.14 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.58 Total: -14.20 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.68 -6.24 -39.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259870619.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.849 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds