Wall clock time and date at job start Mon Mar 30 2020 03:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.38163 * 120.04358 * 265.00162 * 11 10 9 13 13 C 1.38361 * 120.31162 * 180.02562 * 12 11 10 14 14 C 1.38171 * 120.18836 * 0.02562 * 13 12 11 15 15 C 1.38567 * 119.82577 * 359.97438 * 14 13 12 16 16 N 1.39455 * 133.37393 * 179.97438 * 15 14 13 17 17 H 0.97001 * 126.25259 * 0.02562 * 16 15 14 18 18 C 1.34777 * 107.49665 * 180.02562 * 16 15 14 19 19 O 1.21600 * 125.27056 * 180.02562 * 18 16 15 20 20 O 1.34224 * 109.45615 * 359.97438 * 18 16 15 21 21 C 1.35560 * 109.18561 * 359.74640 * 20 18 16 22 22 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 24 24 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 25 25 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 26 26 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 27 27 H 1.07995 * 119.83896 * 359.97438 * 12 11 10 28 28 H 1.08004 * 119.90419 * 179.97438 * 13 12 11 29 29 H 1.07997 * 120.09007 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5287 -2.6364 0.0022 12 6 6.2204 -2.7416 -1.1892 13 6 7.6039 -2.7426 -1.1956 14 6 8.3043 -2.6389 -0.0091 15 6 7.6175 -2.5331 1.1897 16 7 8.0231 -2.4171 2.5189 17 1 8.9384 -2.3898 2.8390 18 6 6.9111 -2.3500 3.2775 19 8 6.8928 -2.2436 4.4887 20 8 5.8271 -2.4176 2.4889 21 6 6.2224 -2.5249 1.1966 22 1 -0.4849 0.8400 -0.0004 23 1 3.8746 -0.6799 0.8911 24 1 3.8752 -0.6803 -0.8888 25 1 3.6587 -3.1509 -0.8875 26 1 3.6580 -3.1497 0.8925 27 1 5.6784 -2.8242 -2.1196 28 1 8.1380 -2.8256 -2.1307 29 1 9.3843 -2.6403 -0.0159 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259870619.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:19 Heat of formation + Delta-G solvation = -55.168394 kcal Electronic energy + Delta-G solvation = -15673.819429 eV Core-core repulsion = 12947.733142 eV Total energy + Delta-G solvation = -2726.086287 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.33497 -39.88450 -38.51547 -36.91446 -35.54371 -33.89846 -30.96278 -30.30122 -27.15742 -24.71345 -24.02241 -23.61984 -22.09637 -19.70049 -19.20723 -18.50879 -18.46305 -17.37434 -16.78703 -16.38617 -16.00085 -15.19672 -14.94937 -14.69527 -14.49150 -14.45155 -13.81032 -13.49087 -13.24079 -12.86355 -12.76021 -12.33178 -12.08941 -11.86607 -11.69216 -11.61408 -11.33828 -10.78202 -9.56563 -9.26935 -8.31544 -6.35515 0.08517 0.17431 1.21720 1.28189 1.31234 1.35526 1.46577 1.90910 2.33705 2.61200 3.03779 3.29851 3.77411 3.97288 4.18043 4.33706 4.37988 4.44289 4.65681 4.83301 4.94536 5.05159 5.30428 5.37687 5.43296 5.46705 5.60604 5.63632 5.67217 6.10399 6.25154 6.60547 6.71868 7.29092 8.85258 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.025906 B = 0.007660 C = 0.006698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.561280 B = 3654.677820 C = 4179.341331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.946 3.054 4 H -0.254 1.254 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.533 4.533 8 H 0.036 0.964 9 C 0.001 3.999 10 C -0.065 4.065 11 C -0.051 4.051 12 C -0.106 4.106 13 C -0.078 4.078 14 C -0.095 4.095 15 C 0.063 3.937 16 N -0.621 5.621 17 H 0.458 0.542 18 C 0.628 3.372 19 O -0.534 6.534 20 O -0.261 6.261 21 C -0.005 4.005 22 H 0.267 0.733 23 H 0.000 1.000 24 H 0.030 0.970 25 H 0.086 0.914 26 H 0.046 0.954 27 H 0.160 0.840 28 H 0.185 0.815 29 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.930 -5.155 -4.766 23.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.769 3.231 4 H -0.178 1.178 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.571 4.571 8 H 0.055 0.945 9 C -0.037 4.037 10 C -0.103 4.103 11 C -0.051 4.051 12 C -0.124 4.124 13 C -0.096 4.096 14 C -0.115 4.115 15 C -0.035 4.035 16 N -0.280 5.280 17 H 0.305 0.695 18 C 0.383 3.617 19 O -0.421 6.421 20 O -0.166 6.166 21 C -0.050 4.050 22 H 0.076 0.924 23 H 0.019 0.981 24 H 0.049 0.951 25 H 0.104 0.896 26 H 0.064 0.936 27 H 0.178 0.822 28 H 0.202 0.798 29 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 22.406 -4.986 -4.000 23.300 hybrid contribution -0.304 0.742 0.901 1.207 sum 22.102 -4.244 -3.099 22.718 Atomic orbital electron populations 1.70056 1.08162 1.28169 1.52570 1.25955 0.95580 1.03320 0.94102 0.85722 0.79048 0.78615 0.79687 1.17791 1.21007 1.18399 1.21467 0.91842 0.93321 1.50427 0.94543 1.19429 0.93966 0.94026 0.96229 1.20416 0.89525 0.98031 1.02302 1.19320 0.96144 1.00167 0.89517 1.21304 0.95469 0.99590 0.96047 1.21523 0.92778 0.96221 0.99078 1.20592 1.02013 1.01824 0.87046 1.18755 0.91720 1.06207 0.86817 1.43313 1.10139 1.69667 1.04929 0.69489 1.18737 0.79193 0.78373 0.85426 1.91116 1.84341 1.57716 1.08883 1.84992 1.34203 1.79631 1.17765 1.19261 0.92784 1.10103 0.82898 0.92417 0.98123 0.95138 0.89583 0.93563 0.82214 0.79754 0.80406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.66 13.96 21.45 0.30 -60.36 15 2 C 0.01 0.45 5.47 84.65 0.46 0.91 15 3 Si 0.95 45.64 27.47 68.60 1.88 47.52 15 4 H -0.25 -11.28 7.11 99.48 0.71 -10.57 15 5 H -0.28 -13.51 7.11 99.48 0.71 -12.80 15 6 H -0.26 -12.18 6.54 99.48 0.65 -11.53 15 7 C -0.53 -31.51 9.66 25.60 0.25 -31.26 15 8 H 0.04 2.34 7.99 -2.91 -0.02 2.32 15 9 C 0.00 0.04 4.02 29.85 0.12 0.16 15 10 C -0.07 -2.59 5.29 29.85 0.16 -2.43 15 11 C -0.05 -1.58 5.14 -19.80 -0.10 -1.68 15 12 C -0.11 -2.23 9.67 22.28 0.22 -2.01 15 13 C -0.08 -1.03 10.04 22.28 0.22 -0.81 15 14 C -0.09 -1.30 10.07 22.33 0.22 -1.08 15 15 C 0.06 1.45 7.25 38.32 0.28 1.72 15 16 N -0.62 -13.88 6.22 -430.02 -2.68 -16.56 15 17 H 0.46 6.19 8.96 -92.71 -0.83 5.36 15 18 C 0.63 21.25 9.44 129.79 1.23 22.48 15 19 O -0.53 -21.05 18.05 19.19 0.35 -20.70 15 20 O -0.26 -10.11 10.72 8.56 0.09 -10.02 15 21 C 0.00 -0.16 7.04 22.66 0.16 0.00 15 22 H 0.27 15.88 8.31 -92.71 -0.77 15.11 15 23 H 0.00 0.02 7.20 -2.39 -0.02 0.00 15 24 H 0.03 1.37 7.57 -2.39 -0.02 1.35 15 25 H 0.09 3.11 8.05 -2.39 -0.02 3.09 15 26 H 0.05 2.00 8.12 -2.39 -0.02 1.98 15 27 H 0.16 2.77 8.06 -2.91 -0.02 2.75 15 28 H 0.19 0.83 8.06 -2.91 -0.02 0.80 15 29 H 0.18 0.90 8.06 -2.91 -0.02 0.87 15 Total: -1.00 -78.84 260.64 3.45 -75.39 By element: Atomic # 1 Polarization: -1.57 SS G_CDS: 0.30 Total: -1.27 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 3.21 Total: -14.00 kcal Atomic # 7 Polarization: -74.54 SS G_CDS: -2.38 Total: -76.92 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: 0.44 Total: -30.72 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.88 Total: 47.52 kcal Total: -78.84 3.45 -75.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259870619.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.222 kcal (2) G-P(sol) polarization free energy of solvation -78.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds